Wall clock time and date at job start Tue Mar 31 2020 23:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99942 * 2 1 4 4 C 1.54316 * 109.88412 * 238.89899 * 2 1 3 5 5 H 1.09002 * 110.72355 * 144.41513 * 4 2 1 6 6 N 1.46502 * 110.72235 * 21.14308 * 4 2 1 7 7 C 1.34769 * 120.00130 * 155.00243 * 6 4 2 8 8 O 1.21623 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.47237 * 120.00116 * 180.02562 * 7 6 4 10 10 C 1.37012 * 127.18864 * 179.97438 * 9 7 6 11 11 N 1.33316 * 106.36918 * 179.97438 * 10 9 7 12 12 N 1.28516 * 109.44196 * 359.97438 * 11 10 9 13 13 N 1.28717 * 110.63879 * 359.75399 * 12 11 10 14 14 H 0.97000 * 126.03875 * 180.26022 * 13 12 11 15 15 C 1.55160 * 102.94268 * 262.77850 * 4 2 1 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 4 2 17 17 N 1.47026 * 109.87754 * 121.08960 * 2 1 3 18 18 C 1.34771 * 125.65100 * 300.21195 * 17 2 1 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 2 21 21 S 1.81003 * 109.46955 * 180.02562 * 20 18 17 22 22 C 1.76194 * 99.99790 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.38804 * 119.99728 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00001 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99986 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47033 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47242 * 119.99415 * 26 24 22 29 29 H 1.48500 * 109.46769 * 240.00010 * 26 24 22 30 30 H 1.08996 * 109.47273 * 300.36335 * 1 2 3 31 31 H 1.09008 * 109.46689 * 60.36026 * 1 2 3 32 32 H 1.09003 * 109.47215 * 180.35834 * 1 2 3 33 33 H 0.97005 * 119.99736 * 334.99628 * 6 4 2 34 34 H 1.08002 * 126.81292 * 359.92171 * 10 9 7 35 35 H 1.08991 * 111.00600 * 82.57442 * 15 4 2 36 36 H 1.09004 * 111.00084 * 206.38888 * 15 4 2 37 37 H 1.09001 * 110.36852 * 278.17238 * 16 15 4 38 38 H 1.08998 * 110.36449 * 155.84885 * 16 15 4 39 39 H 1.09000 * 109.46686 * 299.99326 * 20 18 17 40 40 H 1.08989 * 109.47272 * 60.00000 * 20 18 17 41 41 H 0.97003 * 119.99609 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 2.9657 -0.2833 -1.6181 6 7 1.0294 -0.8027 -2.2875 7 6 1.3897 -0.9369 -3.5791 8 8 2.5663 -1.0134 -3.8775 9 6 0.3591 -0.9897 -4.6293 10 6 0.5576 -1.1218 -5.9785 11 7 -0.6525 -1.1227 -6.5380 12 7 -1.5469 -1.0019 -5.6231 13 7 -0.9993 -0.9237 -4.4608 14 1 -1.4656 -0.8318 -3.6153 15 6 2.3518 -2.1696 -0.6921 16 6 2.8567 -1.8498 0.7371 17 7 2.0299 -0.7140 1.1841 18 6 1.7788 -0.3817 2.4658 19 8 1.0855 0.5809 2.7181 20 6 2.3594 -1.2064 3.5856 21 16 1.8444 -0.5121 5.1759 22 6 2.6403 -1.6376 6.2732 23 1 3.2286 -2.4524 5.8778 24 6 2.5104 -1.4776 7.6459 25 7 1.7929 -0.4848 8.1277 26 14 3.3548 -2.6704 8.8093 27 1 4.0948 -3.6894 8.0223 28 1 4.3048 -1.9278 9.6760 29 1 2.3355 -3.3427 9.6545 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8933 32 1 -0.3634 -1.0277 0.0064 33 1 0.0909 -0.7414 -2.0496 34 1 1.5062 -1.2073 -6.4878 35 1 1.4452 -2.7737 -0.6601 36 1 3.1266 -2.6622 -1.2797 37 1 3.9090 -1.5667 0.7132 38 1 2.7086 -2.7080 1.3925 39 1 2.0010 -2.2326 3.5046 40 1 3.4472 -1.1950 3.5190 41 1 1.7024 -0.3728 9.0870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337899607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:14 Heat of formation + Delta-G solvation = 9.810413 kcal Electronic energy + Delta-G solvation = -26249.561226 eV Core-core repulsion = 22292.289379 eV Total energy + Delta-G solvation = -3957.271847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46375 -41.72336 -40.48139 -38.65132 -35.79330 -34.60016 -34.57910 -32.89363 -32.41740 -31.88254 -29.92500 -27.66927 -27.15113 -25.51955 -24.20397 -23.95523 -22.57228 -21.46305 -20.65983 -20.32308 -19.57567 -18.22322 -17.85255 -17.60142 -17.46838 -16.89431 -16.81070 -16.60445 -15.95465 -15.82564 -15.63118 -15.42996 -15.25722 -14.64246 -14.49618 -14.11448 -13.88096 -13.68441 -13.34264 -13.23948 -13.17140 -13.13593 -12.92925 -12.81230 -12.59766 -12.42643 -12.14783 -11.88844 -11.87341 -11.71004 -11.47385 -11.16691 -10.90452 -10.72568 -10.33699 -10.27170 -9.76742 -8.67656 -8.35873 -6.13584 -0.25208 1.15316 1.19519 1.35646 1.40812 1.44041 1.54505 1.56398 1.71713 1.88939 2.12103 2.26473 2.98683 3.13115 3.22488 3.31689 3.47860 3.57031 3.81051 3.87448 3.91885 4.04632 4.06893 4.21295 4.23808 4.27052 4.42778 4.47732 4.58881 4.71751 4.86444 4.91299 4.95203 4.99359 5.15611 5.22817 5.41072 5.41660 5.60477 6.12635 6.19146 6.33939 6.79138 7.05986 7.11044 7.12767 8.73421 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.001970 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.568530 B =14208.245489 C =14574.683151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 H 0.075 0.925 4 C 0.150 3.850 5 H 0.114 0.886 6 N -0.702 5.702 7 C 0.608 3.392 8 O -0.538 6.538 9 C -0.064 4.064 10 C 0.031 3.969 11 N -0.298 5.298 12 N -0.058 5.058 13 N -0.351 5.351 14 H 0.467 0.533 15 C -0.131 4.131 16 C 0.091 3.909 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.122 4.122 21 S -0.149 6.149 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.256 1.256 28 H -0.275 1.275 29 H -0.274 1.274 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.220 0.780 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 -5.117 -25.955 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.023 3.977 3 H 0.093 0.907 4 C 0.045 3.955 5 H 0.132 0.868 6 N -0.357 5.357 7 C 0.392 3.608 8 O -0.412 6.412 9 C -0.199 4.199 10 C -0.129 4.129 11 N -0.162 5.162 12 N -0.041 5.041 13 N -0.082 5.082 14 H 0.317 0.683 15 C -0.170 4.170 16 C -0.031 4.031 17 N -0.347 5.347 18 C 0.340 3.660 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.079 5.921 22 C -0.692 4.692 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.180 1.180 28 H -0.200 1.200 29 H -0.200 1.200 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.237 0.763 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.498 -3.668 -26.461 26.831 hybrid contribution 1.288 -1.192 2.071 2.714 sum -1.210 -4.860 -24.390 24.899 Atomic orbital electron populations 1.22171 0.94113 1.03329 1.03421 1.21708 0.95759 0.96226 0.84005 0.90667 1.21887 0.91641 0.96800 0.85209 0.86847 1.45891 1.11186 1.73780 1.04805 1.16662 0.86477 0.76316 0.81352 1.90898 1.17832 1.50364 1.82146 1.22184 0.84481 1.15850 0.97377 1.24319 0.98821 0.99690 0.90087 1.75036 0.98868 1.17906 1.24421 1.78226 1.22107 1.16394 0.87334 1.45608 1.05037 1.46479 1.11040 0.68257 1.23193 1.03738 0.96066 0.94039 1.22629 0.95621 0.88798 0.96078 1.48393 1.51464 1.31352 1.03531 1.19668 0.79776 0.84094 0.82509 1.90687 1.39627 1.29712 1.83477 1.23325 1.04679 1.03016 0.96301 1.85556 1.68626 1.42165 0.95795 1.23225 1.36662 1.15706 0.93654 0.89906 1.26113 0.95806 0.97864 0.99360 1.70183 1.39181 1.31256 1.14112 0.84923 0.77920 0.77760 0.77465 1.17957 1.20031 1.19975 0.93199 0.88675 0.90699 0.74787 0.76323 0.89107 0.87537 0.89421 0.89146 0.87453 0.87661 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 7.93 71.98 0.57 -2.06 16 2 C 0.13 2.19 3.47 45.34 0.16 2.35 16 3 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.15 1.70 3.19 46.18 0.15 1.85 16 5 H 0.11 1.44 7.55 -2.39 -0.02 1.43 16 6 N -0.70 -5.42 4.89 -440.37 -2.15 -7.57 16 7 C 0.61 7.04 7.81 86.61 0.68 7.72 16 8 O -0.54 -9.83 16.57 -4.10 -0.07 -9.89 16 9 C -0.06 -0.67 7.17 40.41 0.29 -0.38 16 10 C 0.03 0.41 11.87 84.18 1.00 1.40 16 11 N -0.30 -5.15 12.35 -57.50 -0.71 -5.86 16 12 N -0.06 -0.86 13.35 37.02 0.49 -0.37 16 13 N -0.35 -2.68 6.98 -48.51 -0.34 -3.02 16 14 H 0.47 -0.19 8.32 -219.90 -1.83 -2.01 16 15 C -0.13 -1.32 6.77 31.99 0.22 -1.10 16 16 C 0.09 1.35 6.69 86.86 0.58 1.94 16 17 N -0.61 -13.96 3.08 -788.06 -2.43 -16.38 16 18 C 0.55 19.06 7.65 87.66 0.67 19.73 16 19 O -0.56 -24.09 14.77 -3.02 -0.04 -24.14 16 20 C -0.12 -4.62 5.16 71.24 0.37 -4.25 16 21 S -0.15 -8.00 20.57 -56.49 -1.16 -9.17 16 22 C -0.54 -30.33 9.50 67.96 0.65 -29.68 16 23 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 24 C 0.01 0.75 5.49 84.86 0.47 1.21 16 25 N -0.91 -54.99 13.22 21.65 0.29 -54.70 16 26 Si 1.00 42.68 29.55 68.60 2.03 44.71 16 27 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H 0.05 1.22 6.76 -2.39 -0.02 1.20 16 31 H 0.09 0.73 6.82 -2.38 -0.02 0.71 16 32 H 0.07 0.93 8.01 -2.39 -0.02 0.91 16 33 H 0.41 1.24 5.13 -92.70 -0.48 0.77 16 34 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.30 7.49 -2.39 -0.02 1.29 16 39 H 0.11 3.64 7.86 -2.40 -0.02 3.62 16 40 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 41 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -82.71 362.14 0.49 -82.22 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -1.20 Total: 5.45 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.79 Total: -1.28 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -4.85 Total: -87.90 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.11 Total: -34.03 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.17 kcal Total: -82.71 0.49 -82.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337899607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.027 kcal (2) G-P(sol) polarization free energy of solvation -82.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds