Wall clock time and date at job start Tue Mar 31 2020 22:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47311 * 274.99644 * 3 2 1 5 5 H 1.48501 * 109.47374 * 34.99765 * 3 2 1 6 6 H 1.48503 * 109.47215 * 154.99528 * 3 2 1 7 7 C 1.37877 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99394 * 185.87296 * 7 2 1 9 9 C 1.50695 * 120.00598 * 5.87269 * 7 2 1 10 10 C 1.53077 * 109.43886 * 66.48457 * 9 7 2 11 11 C 1.53197 * 109.29561 * 181.23868 * 10 9 7 12 12 N 1.46928 * 108.89100 * 305.58004 * 11 10 9 13 13 C 1.34774 * 120.63000 * 233.55889 * 12 11 10 14 14 O 1.21363 * 119.99958 * 171.29499 * 13 12 11 15 15 C 1.49348 * 119.99770 * 351.28834 * 13 12 11 16 16 O 1.21373 * 120.00198 * 353.50418 * 15 13 12 17 17 N 1.34782 * 119.99604 * 173.50546 * 15 13 12 18 18 C 1.39833 * 119.99806 * 183.53918 * 17 15 13 19 19 C 1.38847 * 120.45054 * 145.41707 * 18 17 15 20 20 N 1.31866 * 120.73475 * 179.97438 * 19 18 17 21 21 C 1.32007 * 121.79089 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.57975 * 179.97438 * 21 20 19 23 23 C 1.38778 * 120.83769 * 359.97438 * 21 20 19 24 24 F 1.35093 * 120.41609 * 180.02562 * 23 21 20 25 25 C 1.38613 * 119.17117 * 359.70970 * 23 21 20 26 26 C 1.46927 * 118.73824 * 53.53839 * 12 11 10 27 27 C 1.53029 * 109.46366 * 186.68925 * 9 7 2 28 28 H 0.97002 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.45883 * 306.67078 * 9 7 2 30 30 H 1.09000 * 109.38987 * 61.36453 * 10 9 7 31 31 H 1.08997 * 109.62454 * 301.25369 * 10 9 7 32 32 H 1.08996 * 109.58494 * 185.72262 * 11 10 9 33 33 H 1.09000 * 109.58597 * 65.43697 * 11 10 9 34 34 H 0.97002 * 119.99933 * 3.53630 * 17 15 13 35 35 H 1.07996 * 119.63193 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.81588 * 180.29052 * 25 23 21 37 37 H 1.08997 * 109.58784 * 66.17381 * 26 12 11 38 38 H 1.08999 * 109.58600 * 186.45814 * 26 12 11 39 39 H 1.09008 * 109.49540 * 58.68164 * 27 9 7 40 40 H 1.08994 * 109.52746 * 298.59664 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4119 0.5918 7 6 2.0044 -1.1941 0.0005 8 1 3.0802 -1.1965 0.0962 9 6 1.2569 -2.4958 -0.1324 10 6 0.6240 -2.5801 -1.5237 11 6 -0.1606 -3.8903 -1.6444 12 7 0.7310 -5.0108 -1.3151 13 6 0.8799 -6.0434 -2.1683 14 8 1.7327 -6.8821 -1.9629 15 6 -0.0045 -6.1555 -3.3666 16 8 -0.9320 -5.3860 -3.5104 17 7 0.2275 -7.1112 -4.2882 18 6 -0.5540 -7.1700 -5.4463 19 6 0.0045 -7.5709 -6.6525 20 7 -0.7274 -7.6289 -7.7479 21 6 -2.0087 -7.3115 -7.7457 22 9 -2.7163 -7.3866 -8.8941 23 6 -2.6381 -6.9017 -6.5787 24 9 -3.9500 -6.5794 -6.5861 25 6 -1.9054 -6.8336 -5.4040 26 6 1.4574 -4.9839 -0.0383 27 6 2.2269 -3.6631 0.0634 28 1 -0.4850 0.8401 0.0004 29 1 0.4736 -2.5436 0.6240 30 1 1.4084 -2.5547 -2.2802 31 1 -0.0510 -1.7370 -1.6704 32 1 -0.5283 -4.0033 -2.6642 33 1 -1.0022 -3.8773 -0.9518 34 1 0.9366 -7.7581 -4.1482 35 1 1.0499 -7.8390 -6.6940 36 1 -2.3695 -6.5226 -4.4797 37 1 0.7490 -5.0585 0.7868 38 1 2.1554 -5.8200 0.0026 39 1 2.6926 -3.5882 1.0462 40 1 2.9968 -3.6304 -0.7074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338008049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:25 Heat of formation + Delta-G solvation = -96.659859 kcal Electronic energy + Delta-G solvation = -28924.686364 eV Core-core repulsion = 24376.664482 eV Total energy + Delta-G solvation = -4548.021882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.89543 -48.99004 -41.64127 -40.32404 -38.77793 -37.25960 -35.71864 -33.57161 -32.56991 -31.37240 -30.39056 -30.26634 -26.89729 -25.38477 -24.80169 -23.57381 -22.61974 -22.19072 -20.73354 -19.45520 -18.68841 -18.54862 -18.36437 -17.34238 -17.00639 -16.95941 -16.45030 -16.13995 -16.06609 -15.46461 -15.43427 -15.13748 -14.59416 -14.56115 -14.34970 -14.12835 -13.65721 -13.47911 -13.29814 -13.18731 -13.00374 -12.86517 -12.49097 -11.94881 -11.57483 -11.48205 -11.17739 -10.97145 -10.71441 -10.61297 -10.49059 -10.25850 -10.07145 -9.87023 -9.43965 -9.20757 -8.94445 -8.81044 -8.43092 -8.29489 -6.09747 -4.13230 0.05714 0.36132 1.22534 1.93131 2.78932 2.80292 3.06534 3.25269 3.28688 3.33378 3.35881 3.52895 3.88303 4.10252 4.16361 4.37556 4.37982 4.75743 5.06347 5.22274 5.30224 5.43657 5.52770 5.70523 5.75316 5.93893 6.00007 6.03205 6.24452 6.35649 6.45777 6.49724 6.67200 6.86821 6.90410 6.97373 7.06985 7.36188 7.48947 7.60920 7.80253 7.87824 7.93986 8.32855 8.90780 9.51614 10.98655 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002607 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.867772 B =10737.354944 C =11731.894433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.065 3.935 12 N -0.556 5.556 13 C 0.504 3.496 14 O -0.536 6.536 15 C 0.513 3.487 16 O -0.481 6.481 17 N -0.642 5.642 18 C 0.120 3.880 19 C 0.112 3.888 20 N -0.464 5.464 21 C 0.264 3.736 22 F -0.100 7.100 23 C 0.057 3.943 24 F -0.112 7.112 25 C -0.089 4.089 26 C 0.107 3.893 27 C -0.122 4.122 28 H 0.261 0.739 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.431 0.569 35 H 0.183 0.817 36 H 0.176 0.824 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -16.674 -10.227 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.156 4.156 11 C -0.056 4.056 12 N -0.287 5.287 13 C 0.285 3.715 14 O -0.415 6.415 15 C 0.297 3.703 16 O -0.354 6.354 17 N -0.291 5.291 18 C 0.022 3.978 19 C -0.049 4.049 20 N -0.177 5.177 21 C 0.109 3.891 22 F -0.080 7.080 23 C 0.033 3.967 24 F -0.091 7.091 25 C -0.117 4.117 26 C -0.014 4.014 27 C -0.161 4.161 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.271 0.729 35 H 0.200 0.800 36 H 0.193 0.807 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.790 -16.623 -10.940 20.095 hybrid contribution -0.020 1.131 0.577 1.270 sum -2.809 -15.493 -10.363 18.849 Atomic orbital electron populations 1.69925 1.05867 1.26636 1.50274 1.24963 0.94829 0.99086 0.94967 0.86636 0.80009 0.83699 0.78006 1.20738 1.21257 1.19913 1.21146 0.93362 0.90613 1.50269 0.92686 1.18696 0.93912 0.91748 0.93053 1.21978 0.99170 0.94303 1.00120 1.23090 0.92210 0.85971 1.04301 1.48217 1.43183 1.19032 1.18267 1.19427 0.84561 0.83631 0.83846 1.90743 1.34160 1.41834 1.74779 1.20823 0.85559 0.79964 0.83970 1.90603 1.29944 1.39334 1.75494 1.43141 1.36021 1.32347 1.17558 1.18557 0.90149 1.01231 0.87906 1.22515 1.00021 0.98054 0.84284 1.67121 1.04194 1.15686 1.30668 1.18120 0.88021 1.01297 0.81652 1.91674 1.75707 1.93532 1.47037 1.18174 0.80438 1.04372 0.93723 1.91596 1.30580 1.90014 1.96895 1.21786 0.92273 0.98581 0.99105 1.21976 0.95957 1.00551 0.82958 1.22017 0.98981 0.93713 1.01340 0.92931 0.94636 0.94178 0.89169 0.86342 0.91426 0.72948 0.80047 0.80696 0.91120 0.89843 0.91540 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 12.05 55.43 0.67 -23.62 16 2 C 0.06 1.68 5.25 -17.82 -0.09 1.58 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.36 8.47 -34.44 -0.29 -13.65 16 8 H 0.05 1.42 7.76 -52.48 -0.41 1.02 16 9 C 0.04 1.01 1.92 -91.72 -0.18 0.84 16 10 C -0.12 -2.50 5.22 -26.59 -0.14 -2.63 16 11 C 0.06 1.13 5.98 -3.71 -0.02 1.11 16 12 N -0.56 -9.02 2.97 -173.31 -0.52 -9.53 16 13 C 0.50 7.36 7.73 -11.63 -0.09 7.27 16 14 O -0.54 -8.26 15.92 5.49 0.09 -8.17 16 15 C 0.51 6.31 7.59 -11.63 -0.09 6.22 16 16 O -0.48 -6.71 10.68 5.48 0.06 -6.65 16 17 N -0.64 -5.65 5.34 -10.19 -0.05 -5.70 16 18 C 0.12 1.04 6.31 -83.58 -0.53 0.51 16 19 C 0.11 0.85 11.12 -17.31 -0.19 0.66 16 20 N -0.46 -4.64 10.36 -13.37 -0.14 -4.78 16 21 C 0.26 2.82 8.41 -17.28 -0.15 2.68 16 22 F -0.10 -1.13 17.21 2.25 0.04 -1.09 16 23 C 0.06 0.59 7.35 -39.24 -0.29 0.30 16 24 F -0.11 -1.25 17.19 2.25 0.04 -1.21 16 25 C -0.09 -0.88 8.78 -39.04 -0.34 -1.23 16 26 C 0.11 1.72 6.44 -3.71 -0.02 1.70 16 27 C -0.12 -2.31 5.31 -26.61 -0.14 -2.45 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 2.17 6.83 -51.93 -0.35 1.81 16 32 H 0.12 2.00 4.31 -54.82 -0.24 1.77 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.43 2.83 8.30 -40.82 -0.34 2.49 16 35 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.18 1.82 6.35 -52.49 -0.33 1.48 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.27 7.00 -51.93 -0.36 0.90 16 39 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -28.94 344.20 -6.34 -35.28 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.13 Total: 1.84 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.56 Total: 2.90 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.04 Total: -43.63 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.15 Total: -14.82 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.94 -6.34 -35.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338008049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.381 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds