Wall clock time and date at job start Tue Mar 31 2020 23:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99942 * 2 1 4 4 C 1.54316 * 109.88412 * 238.89899 * 2 1 3 5 5 H 1.09002 * 110.72355 * 144.41513 * 4 2 1 6 6 N 1.46502 * 110.72235 * 21.14308 * 4 2 1 7 7 C 1.34769 * 120.00130 * 155.00243 * 6 4 2 8 8 O 1.21623 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.47237 * 120.00116 * 180.02562 * 7 6 4 10 10 C 1.37012 * 127.18864 * 179.97438 * 9 7 6 11 11 N 1.33316 * 106.36918 * 179.97438 * 10 9 7 12 12 N 1.28516 * 109.44196 * 359.97438 * 11 10 9 13 13 N 1.28717 * 110.63879 * 359.75399 * 12 11 10 14 14 H 0.97000 * 126.03875 * 180.26022 * 13 12 11 15 15 C 1.55160 * 102.94268 * 262.77850 * 4 2 1 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 4 2 17 17 N 1.47026 * 109.87754 * 121.08960 * 2 1 3 18 18 C 1.34771 * 125.65100 * 300.21195 * 17 2 1 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 2 21 21 S 1.81003 * 109.46955 * 180.02562 * 20 18 17 22 22 C 1.76194 * 99.99790 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.38804 * 119.99728 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00001 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47033 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47242 * 119.99415 * 26 24 22 29 29 H 1.48500 * 109.46769 * 240.00010 * 26 24 22 30 30 H 1.08996 * 109.47273 * 300.36335 * 1 2 3 31 31 H 1.09008 * 109.46689 * 60.36026 * 1 2 3 32 32 H 1.09003 * 109.47215 * 180.35834 * 1 2 3 33 33 H 0.97005 * 119.99736 * 334.99628 * 6 4 2 34 34 H 1.08002 * 126.81292 * 359.92171 * 10 9 7 35 35 H 1.08991 * 111.00600 * 82.57442 * 15 4 2 36 36 H 1.09004 * 111.00084 * 206.38888 * 15 4 2 37 37 H 1.09001 * 110.36852 * 278.17238 * 16 15 4 38 38 H 1.08998 * 110.36449 * 155.84885 * 16 15 4 39 39 H 1.09000 * 109.46686 * 299.99326 * 20 18 17 40 40 H 1.08989 * 109.47272 * 60.00000 * 20 18 17 41 41 H 0.97003 * 119.99609 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 2.9657 -0.2833 -1.6181 6 7 1.0294 -0.8027 -2.2875 7 6 1.3897 -0.9369 -3.5791 8 8 2.5663 -1.0134 -3.8775 9 6 0.3591 -0.9897 -4.6293 10 6 0.5576 -1.1218 -5.9785 11 7 -0.6525 -1.1227 -6.5380 12 7 -1.5469 -1.0019 -5.6231 13 7 -0.9993 -0.9237 -4.4608 14 1 -1.4656 -0.8318 -3.6153 15 6 2.3518 -2.1696 -0.6921 16 6 2.8567 -1.8498 0.7371 17 7 2.0299 -0.7140 1.1841 18 6 1.7788 -0.3817 2.4658 19 8 1.0855 0.5809 2.7181 20 6 2.3594 -1.2064 3.5856 21 16 1.8444 -0.5121 5.1759 22 6 2.6403 -1.6376 6.2732 23 1 3.2286 -2.4524 5.8778 24 6 2.5104 -1.4776 7.6459 25 7 1.7929 -0.4848 8.1277 26 14 3.3548 -2.6704 8.8093 27 1 4.0948 -3.6894 8.0223 28 1 4.3048 -1.9278 9.6760 29 1 2.3355 -3.3427 9.6545 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8933 32 1 -0.3634 -1.0277 0.0064 33 1 0.0909 -0.7414 -2.0496 34 1 1.5062 -1.2073 -6.4878 35 1 1.4452 -2.7737 -0.6601 36 1 3.1266 -2.6622 -1.2797 37 1 3.9090 -1.5667 0.7132 38 1 2.7086 -2.7080 1.3925 39 1 2.0010 -2.2326 3.5046 40 1 3.4472 -1.1950 3.5190 41 1 1.7024 -0.3728 9.0870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337899607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:14 Heat of formation + Delta-G solvation = 38.247101 kcal Electronic energy + Delta-G solvation = -26248.328118 eV Core-core repulsion = 22292.289379 eV Total energy + Delta-G solvation = -3956.038739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.92824 -40.92003 -39.57582 -37.58924 -35.05473 -33.98469 -32.49280 -32.18560 -31.69195 -30.96821 -28.65620 -26.46888 -25.56185 -24.90392 -23.52160 -23.17156 -21.97961 -20.71944 -20.06704 -19.20858 -17.88583 -17.39923 -16.98812 -16.91985 -16.68486 -15.83804 -15.45317 -15.28910 -14.90341 -14.86075 -14.81305 -14.34002 -14.11473 -13.61339 -13.29678 -13.02323 -12.77801 -12.73866 -12.62424 -12.47515 -12.13249 -11.88553 -11.86562 -11.44514 -11.35062 -11.21488 -11.12002 -11.07837 -10.83468 -10.80947 -10.15474 -9.87447 -9.76137 -9.50816 -9.13494 -8.73017 -8.31359 -6.57867 -6.28167 -3.99320 0.27521 1.72751 1.80525 2.18596 2.44739 2.79185 2.91418 3.17107 3.20736 3.26442 3.49925 3.70459 3.89008 4.08285 4.14026 4.15846 4.38632 4.55083 4.56917 4.68918 4.86819 4.89092 4.99382 5.07252 5.08321 5.22019 5.38501 5.40488 5.45260 5.52394 5.55967 5.67909 5.76673 5.81059 5.94178 5.97172 6.04820 6.28953 6.62424 7.33255 7.47624 7.53993 7.67338 8.29079 8.40272 9.17532 10.79277 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.001970 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.568530 B =14208.245489 C =14574.683151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.132 3.868 3 H 0.086 0.914 4 C 0.138 3.862 5 H 0.115 0.885 6 N -0.716 5.716 7 C 0.598 3.402 8 O -0.508 6.508 9 C -0.069 4.069 10 C 0.037 3.963 11 N -0.269 5.269 12 N -0.042 5.042 13 N -0.375 5.375 14 H 0.451 0.549 15 C -0.143 4.143 16 C 0.101 3.899 17 N -0.622 5.622 18 C 0.552 3.448 19 O -0.511 6.511 20 C -0.148 4.148 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.206 0.794 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -3.141 -24.594 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.033 3.967 5 H 0.133 0.867 6 N -0.370 5.370 7 C 0.381 3.619 8 O -0.381 6.381 9 C -0.203 4.203 10 C -0.122 4.122 11 N -0.134 5.134 12 N -0.024 5.024 13 N -0.102 5.102 14 H 0.298 0.702 15 C -0.182 4.182 16 C -0.023 4.023 17 N -0.360 5.360 18 C 0.341 3.659 19 O -0.385 6.385 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.092 0.908 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.223 0.777 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.320 -1.668 -25.061 25.335 hybrid contribution 1.544 -1.822 1.773 2.975 sum -1.776 -3.490 -23.287 23.614 Atomic orbital electron populations 1.22204 0.95028 1.02513 1.03562 1.21536 0.94943 0.96586 0.84171 0.89642 1.22089 0.91597 0.96877 0.86174 0.86745 1.46076 1.10784 1.74523 1.05620 1.16738 0.86975 0.76972 0.81166 1.90899 1.16598 1.48854 1.81714 1.22363 0.84244 1.15825 0.97877 1.23975 0.98675 1.00052 0.89535 1.75049 0.98109 1.16677 1.23527 1.78278 1.21906 1.15648 0.86580 1.45640 1.05469 1.48203 1.10889 0.70229 1.23224 1.02891 0.96415 0.95680 1.22304 0.95367 0.89903 0.94692 1.48535 1.52271 1.30716 1.04525 1.20052 0.79940 0.84756 0.81173 1.90699 1.37426 1.27860 1.82466 1.23520 1.03881 1.02508 0.99893 1.85397 1.67376 1.40042 0.90526 1.22890 1.36763 1.15645 0.93060 0.90841 1.24999 0.95215 0.95991 0.97381 1.70022 1.37473 1.29099 1.13629 0.86111 0.79078 0.80187 0.80093 1.19590 1.20517 1.20550 0.89307 0.92156 0.92077 0.76230 0.77699 0.90092 0.88956 0.90692 0.89676 0.89259 0.89160 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 7.93 37.16 0.29 -1.19 16 2 C 0.13 1.26 3.47 -66.95 -0.23 1.02 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.14 0.98 3.19 -66.10 -0.21 0.77 16 5 H 0.11 0.89 7.55 -51.93 -0.39 0.50 16 6 N -0.72 -3.93 4.89 -53.16 -0.26 -4.19 16 7 C 0.60 4.30 7.81 -12.61 -0.10 4.20 16 8 O -0.51 -5.26 16.57 5.26 0.09 -5.17 16 9 C -0.07 -0.44 7.17 -82.33 -0.59 -1.03 16 10 C 0.04 0.27 11.87 -17.35 -0.21 0.07 16 11 N -0.27 -2.47 12.35 30.47 0.38 -2.09 16 12 N -0.04 -0.34 13.35 60.35 0.81 0.47 16 13 N -0.37 -1.88 6.98 33.31 0.23 -1.64 16 14 H 0.45 0.59 8.32 -190.33 -1.58 -1.00 16 15 C -0.14 -0.98 6.77 -24.58 -0.17 -1.14 16 16 C 0.10 0.90 6.69 -2.53 -0.02 0.88 16 17 N -0.62 -7.56 3.08 -163.02 -0.50 -8.06 16 18 C 0.55 9.56 7.65 -10.98 -0.08 9.48 16 19 O -0.51 -10.68 14.77 5.56 0.08 -10.60 16 20 C -0.15 -2.82 5.16 36.01 0.19 -2.63 16 21 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 22 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 23 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 25 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 26 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.09 1.08 6.76 -51.93 -0.35 0.73 16 31 H 0.06 0.32 6.82 -51.92 -0.35 -0.04 16 32 H 0.06 0.46 8.01 -51.93 -0.42 0.04 16 33 H 0.40 1.35 5.13 -40.82 -0.21 1.14 16 34 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.75 7.49 -51.93 -0.39 0.36 16 39 H 0.09 1.57 7.86 -51.92 -0.41 1.16 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -36.53 362.14 -7.33 -43.87 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.18 Total: -3.15 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.93 Total: -2.14 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 1.39 Total: -40.38 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.17 Total: -15.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.53 -7.33 -43.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337899607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.112 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds