Wall clock time and date at job start Tue Mar 31 2020 23:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.87261 * 2 1 4 4 C 1.54320 * 109.88432 * 121.01479 * 2 1 3 5 5 C 1.55156 * 102.94389 * 141.61256 * 4 2 1 6 6 H 1.08994 * 111.00634 * 206.38525 * 5 4 2 7 7 N 1.46502 * 111.00244 * 82.57241 * 5 4 2 8 8 C 1.34783 * 119.99749 * 155.00251 * 7 5 4 9 9 O 1.21276 * 120.00121 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99763 * 179.97438 * 8 7 5 11 11 S 1.81003 * 109.46981 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99905 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00617 * 0.02562 * 12 11 10 14 14 C 1.38802 * 120.00275 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99355 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00520 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47403 * 89.99552 * 16 14 12 18 18 H 1.48494 * 109.47162 * 209.99984 * 16 14 12 19 19 H 1.48504 * 109.46879 * 329.99934 * 16 14 12 20 20 C 1.54904 * 101.58211 * 324.50181 * 5 4 2 21 21 N 1.47017 * 109.88400 * 238.82765 * 2 1 3 22 22 C 1.34778 * 125.65195 * 61.59177 * 21 2 1 23 23 O 1.21617 * 119.99649 * 357.70361 * 22 21 2 24 24 C 1.47229 * 120.00248 * 177.70158 * 22 21 2 25 25 C 1.37004 * 127.18977 * 187.64138 * 24 22 21 26 26 N 1.33317 * 106.37250 * 180.02562 * 25 24 22 27 27 N 1.28513 * 109.44057 * 359.97438 * 26 25 24 28 28 N 1.28714 * 110.63905 * 359.72119 * 27 26 25 29 29 H 0.96992 * 126.03961 * 180.29699 * 28 27 26 30 30 H 1.09004 * 109.47127 * 298.97757 * 1 2 3 31 31 H 1.08999 * 109.46967 * 178.98458 * 1 2 3 32 32 H 1.08991 * 109.47185 * 58.98644 * 1 2 3 33 33 H 1.08997 * 110.72253 * 259.97530 * 4 2 1 34 34 H 1.09003 * 110.72039 * 23.24858 * 4 2 1 35 35 H 0.96997 * 120.00079 * 335.00135 * 7 5 4 36 36 H 1.09003 * 109.47573 * 300.00159 * 10 8 7 37 37 H 1.09007 * 109.47342 * 60.00277 * 10 8 7 38 38 H 0.97002 * 119.99542 * 179.97438 * 15 14 12 39 39 H 1.09002 * 110.37231 * 155.84838 * 20 5 4 40 40 H 1.09001 * 110.36669 * 278.05923 * 20 5 4 41 41 H 1.07997 * 126.81606 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 3.2877 -1.5132 0.6945 6 1 3.4857 -2.4087 1.2834 7 7 4.4674 -0.6457 0.6503 8 6 5.7020 -1.1842 0.6996 9 8 5.8363 -2.3868 0.7810 10 6 6.9156 -0.2919 0.6535 11 16 8.4130 -1.3052 0.7380 12 6 9.6407 -0.0433 0.6681 13 1 9.3462 0.9933 0.5963 14 6 10.9864 -0.3813 0.7055 15 7 11.3453 -1.6447 0.7935 16 14 12.2880 0.9565 0.6321 17 1 12.6172 1.4029 2.0096 18 1 13.5103 0.4227 -0.0206 19 1 11.7711 2.1076 -0.1509 20 6 2.8147 -1.8803 -0.7341 21 7 2.0300 -0.7156 -1.1829 22 6 1.8072 -0.3655 -2.4652 23 8 1.1065 0.5952 -2.7202 24 6 2.4121 -1.1461 -3.5572 25 6 2.4061 -0.8435 -4.8934 26 7 3.0679 -1.8264 -5.5043 27 7 3.4630 -2.6829 -4.6315 28 7 3.1041 -2.3240 -3.4487 29 1 3.2885 -2.8038 -2.6262 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 -1.0275 -0.0182 32 1 -0.3633 0.5294 -0.8807 33 1 2.3529 -0.0432 2.0201 34 1 1.3051 -1.4437 1.6202 35 1 4.3600 0.3161 0.5855 36 1 6.9133 0.2769 -0.2763 37 1 6.8939 0.3949 1.4997 38 1 12.2858 -1.8810 0.8192 39 1 3.6718 -2.0356 -1.3894 40 1 2.1904 -2.7735 -0.7092 41 1 1.9548 0.0200 -5.3594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338117681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:00 Heat of formation + Delta-G solvation = 40.341776 kcal Electronic energy + Delta-G solvation = -26912.660714 eV Core-core repulsion = 22956.712806 eV Total energy + Delta-G solvation = -3955.947907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.69937 -40.94977 -39.35495 -37.88342 -34.44623 -34.07362 -32.55076 -32.49970 -31.22225 -31.06345 -28.70795 -26.76356 -25.56954 -25.08137 -23.48519 -22.67952 -21.83925 -20.74156 -20.52759 -18.39378 -18.00204 -17.51687 -17.21036 -16.65700 -16.53143 -15.87858 -15.65432 -15.26983 -14.86621 -14.70999 -14.55141 -14.24852 -13.95893 -13.78462 -13.58513 -13.24011 -12.85323 -12.76528 -12.57633 -12.47184 -12.19046 -11.96296 -11.84203 -11.53309 -11.29064 -11.12382 -11.09383 -11.05762 -10.82248 -10.59374 -9.90492 -9.89348 -9.69694 -9.51748 -9.14675 -9.09771 -8.35730 -6.59981 -6.29119 -4.00870 0.53747 1.98263 1.99810 2.32249 2.62619 2.76364 2.79270 3.17943 3.21705 3.26172 3.50074 3.62305 3.85397 3.94828 4.13251 4.28311 4.35716 4.52033 4.61159 4.66070 4.74330 4.85269 4.87651 4.93726 5.06572 5.06805 5.17332 5.27950 5.36299 5.53707 5.59335 5.63522 5.70808 5.72826 5.85448 5.99737 6.21669 6.28427 6.75034 7.38051 7.45019 7.52798 7.95815 8.27747 8.31034 9.16675 10.78288 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.002901 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.968418 B = 9648.440630 C =10817.707540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.085 0.915 4 C -0.135 4.135 5 C 0.140 3.860 6 H 0.121 0.879 7 N -0.730 5.730 8 C 0.535 3.465 9 O -0.513 6.513 10 C -0.156 4.156 11 S -0.057 6.057 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.272 1.272 20 C 0.064 3.936 21 N -0.609 5.609 22 C 0.615 3.385 23 O -0.511 6.511 24 C -0.069 4.069 25 C 0.035 3.965 26 N -0.270 5.270 27 N -0.041 5.041 28 N -0.376 5.376 29 H 0.451 0.549 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.401 0.599 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.269 0.731 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.864 2.413 -0.689 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.103 0.897 4 C -0.174 4.174 5 C 0.033 3.967 6 H 0.139 0.861 7 N -0.385 5.385 8 C 0.322 3.678 9 O -0.387 6.387 10 C -0.306 4.306 11 S 0.169 5.831 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.060 4.060 21 N -0.344 5.344 22 C 0.401 3.599 23 O -0.385 6.385 24 C -0.203 4.203 25 C -0.125 4.125 26 N -0.135 5.135 27 N -0.023 5.023 28 N -0.109 5.109 29 H 0.305 0.695 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -23.169 -0.175 -1.695 23.231 hybrid contribution 0.345 3.110 0.949 3.270 sum -22.824 2.935 -0.745 23.024 Atomic orbital electron populations 1.22159 0.93891 1.02652 1.03478 1.21677 0.95252 0.96540 0.83285 0.89739 1.23139 0.96852 1.00514 0.96884 1.21896 0.85244 0.95916 0.93636 0.86104 1.45994 1.04745 1.10274 1.77472 1.20433 0.83619 0.89192 0.74594 1.90711 1.85889 1.15013 1.47074 1.23547 0.98787 1.03201 1.05069 1.85371 0.91558 1.09832 1.96338 1.22849 0.92647 0.94085 1.59008 0.90900 1.24993 0.97872 0.96242 0.94385 1.70010 1.17567 1.16141 1.46479 0.86159 0.80086 0.80792 0.78439 1.20209 1.20676 1.19662 1.23226 0.95149 0.89458 0.98214 1.48444 1.52375 1.28612 1.04944 1.16325 0.80328 0.83348 0.79851 1.90862 1.37772 1.27334 1.82534 1.22265 1.07578 0.92652 0.97847 1.23923 0.99495 1.00165 0.88920 1.75032 1.12486 1.01409 1.24535 1.78274 1.16793 1.20508 0.86767 1.46462 1.36078 1.17330 1.11037 0.69549 0.91156 0.92284 0.90850 0.88422 0.88424 0.76436 0.89227 0.88999 0.92094 0.90409 0.89178 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.09 37.16 0.34 -0.64 16 2 C 0.13 0.84 3.47 -66.96 -0.23 0.61 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.14 -0.63 6.07 -24.90 -0.15 -0.78 16 5 C 0.14 1.05 3.43 -65.78 -0.23 0.82 16 6 H 0.12 1.00 7.54 -51.93 -0.39 0.61 16 7 N -0.73 -7.39 5.19 -51.73 -0.27 -7.66 16 8 C 0.53 8.42 7.85 -10.98 -0.09 8.34 16 9 O -0.51 -9.87 15.50 5.56 0.09 -9.79 16 10 C -0.16 -2.87 6.16 36.00 0.22 -2.65 16 11 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 12 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 16 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.06 0.45 5.25 -2.53 -0.01 0.44 16 21 N -0.61 -4.75 3.07 -164.35 -0.50 -5.25 16 22 C 0.62 6.27 7.64 -12.61 -0.10 6.18 16 23 O -0.51 -6.37 15.90 5.26 0.08 -6.29 16 24 C -0.07 -0.72 6.93 -82.33 -0.57 -1.29 16 25 C 0.03 0.38 11.87 -17.35 -0.21 0.17 16 26 N -0.27 -3.51 12.35 30.47 0.38 -3.14 16 27 N -0.04 -0.52 13.35 60.35 0.81 0.28 16 28 N -0.38 -3.80 6.39 33.31 0.21 -3.58 16 29 H 0.45 3.54 5.37 -190.34 -1.02 2.52 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.60 6.83 -51.93 -0.35 0.25 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.32 7.85 -51.93 -0.41 -0.09 16 35 H 0.40 3.31 8.67 -40.82 -0.35 2.96 16 36 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 37 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.08 0.66 5.50 -51.93 -0.29 0.37 16 40 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -35.90 362.07 -6.82 -42.72 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.74 Total: 1.20 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.82 Total: -1.42 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 1.36 Total: -44.21 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.17 Total: -16.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.90 -6.82 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338117681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.063 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds