Wall clock time and date at job start Tue Mar 31 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87135 * 2 1 4 4 C 1.54320 * 109.88323 * 238.97906 * 2 1 3 5 5 C 1.55159 * 103.10089 * 218.14399 * 4 2 1 6 6 H 1.08998 * 111.00653 * 277.51676 * 5 4 2 7 7 N 1.46502 * 111.00214 * 153.66773 * 5 4 2 8 8 C 1.34775 * 120.00420 * 155.00081 * 7 5 4 9 9 O 1.21290 * 119.99499 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00626 * 179.97438 * 8 7 5 11 11 S 1.80993 * 109.47318 * 180.02562 * 10 8 7 12 12 C 1.76202 * 99.99980 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00253 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99892 * 180.02562 * 12 11 10 15 15 N 1.31626 * 120.00198 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47152 * 119.99799 * 16 14 12 19 19 H 1.48503 * 109.46927 * 239.99771 * 16 14 12 20 20 C 1.55389 * 101.36303 * 35.49909 * 5 4 2 21 21 N 1.47023 * 110.00913 * 121.09594 * 2 1 3 22 22 C 1.34782 * 125.64872 * 298.46499 * 21 2 1 23 23 O 1.21620 * 119.99737 * 354.46528 * 22 21 2 24 24 C 1.47225 * 120.00173 * 174.45691 * 22 21 2 25 25 C 1.37005 * 127.19160 * 173.54038 * 24 22 21 26 26 N 1.33317 * 106.37364 * 180.02562 * 25 24 22 27 27 N 1.28515 * 109.43995 * 0.02562 * 26 25 24 28 28 N 1.28716 * 110.63549 * 359.71197 * 27 26 25 29 29 H 0.97001 * 126.03264 * 180.29807 * 28 27 26 30 30 H 1.09002 * 109.47007 * 181.01578 * 1 2 3 31 31 H 1.08995 * 109.47205 * 301.01690 * 1 2 3 32 32 H 1.09004 * 109.46852 * 61.02311 * 1 2 3 33 33 H 1.09002 * 110.72470 * 336.60005 * 4 2 1 34 34 H 1.09009 * 110.71832 * 99.69711 * 4 2 1 35 35 H 0.97000 * 119.99819 * 335.00248 * 7 5 4 36 36 H 1.09000 * 109.47114 * 300.00338 * 10 8 7 37 37 H 1.09002 * 109.46935 * 59.99801 * 10 8 7 38 38 H 0.97006 * 120.00104 * 180.02562 * 15 14 12 39 39 H 1.08999 * 110.33704 * 204.16103 * 20 5 4 40 40 H 1.09004 * 110.44163 * 81.91728 * 20 5 4 41 41 H 1.08004 * 126.81367 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 6 3.2921 -1.5099 -0.6997 6 1 4.1679 -0.8617 -0.6689 7 7 3.5590 -2.7122 -1.4932 8 6 4.8039 -3.2265 -1.5394 9 8 5.7032 -2.6942 -0.9237 10 6 5.0784 -4.4635 -2.3552 11 16 6.8287 -4.9023 -2.2154 12 6 6.8666 -6.3381 -3.2361 13 1 5.9633 -6.6825 -3.7174 14 6 8.0573 -7.0272 -3.4206 15 7 9.1582 -6.6078 -2.8336 16 14 8.0973 -8.5498 -4.5021 17 1 6.7383 -8.8099 -5.0412 18 1 9.0433 -8.3337 -5.6263 19 1 8.5421 -9.7164 -3.6981 20 6 2.8195 -1.8769 0.7344 21 7 2.0331 -0.7135 1.1830 22 6 1.8114 -0.3625 2.4652 23 8 1.2301 0.6750 2.7199 24 6 2.2726 -1.2351 3.5577 25 6 2.2373 -0.9691 4.9012 26 7 2.7562 -2.0360 5.5093 27 7 3.0944 -2.9082 4.6281 28 7 2.8229 -2.4849 3.4433 29 1 2.9817 -2.9649 2.6155 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5295 0.8807 32 1 -0.3633 0.4979 -0.8991 33 1 1.3062 -1.4458 -1.6186 34 1 2.3475 -0.0434 -2.0223 35 1 2.8397 -3.1380 -1.9853 36 1 4.4671 -5.2863 -1.9843 37 1 4.8338 -4.2714 -3.3999 38 1 9.9904 -7.0891 -2.9629 39 1 3.6779 -2.0297 1.3886 40 1 2.1961 -2.7707 0.7127 41 1 1.8639 -0.0726 5.3738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338117679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:50 Heat of formation + Delta-G solvation = 8.828968 kcal Electronic energy + Delta-G solvation = -26488.518337 eV Core-core repulsion = 22531.203932 eV Total energy + Delta-G solvation = -3957.314405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.57317 -41.61569 -40.49895 -38.76215 -35.55380 -34.97341 -34.57390 -33.30053 -32.00977 -31.99742 -29.81162 -27.65041 -27.28174 -25.81516 -24.32861 -23.51369 -22.58323 -21.83643 -21.20857 -19.85166 -19.21210 -18.32887 -18.05616 -17.69327 -17.32193 -17.28551 -16.87084 -16.44160 -16.30152 -15.74459 -15.56341 -15.23660 -14.90576 -14.69840 -14.60157 -14.43079 -14.11376 -13.59032 -13.48548 -13.35763 -13.14779 -13.05561 -12.92267 -12.74755 -12.58630 -12.44246 -12.15916 -11.96613 -11.89184 -11.68587 -11.45786 -11.15451 -11.00190 -10.77558 -10.32637 -10.24530 -9.96392 -8.64726 -8.34438 -6.11345 -0.32300 1.07679 1.17042 1.28670 1.41653 1.45302 1.53474 1.55854 1.63089 1.80843 2.21441 2.28653 2.94171 3.00553 3.21876 3.25073 3.34285 3.53984 3.76477 3.86299 3.87751 3.96875 4.00157 4.10484 4.16137 4.34491 4.37396 4.55063 4.56775 4.58756 4.84221 4.86754 4.88726 5.07245 5.16993 5.32738 5.37743 5.43624 5.44595 6.00588 6.20737 6.46126 6.64789 7.05653 7.08061 7.20550 8.74613 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002460 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.574066 B =11379.342333 C =12710.873337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.141 3.859 6 H 0.090 0.910 7 N -0.698 5.698 8 C 0.539 3.461 9 O -0.560 6.560 10 C -0.131 4.131 11 S -0.154 6.154 12 C -0.542 4.542 13 H 0.085 0.915 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.996 3.004 17 H -0.255 1.255 18 H -0.276 1.276 19 H -0.277 1.277 20 C 0.063 3.937 21 N -0.604 5.604 22 C 0.617 3.383 23 O -0.535 6.535 24 C -0.067 4.067 25 C 0.032 3.968 26 N -0.293 5.293 27 N -0.065 5.065 28 N -0.361 5.361 29 H 0.459 0.541 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.424 0.576 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.270 0.730 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.562 11.596 2.922 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.034 3.966 6 H 0.108 0.892 7 N -0.352 5.352 8 C 0.325 3.675 9 O -0.437 6.437 10 C -0.282 4.282 11 S 0.073 5.927 12 C -0.690 4.690 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.818 3.182 17 H -0.178 1.178 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.062 4.062 21 N -0.337 5.337 22 C 0.403 3.597 23 O -0.410 6.410 24 C -0.202 4.202 25 C -0.128 4.128 26 N -0.157 5.157 27 N -0.047 5.047 28 N -0.094 5.094 29 H 0.313 0.687 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.263 0.737 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -20.694 11.949 5.094 24.433 hybrid contribution -0.819 -1.141 -2.229 2.634 sum -21.513 10.807 2.865 24.245 Atomic orbital electron populations 1.22106 0.92980 1.03036 1.03394 1.21810 0.95757 0.96728 0.82496 0.89930 1.23075 0.95673 1.00349 0.96516 1.21957 0.99442 0.86796 0.88435 0.89210 1.45518 1.09834 1.28935 1.50953 1.20087 0.82756 0.84418 0.80236 1.90737 1.45818 1.61672 1.45485 1.23382 1.02236 0.98761 1.03857 1.85624 1.05708 1.35568 1.65799 1.23230 0.98636 1.13095 1.34054 0.89736 1.26094 0.94199 1.01498 0.97416 1.70183 1.00427 1.41076 1.43148 0.84946 0.79006 0.76762 0.77502 1.17827 1.20174 1.20239 1.23222 0.95309 0.89957 0.97730 1.48345 1.51571 1.28968 1.04850 1.16266 0.79109 0.83987 0.80295 1.90859 1.43153 1.24133 1.82903 1.22354 1.10597 0.89454 0.97834 1.24353 0.99513 0.99857 0.89075 1.75005 1.14687 1.00931 1.25101 1.78246 1.17413 1.21798 0.87240 1.46249 1.39651 1.12865 1.10627 0.68726 0.91505 0.93327 0.88932 0.86602 0.87057 0.73736 0.86732 0.86897 0.92107 0.91366 0.87435 0.75748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.11 71.98 0.66 -0.73 16 2 C 0.13 1.37 3.43 45.34 0.16 1.52 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.12 -0.72 6.11 31.78 0.19 -0.52 16 5 C 0.14 1.88 3.45 46.55 0.16 2.04 16 6 H 0.09 1.74 7.54 -2.39 -0.02 1.72 16 7 N -0.70 -10.65 5.21 -435.17 -2.27 -12.91 16 8 C 0.54 15.51 7.85 87.66 0.69 16.20 16 9 O -0.56 -21.88 15.50 -3.06 -0.05 -21.92 16 10 C -0.13 -4.34 6.16 71.23 0.44 -3.91 16 11 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 12 C -0.54 -29.22 9.50 67.95 0.65 -28.58 16 13 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 14 C 0.01 0.69 5.49 84.86 0.47 1.16 16 15 N -0.91 -54.41 13.22 21.65 0.29 -54.12 16 16 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 17 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 19 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 20 C 0.06 0.78 5.01 87.03 0.44 1.22 16 21 N -0.60 -8.45 3.07 -791.17 -2.43 -10.88 16 22 C 0.62 11.67 7.58 86.60 0.66 12.33 16 23 O -0.54 -12.68 16.19 -4.09 -0.07 -12.75 16 24 C -0.07 -1.29 6.90 40.40 0.28 -1.01 16 25 C 0.03 0.64 11.87 84.18 1.00 1.64 16 26 N -0.29 -7.24 12.35 -57.50 -0.71 -7.95 16 27 N -0.07 -1.58 13.35 37.02 0.49 -1.09 16 28 N -0.36 -6.74 6.36 -48.53 -0.31 -7.05 16 29 H 0.46 6.48 5.56 -219.90 -1.22 5.26 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.69 7.09 -2.39 -0.02 0.67 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 0.16 7.71 -2.39 -0.02 0.14 16 34 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.42 3.26 8.57 -92.71 -0.79 2.47 16 36 H 0.11 3.29 8.14 -2.40 -0.02 3.27 16 37 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 39 H 0.07 1.09 6.24 -2.39 -0.01 1.07 16 40 H 0.11 0.82 7.89 -2.38 -0.02 0.80 16 41 H 0.23 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -81.10 362.77 0.68 -80.42 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.92 Total: 11.98 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.77 Total: 1.37 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -4.93 Total: -94.00 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.11 Total: -34.67 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -81.10 0.68 -80.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338117679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.252 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds