Wall clock time and date at job start Tue Mar 31 2020 22:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47311 * 274.99644 * 3 2 1 5 5 H 1.48501 * 109.47374 * 34.99765 * 3 2 1 6 6 H 1.48503 * 109.47215 * 154.99528 * 3 2 1 7 7 C 1.37877 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99394 * 185.87296 * 7 2 1 9 9 C 1.50695 * 120.00598 * 5.87269 * 7 2 1 10 10 C 1.53077 * 109.43886 * 66.48457 * 9 7 2 11 11 C 1.53197 * 109.29561 * 181.23868 * 10 9 7 12 12 N 1.46928 * 108.89100 * 305.58004 * 11 10 9 13 13 C 1.34774 * 120.63000 * 233.55889 * 12 11 10 14 14 O 1.21363 * 119.99958 * 171.29499 * 13 12 11 15 15 C 1.49348 * 119.99770 * 351.28834 * 13 12 11 16 16 O 1.21373 * 120.00198 * 353.50418 * 15 13 12 17 17 N 1.34782 * 119.99604 * 173.50546 * 15 13 12 18 18 C 1.39833 * 119.99806 * 183.53918 * 17 15 13 19 19 C 1.38847 * 120.45054 * 145.41707 * 18 17 15 20 20 N 1.31866 * 120.73475 * 179.97438 * 19 18 17 21 21 C 1.32007 * 121.79089 * 0.02562 * 20 19 18 22 22 F 1.35102 * 119.57975 * 179.97438 * 21 20 19 23 23 C 1.38778 * 120.83769 * 359.97438 * 21 20 19 24 24 F 1.35093 * 120.41609 * 180.02562 * 23 21 20 25 25 C 1.38613 * 119.17117 * 359.70970 * 23 21 20 26 26 C 1.46927 * 118.73824 * 53.53839 * 12 11 10 27 27 C 1.53029 * 109.46366 * 186.68925 * 9 7 2 28 28 H 0.97002 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.45883 * 306.67078 * 9 7 2 30 30 H 1.09000 * 109.38987 * 61.36453 * 10 9 7 31 31 H 1.08997 * 109.62454 * 301.25369 * 10 9 7 32 32 H 1.08996 * 109.58494 * 185.72262 * 11 10 9 33 33 H 1.09000 * 109.58597 * 65.43697 * 11 10 9 34 34 H 0.97002 * 119.99933 * 3.53630 * 17 15 13 35 35 H 1.07996 * 119.63193 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.81588 * 180.29052 * 25 23 21 37 37 H 1.08997 * 109.58784 * 66.17381 * 26 12 11 38 38 H 1.08999 * 109.58600 * 186.45814 * 26 12 11 39 39 H 1.09008 * 109.49540 * 58.68164 * 27 9 7 40 40 H 1.08994 * 109.52746 * 298.59664 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4119 0.5918 7 6 2.0044 -1.1941 0.0005 8 1 3.0802 -1.1965 0.0962 9 6 1.2569 -2.4958 -0.1324 10 6 0.6240 -2.5801 -1.5237 11 6 -0.1606 -3.8903 -1.6444 12 7 0.7310 -5.0108 -1.3151 13 6 0.8799 -6.0434 -2.1683 14 8 1.7327 -6.8821 -1.9629 15 6 -0.0045 -6.1555 -3.3666 16 8 -0.9320 -5.3860 -3.5104 17 7 0.2275 -7.1112 -4.2882 18 6 -0.5540 -7.1700 -5.4463 19 6 0.0045 -7.5709 -6.6525 20 7 -0.7274 -7.6289 -7.7479 21 6 -2.0087 -7.3115 -7.7457 22 9 -2.7163 -7.3866 -8.8941 23 6 -2.6381 -6.9017 -6.5787 24 9 -3.9500 -6.5794 -6.5861 25 6 -1.9054 -6.8336 -5.4040 26 6 1.4574 -4.9839 -0.0383 27 6 2.2269 -3.6631 0.0634 28 1 -0.4850 0.8401 0.0004 29 1 0.4736 -2.5436 0.6240 30 1 1.4084 -2.5547 -2.2802 31 1 -0.0510 -1.7370 -1.6704 32 1 -0.5283 -4.0033 -2.6642 33 1 -1.0022 -3.8773 -0.9518 34 1 0.9366 -7.7581 -4.1482 35 1 1.0499 -7.8390 -6.6940 36 1 -2.3695 -6.5226 -4.4797 37 1 0.7490 -5.0585 0.7868 38 1 2.1554 -5.8200 0.0026 39 1 2.6926 -3.5882 1.0462 40 1 2.9968 -3.6304 -0.7074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338008049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:24 Heat of formation + Delta-G solvation = -115.020245 kcal Electronic energy + Delta-G solvation = -28925.482530 eV Core-core repulsion = 24376.664482 eV Total energy + Delta-G solvation = -4548.818048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.72115 -49.82102 -42.59334 -41.29023 -39.86998 -38.63857 -36.68470 -35.26020 -33.34516 -33.07091 -31.82954 -31.14924 -28.42829 -26.65534 -25.61909 -24.75967 -24.13985 -23.40466 -21.87436 -20.80028 -19.57569 -19.40838 -19.33597 -18.52590 -18.27439 -17.95287 -17.82617 -17.25105 -17.10092 -16.50310 -16.37129 -16.29832 -16.05925 -15.55614 -15.39163 -15.32145 -14.84065 -14.64130 -14.56003 -14.32622 -14.26013 -14.03310 -13.94216 -13.41635 -13.22878 -12.82136 -12.57670 -12.44037 -12.28764 -12.18510 -11.97624 -11.54000 -11.38287 -11.08093 -10.92730 -10.86732 -10.47193 -10.18496 -9.75263 -9.62802 -8.11357 -6.20618 -0.73230 -0.38749 0.20089 0.95801 1.40338 1.43214 1.51652 1.84849 2.01844 2.18312 2.24939 2.43853 2.76910 2.94847 3.19142 3.24908 3.41408 3.58272 4.03540 4.10315 4.26244 4.29997 4.36955 4.45846 4.56879 4.60546 4.64286 4.77183 4.91687 5.02990 5.14638 5.19555 5.28099 5.35878 5.38824 5.63650 5.71269 5.96926 6.02297 6.17912 6.19427 6.37228 6.44739 6.72181 6.91219 7.46808 8.95756 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002607 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.867772 B =10737.354944 C =11731.894433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.017 3.983 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.041 3.959 10 C -0.108 4.108 11 C 0.082 3.918 12 N -0.567 5.567 13 C 0.510 3.490 14 O -0.538 6.538 15 C 0.519 3.481 16 O -0.500 6.500 17 N -0.619 5.619 18 C 0.118 3.882 19 C 0.135 3.865 20 N -0.477 5.477 21 C 0.257 3.743 22 F -0.108 7.108 23 C 0.047 3.953 24 F -0.121 7.121 25 C -0.090 4.090 26 C 0.113 3.887 27 C -0.114 4.114 28 H 0.260 0.740 29 H 0.008 0.992 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.445 0.555 35 H 0.223 0.777 36 H 0.170 0.830 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -18.186 -10.920 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.147 4.147 11 C -0.039 4.039 12 N -0.298 5.298 13 C 0.292 3.708 14 O -0.417 6.417 15 C 0.302 3.698 16 O -0.374 6.374 17 N -0.268 5.268 18 C 0.020 3.980 19 C -0.026 4.026 20 N -0.190 5.190 21 C 0.103 3.897 22 F -0.087 7.087 23 C 0.024 3.976 24 F -0.100 7.100 25 C -0.118 4.118 26 C -0.008 4.008 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.287 0.713 35 H 0.239 0.761 36 H 0.187 0.813 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.420 -18.186 -11.657 21.648 hybrid contribution -0.383 1.531 0.780 1.761 sum -1.803 -16.655 -10.877 19.973 Atomic orbital electron populations 1.70037 1.07007 1.27153 1.51227 1.25653 0.95566 1.02063 0.94967 0.85736 0.78993 0.80159 0.77925 1.20493 1.21144 1.19348 1.21541 0.93410 0.92280 1.49789 0.93143 1.18663 0.93804 0.92296 0.92997 1.21745 0.98541 0.95490 0.98911 1.22805 0.91477 0.84583 1.05021 1.48146 1.43471 1.19382 1.18834 1.19682 0.84385 0.82795 0.83957 1.90744 1.34321 1.41687 1.74945 1.20338 0.84953 0.80584 0.83893 1.90593 1.30610 1.40488 1.75755 1.42876 1.35862 1.31430 1.16655 1.18577 0.89639 1.01635 0.88153 1.23115 1.01214 0.95366 0.82871 1.67231 1.03910 1.16276 1.31568 1.18231 0.88438 1.01585 0.81452 1.91650 1.76017 1.93614 1.47435 1.18183 0.80233 1.05293 0.93932 1.91570 1.31210 1.90250 1.96947 1.21792 0.92949 0.98414 0.98661 1.21888 0.96215 0.99179 0.83525 1.21853 0.98154 0.93795 1.01390 0.93069 0.97404 0.94845 0.92416 0.85187 0.91848 0.71276 0.76080 0.81267 0.90215 0.88205 0.91107 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.18 12.05 21.45 0.26 -50.92 16 2 C 0.02 0.89 5.25 84.65 0.44 1.33 16 3 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.53 -27.98 8.47 25.60 0.22 -27.76 16 8 H 0.05 2.63 7.76 -2.91 -0.02 2.61 16 9 C 0.04 1.90 1.92 -11.51 -0.02 1.88 16 10 C -0.11 -4.69 5.22 30.69 0.16 -4.53 16 11 C 0.08 2.85 5.98 86.36 0.52 3.37 16 12 N -0.57 -17.54 2.97 -820.59 -2.44 -19.98 16 13 C 0.51 13.64 7.73 87.24 0.67 14.31 16 14 O -0.54 -14.92 15.92 -3.29 -0.05 -14.97 16 15 C 0.52 11.53 7.59 87.24 0.66 12.19 16 16 O -0.50 -13.15 10.68 -3.32 -0.04 -13.19 16 17 N -0.62 -8.91 5.34 -304.51 -1.63 -10.53 16 18 C 0.12 1.72 6.31 38.27 0.24 1.96 16 19 C 0.13 1.59 11.12 84.83 0.94 2.53 16 20 N -0.48 -8.44 10.36 -196.22 -2.03 -10.47 16 21 C 0.26 5.20 8.41 84.80 0.71 5.92 16 22 F -0.11 -2.38 17.21 44.97 0.77 -1.61 16 23 C 0.05 0.95 7.35 22.49 0.17 1.11 16 24 F -0.12 -2.69 17.19 44.97 0.77 -1.92 16 25 C -0.09 -1.65 8.78 22.62 0.20 -1.45 16 26 C 0.11 3.47 6.44 86.36 0.56 4.03 16 27 C -0.11 -4.23 5.31 30.67 0.16 -4.07 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 2.87 6.83 -2.39 -0.02 2.85 16 32 H 0.13 4.30 4.31 -48.19 -0.21 4.09 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.44 4.08 8.30 -92.71 -0.77 3.31 16 35 H 0.22 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.17 3.36 6.35 -2.91 -0.02 3.34 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 38 H 0.10 2.77 7.00 -2.39 -0.02 2.75 16 39 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -62.84 344.20 3.44 -59.40 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.16 Total: 8.79 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.63 Total: 10.82 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -5.84 Total: -91.90 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.09 Total: -28.16 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.55 Total: -3.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -62.84 3.44 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338008049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.616 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds