Wall clock time and date at job start Tue Mar 31 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86970 * 2 1 4 4 C 1.54323 * 110.01170 * 121.10086 * 2 1 3 5 5 C 1.55157 * 102.94176 * 141.68309 * 4 2 1 6 6 H 1.08998 * 111.00556 * 82.57315 * 5 4 2 7 7 N 1.46501 * 111.00150 * 206.38520 * 5 4 2 8 8 C 1.34777 * 119.99726 * 204.99664 * 7 5 4 9 9 O 1.21289 * 119.99980 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00107 * 179.97438 * 8 7 5 11 11 S 1.80997 * 109.47312 * 180.02562 * 10 8 7 12 12 C 1.76204 * 99.99996 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00007 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99964 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99814 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47206 * 90.00019 * 16 14 12 18 18 H 1.48501 * 109.46913 * 209.99841 * 16 14 12 19 19 H 1.48500 * 109.47319 * 329.99609 * 16 14 12 20 20 C 1.55133 * 101.48516 * 324.33204 * 5 4 2 21 21 N 1.47021 * 109.88235 * 238.99014 * 2 1 3 22 22 C 1.34772 * 125.65351 * 61.44387 * 21 2 1 23 23 O 1.21624 * 119.99680 * 5.59490 * 22 21 2 24 24 C 1.47231 * 120.00230 * 185.58851 * 22 21 2 25 25 C 1.37016 * 127.18948 * 186.63901 * 24 22 21 26 26 N 1.33319 * 106.36835 * 180.27664 * 25 24 22 27 27 N 1.28512 * 109.44084 * 359.73366 * 26 25 24 28 28 N 1.28713 * 110.63829 * 0.02562 * 27 26 25 29 29 H 0.97005 * 126.03488 * 179.97438 * 28 27 26 30 30 H 1.08994 * 109.47176 * 179.55943 * 1 2 3 31 31 H 1.08997 * 109.47073 * 299.56239 * 1 2 3 32 32 H 1.09002 * 109.47125 * 59.55818 * 1 2 3 33 33 H 1.09006 * 110.71589 * 260.04436 * 4 2 1 34 34 H 1.08997 * 110.72140 * 23.13842 * 4 2 1 35 35 H 0.96994 * 119.99870 * 24.99960 * 7 5 4 36 36 H 1.09001 * 109.47369 * 300.00727 * 10 8 7 37 37 H 1.09003 * 109.46849 * 60.00694 * 10 8 7 38 38 H 0.96997 * 120.00471 * 179.97438 * 15 14 12 39 39 H 1.08993 * 110.49480 * 278.45437 * 20 5 4 40 40 H 1.09000 * 110.34040 * 156.05636 * 20 5 4 41 41 H 1.07997 * 126.80794 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2416 5 6 3.2918 -1.5107 0.6893 6 1 4.1682 -0.8634 0.6564 7 7 3.5616 -2.7154 1.4781 8 6 4.8062 -3.2310 1.5165 9 8 5.7030 -2.6974 0.8984 10 6 5.0839 -4.4698 2.3284 11 16 6.8334 -4.9093 2.1795 12 6 6.8750 -6.3481 3.1958 13 1 5.9738 -6.6929 3.6808 14 6 8.0663 -7.0378 3.3738 15 7 9.1649 -6.6173 2.7830 16 14 8.1106 -8.5627 4.4518 17 1 7.8280 -9.7626 3.6238 18 1 9.4546 -8.6931 5.0698 19 1 7.0845 -8.4446 5.5188 20 6 2.8130 -1.8793 -0.7396 21 7 2.0300 -0.7123 -1.1850 22 6 1.8049 -0.3602 -2.4663 23 8 1.2238 0.6781 -2.7184 24 6 2.2625 -1.2322 -3.5607 25 6 2.2266 -0.9638 -4.9038 26 7 2.7357 -2.0339 -5.5146 27 7 3.0731 -2.9082 -4.6352 28 7 2.8157 -2.4809 -3.4487 29 1 2.9805 -2.9600 -2.6214 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5070 0.8939 32 1 -0.3633 0.5207 -0.8860 33 1 2.3557 -0.0451 2.0189 34 1 1.3092 -1.4449 1.6197 35 1 2.8444 -3.1419 1.9727 36 1 4.8452 -4.2796 3.3748 37 1 4.4699 -5.2914 1.9592 38 1 9.9975 -7.0990 2.9076 39 1 2.1853 -2.7699 -0.7138 40 1 3.6681 -2.0357 -1.3971 41 1 1.8547 -0.0657 -5.3744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338117680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:55 Heat of formation + Delta-G solvation = 37.034546 kcal Electronic energy + Delta-G solvation = -26494.397205 eV Core-core repulsion = 22538.305886 eV Total energy + Delta-G solvation = -3956.091320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.74223 -40.88525 -39.42403 -37.91999 -34.60192 -34.16178 -32.58488 -32.52067 -31.27594 -31.00566 -28.70357 -26.72145 -25.59696 -25.05579 -23.51406 -22.69477 -21.86762 -20.89287 -20.41644 -18.48818 -18.05082 -17.48958 -17.23552 -16.69527 -16.39913 -16.33795 -15.34773 -15.28920 -14.88645 -14.76094 -14.55667 -14.28297 -14.05205 -13.94356 -13.50256 -13.33809 -13.05029 -12.68426 -12.54631 -12.50395 -12.37448 -11.95695 -11.64181 -11.60426 -11.35319 -11.14593 -11.11375 -11.10403 -10.84460 -10.66834 -9.93681 -9.92532 -9.71015 -9.46156 -9.23894 -9.14740 -8.37095 -6.62147 -6.30897 -4.03002 0.48580 1.92806 1.93868 2.23418 2.58058 2.74679 2.80505 3.16101 3.19354 3.24071 3.44801 3.69752 3.86448 3.94139 4.11094 4.24269 4.37398 4.47150 4.53665 4.59581 4.72722 4.82504 4.84856 4.91675 5.04769 5.05848 5.13224 5.27030 5.38736 5.51073 5.58214 5.62772 5.67679 5.70503 5.80359 5.96647 6.17561 6.23623 6.71628 7.35214 7.40290 7.50565 7.90708 8.25599 8.28988 9.14684 10.76466 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002464 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.456933 B =11361.511020 C =12693.731027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.114 0.886 7 N -0.730 5.730 8 C 0.533 3.467 9 O -0.511 6.511 10 C -0.155 4.155 11 S -0.058 6.058 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.064 3.936 21 N -0.610 5.610 22 C 0.616 3.384 23 O -0.510 6.510 24 C -0.069 4.069 25 C 0.035 3.965 26 N -0.270 5.270 27 N -0.041 5.041 28 N -0.375 5.375 29 H 0.451 0.549 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.403 0.597 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.269 0.731 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.780 12.105 -4.699 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.174 4.174 5 C 0.036 3.964 6 H 0.132 0.868 7 N -0.385 5.385 8 C 0.320 3.680 9 O -0.384 6.384 10 C -0.305 4.305 11 S 0.168 5.832 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.061 4.061 21 N -0.345 5.345 22 C 0.402 3.598 23 O -0.384 6.384 24 C -0.204 4.204 25 C -0.125 4.125 26 N -0.135 5.135 27 N -0.023 5.023 28 N -0.106 5.106 29 H 0.303 0.697 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -17.857 12.476 -6.908 22.853 hybrid contribution -1.560 -1.415 2.818 3.518 sum -19.417 11.061 -4.090 22.718 Atomic orbital electron populations 1.22157 0.93880 1.02636 1.03508 1.21623 0.95106 0.96857 0.82730 0.89353 1.23085 0.96998 1.00203 0.97093 1.21905 0.98808 0.87677 0.87991 0.86812 1.45944 1.11608 1.28987 1.51944 1.20485 0.81453 0.85184 0.80882 1.90736 1.43939 1.60510 1.43197 1.23543 1.08315 0.96784 1.01902 1.85441 0.97708 1.34676 1.65377 1.22839 0.98227 1.12967 1.34544 0.90869 1.24998 0.94608 0.97986 0.95941 1.70004 0.99753 1.39234 1.41168 0.86160 0.77726 0.81631 0.79943 1.20216 1.20698 1.19680 1.23151 0.95281 0.89180 0.98511 1.48351 1.52443 1.28699 1.05012 1.16316 0.79270 0.84376 0.79799 1.90869 1.41805 1.23112 1.82567 1.22267 1.10811 0.89574 0.97705 1.23932 1.00040 0.99688 0.88811 1.75036 1.13947 1.00012 1.24503 1.78288 1.16415 1.21123 0.86455 1.46285 1.40554 1.13041 1.10747 0.69670 0.92273 0.90943 0.91024 0.88470 0.89311 0.76192 0.88948 0.89015 0.92067 0.90055 0.90024 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.11 37.16 0.34 -0.62 16 2 C 0.14 0.89 3.43 -66.95 -0.23 0.66 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.14 -0.67 6.12 -24.90 -0.15 -0.83 16 5 C 0.14 1.14 3.44 -65.66 -0.23 0.91 16 6 H 0.11 1.16 7.54 -51.93 -0.39 0.77 16 7 N -0.73 -6.73 5.20 -51.61 -0.27 -7.00 16 8 C 0.53 8.09 7.85 -10.99 -0.09 8.00 16 9 O -0.51 -9.90 15.50 5.55 0.09 -9.81 16 10 C -0.15 -2.70 6.16 36.00 0.22 -2.48 16 11 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 12 C -0.54 -14.55 9.50 30.94 0.29 -14.26 16 13 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 14 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -25.31 13.22 55.49 0.73 -24.57 16 16 Si 0.92 20.64 29.55 -169.99 -5.02 15.61 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C 0.06 0.47 5.00 -2.41 -0.01 0.46 16 21 N -0.61 -4.82 3.06 -164.21 -0.50 -5.32 16 22 C 0.62 6.13 7.58 -12.61 -0.10 6.03 16 23 O -0.51 -6.20 16.17 5.26 0.09 -6.12 16 24 C -0.07 -0.69 6.91 -82.33 -0.57 -1.25 16 25 C 0.04 0.36 11.87 -17.35 -0.21 0.15 16 26 N -0.27 -3.33 12.35 30.48 0.38 -2.95 16 27 N -0.04 -0.49 13.35 60.35 0.81 0.31 16 28 N -0.37 -3.60 6.36 33.31 0.21 -3.39 16 29 H 0.45 3.40 5.54 -190.33 -1.05 2.35 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.57 7.06 -51.93 -0.37 0.20 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.32 7.72 -51.93 -0.40 -0.09 16 35 H 0.40 2.52 8.57 -40.82 -0.35 2.17 16 36 H 0.09 1.48 8.14 -51.91 -0.42 1.06 16 37 H 0.09 1.45 8.14 -51.91 -0.42 1.02 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 0.45 7.91 -51.93 -0.41 0.04 16 40 H 0.08 0.69 6.21 -51.93 -0.32 0.37 16 41 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -35.54 362.68 -6.86 -42.40 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.80 Total: 0.34 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.82 Total: -1.28 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 1.36 Total: -42.92 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.17 Total: -15.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.54 -6.86 -42.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338117680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.435 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds