Wall clock time and date at job start Tue Mar 31 2020 23:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86970 * 2 1 4 4 C 1.54323 * 110.01170 * 121.10086 * 2 1 3 5 5 C 1.55157 * 102.94176 * 141.68309 * 4 2 1 6 6 H 1.08998 * 111.00556 * 82.57315 * 5 4 2 7 7 N 1.46501 * 111.00150 * 206.38520 * 5 4 2 8 8 C 1.34777 * 119.99726 * 204.99664 * 7 5 4 9 9 O 1.21289 * 119.99980 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00107 * 179.97438 * 8 7 5 11 11 S 1.80997 * 109.47312 * 180.02562 * 10 8 7 12 12 C 1.76204 * 99.99996 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00007 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99964 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99814 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47206 * 90.00019 * 16 14 12 18 18 H 1.48501 * 109.46913 * 209.99841 * 16 14 12 19 19 H 1.48500 * 109.47319 * 329.99609 * 16 14 12 20 20 C 1.55133 * 101.48516 * 324.33204 * 5 4 2 21 21 N 1.47021 * 109.88235 * 238.99014 * 2 1 3 22 22 C 1.34772 * 125.65351 * 61.44387 * 21 2 1 23 23 O 1.21624 * 119.99680 * 5.59490 * 22 21 2 24 24 C 1.47231 * 120.00230 * 185.58851 * 22 21 2 25 25 C 1.37016 * 127.18948 * 186.63901 * 24 22 21 26 26 N 1.33319 * 106.36835 * 180.27664 * 25 24 22 27 27 N 1.28512 * 109.44084 * 359.73366 * 26 25 24 28 28 N 1.28713 * 110.63829 * 0.02562 * 27 26 25 29 29 H 0.97005 * 126.03488 * 179.97438 * 28 27 26 30 30 H 1.08994 * 109.47176 * 179.55943 * 1 2 3 31 31 H 1.08997 * 109.47073 * 299.56239 * 1 2 3 32 32 H 1.09002 * 109.47125 * 59.55818 * 1 2 3 33 33 H 1.09006 * 110.71589 * 260.04436 * 4 2 1 34 34 H 1.08997 * 110.72140 * 23.13842 * 4 2 1 35 35 H 0.96994 * 119.99870 * 24.99960 * 7 5 4 36 36 H 1.09001 * 109.47369 * 300.00727 * 10 8 7 37 37 H 1.09003 * 109.46849 * 60.00694 * 10 8 7 38 38 H 0.96997 * 120.00471 * 179.97438 * 15 14 12 39 39 H 1.08993 * 110.49480 * 278.45437 * 20 5 4 40 40 H 1.09000 * 110.34040 * 156.05636 * 20 5 4 41 41 H 1.07997 * 126.80794 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2416 5 6 3.2918 -1.5107 0.6893 6 1 4.1682 -0.8634 0.6564 7 7 3.5616 -2.7154 1.4781 8 6 4.8062 -3.2310 1.5165 9 8 5.7030 -2.6974 0.8984 10 6 5.0839 -4.4698 2.3284 11 16 6.8334 -4.9093 2.1795 12 6 6.8750 -6.3481 3.1958 13 1 5.9738 -6.6929 3.6808 14 6 8.0663 -7.0378 3.3738 15 7 9.1649 -6.6173 2.7830 16 14 8.1106 -8.5627 4.4518 17 1 7.8280 -9.7626 3.6238 18 1 9.4546 -8.6931 5.0698 19 1 7.0845 -8.4446 5.5188 20 6 2.8130 -1.8793 -0.7396 21 7 2.0300 -0.7123 -1.1850 22 6 1.8049 -0.3602 -2.4663 23 8 1.2238 0.6781 -2.7184 24 6 2.2625 -1.2322 -3.5607 25 6 2.2266 -0.9638 -4.9038 26 7 2.7357 -2.0339 -5.5146 27 7 3.0731 -2.9082 -4.6352 28 7 2.8157 -2.4809 -3.4487 29 1 2.9805 -2.9600 -2.6214 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5070 0.8939 32 1 -0.3633 0.5207 -0.8860 33 1 2.3557 -0.0451 2.0189 34 1 1.3092 -1.4449 1.6197 35 1 2.8444 -3.1419 1.9727 36 1 4.8452 -4.2796 3.3748 37 1 4.4699 -5.2914 1.9592 38 1 9.9975 -7.0990 2.9076 39 1 2.1853 -2.7699 -0.7138 40 1 3.6681 -2.0357 -1.3971 41 1 1.8547 -0.0657 -5.3744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338117680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:54 Heat of formation + Delta-G solvation = 9.199579 kcal Electronic energy + Delta-G solvation = -26495.604220 eV Core-core repulsion = 22538.305886 eV Total energy + Delta-G solvation = -3957.298334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.57379 -41.62723 -40.49895 -38.76692 -35.55411 -34.97570 -34.57296 -33.29886 -32.01340 -31.99466 -29.81166 -27.64819 -27.29075 -25.81286 -24.32999 -23.51128 -22.58453 -21.83674 -21.20983 -19.85062 -19.20972 -18.33326 -18.05894 -17.69293 -17.31955 -17.28601 -16.86827 -16.44121 -16.29834 -15.74198 -15.56801 -15.23462 -14.90614 -14.69822 -14.60048 -14.42937 -14.11911 -13.59033 -13.48446 -13.35781 -13.15411 -13.05501 -12.89759 -12.75012 -12.60149 -12.44249 -12.15879 -11.96981 -11.89410 -11.70447 -11.45628 -11.13646 -11.00072 -10.77526 -10.32635 -10.24905 -9.96501 -8.64722 -8.34227 -6.11284 -0.32236 1.07659 1.17080 1.28579 1.42704 1.45312 1.53158 1.55621 1.62971 1.80784 2.21647 2.28900 2.94118 3.00627 3.22214 3.25006 3.34298 3.53961 3.76476 3.86296 3.87798 3.96871 4.00209 4.10432 4.15873 4.34519 4.37369 4.55121 4.56769 4.58744 4.84246 4.86834 4.88799 5.07240 5.16952 5.32819 5.37714 5.43335 5.44513 6.00517 6.20554 6.46225 6.64840 7.05687 7.08089 7.20607 8.74615 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002464 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.456933 B =11361.511020 C =12693.731027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.140 3.860 6 H 0.090 0.910 7 N -0.698 5.698 8 C 0.539 3.461 9 O -0.560 6.560 10 C -0.131 4.131 11 S -0.154 6.154 12 C -0.543 4.543 13 H 0.085 0.915 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.995 3.005 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.256 1.256 20 C 0.063 3.937 21 N -0.604 5.604 22 C 0.617 3.383 23 O -0.535 6.535 24 C -0.067 4.067 25 C 0.032 3.968 26 N -0.293 5.293 27 N -0.065 5.065 28 N -0.361 5.361 29 H 0.459 0.541 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.424 0.576 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.270 0.730 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.544 11.618 -2.772 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.034 3.966 6 H 0.108 0.892 7 N -0.353 5.353 8 C 0.325 3.675 9 O -0.437 6.437 10 C -0.282 4.282 11 S 0.073 5.927 12 C -0.691 4.691 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.817 3.183 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.180 1.180 20 C -0.062 4.062 21 N -0.338 5.338 22 C 0.403 3.597 23 O -0.411 6.411 24 C -0.202 4.202 25 C -0.128 4.128 26 N -0.157 5.157 27 N -0.047 5.047 28 N -0.094 5.094 29 H 0.313 0.687 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.263 0.737 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -20.683 11.974 -4.947 24.406 hybrid contribution -0.816 -1.146 2.224 2.631 sum -21.499 10.828 -2.723 24.225 Atomic orbital electron populations 1.22107 0.92998 1.03058 1.03375 1.21816 0.95758 0.96752 0.82470 0.89923 1.23074 0.95685 1.00334 0.96488 1.21932 0.99420 0.86768 0.88516 0.89191 1.45527 1.09953 1.28722 1.51075 1.20087 0.82736 0.84459 0.80219 1.90736 1.45965 1.61710 1.45305 1.23385 1.02228 0.98753 1.03879 1.85621 1.05828 1.35284 1.65941 1.23202 0.98744 1.12993 1.34187 0.89727 1.26092 0.94183 1.01510 0.97391 1.70175 1.00503 1.41031 1.43133 0.84997 0.77967 0.77159 0.78150 1.19473 1.20637 1.18027 1.23196 0.95351 0.89903 0.97747 1.48358 1.51735 1.28798 1.04864 1.16267 0.79106 0.83992 0.80302 1.90860 1.43149 1.24082 1.82969 1.22361 1.10490 0.89547 0.97845 1.24356 0.99526 0.99868 0.89055 1.75004 1.14789 1.00775 1.25155 1.78244 1.17545 1.21717 0.87200 1.46260 1.39672 1.12908 1.10568 0.68720 0.91483 0.88959 0.93327 0.87057 0.86569 0.73739 0.86911 0.86720 0.92100 0.87382 0.91358 0.75750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.11 71.98 0.66 -0.73 16 2 C 0.13 1.37 3.43 45.34 0.16 1.52 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.12 -0.71 6.12 31.78 0.19 -0.52 16 5 C 0.14 1.87 3.44 46.46 0.16 2.03 16 6 H 0.09 1.74 7.54 -2.39 -0.02 1.72 16 7 N -0.70 -10.64 5.20 -435.59 -2.26 -12.90 16 8 C 0.54 15.50 7.85 87.66 0.69 16.19 16 9 O -0.56 -21.87 15.50 -3.06 -0.05 -21.92 16 10 C -0.13 -4.35 6.16 71.23 0.44 -3.91 16 11 S -0.15 -7.91 20.57 -56.49 -1.16 -9.07 16 12 C -0.54 -29.29 9.50 67.95 0.65 -28.65 16 13 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 14 C 0.01 0.71 5.49 84.86 0.47 1.18 16 15 N -0.91 -54.46 13.22 21.65 0.29 -54.17 16 16 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 C 0.06 0.79 5.00 86.93 0.43 1.22 16 21 N -0.60 -8.46 3.06 -791.67 -2.43 -10.89 16 22 C 0.62 11.68 7.58 86.61 0.66 12.34 16 23 O -0.54 -12.69 16.17 -4.11 -0.07 -12.76 16 24 C -0.07 -1.30 6.91 40.41 0.28 -1.02 16 25 C 0.03 0.64 11.87 84.18 1.00 1.64 16 26 N -0.29 -7.25 12.35 -57.50 -0.71 -7.96 16 27 N -0.07 -1.59 13.35 37.02 0.49 -1.09 16 28 N -0.36 -6.76 6.36 -48.52 -0.31 -7.07 16 29 H 0.46 6.51 5.54 -219.89 -1.22 5.29 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.69 7.06 -2.39 -0.02 0.67 16 33 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.12 0.16 7.72 -2.39 -0.02 0.14 16 35 H 0.42 3.25 8.57 -92.71 -0.79 2.46 16 36 H 0.11 3.30 8.14 -2.40 -0.02 3.28 16 37 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.11 0.82 7.91 -2.39 -0.02 0.81 16 40 H 0.07 1.09 6.21 -2.39 -0.01 1.07 16 41 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -81.11 362.68 0.68 -80.42 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.91 Total: 12.13 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 5.77 Total: 1.31 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -4.93 Total: -94.08 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.11 Total: -34.68 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -81.11 0.68 -80.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338117680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.623 kcal (2) G-P(sol) polarization free energy of solvation -81.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds