Wall clock time and date at job start Tue Mar 31 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.87261 * 2 1 4 4 C 1.54320 * 109.88432 * 121.01479 * 2 1 3 5 5 C 1.55156 * 102.94389 * 141.61256 * 4 2 1 6 6 H 1.08994 * 111.00634 * 206.38525 * 5 4 2 7 7 N 1.46502 * 111.00244 * 82.57241 * 5 4 2 8 8 C 1.34783 * 119.99749 * 155.00251 * 7 5 4 9 9 O 1.21276 * 120.00121 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99763 * 179.97438 * 8 7 5 11 11 S 1.81003 * 109.46981 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99905 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00617 * 0.02562 * 12 11 10 14 14 C 1.38802 * 120.00275 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99355 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00520 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47403 * 89.99552 * 16 14 12 18 18 H 1.48494 * 109.47162 * 209.99984 * 16 14 12 19 19 H 1.48504 * 109.46879 * 329.99934 * 16 14 12 20 20 C 1.54904 * 101.58211 * 324.50181 * 5 4 2 21 21 N 1.47017 * 109.88400 * 238.82765 * 2 1 3 22 22 C 1.34778 * 125.65195 * 61.59177 * 21 2 1 23 23 O 1.21617 * 119.99649 * 357.70361 * 22 21 2 24 24 C 1.47229 * 120.00248 * 177.70158 * 22 21 2 25 25 C 1.37004 * 127.18977 * 187.64138 * 24 22 21 26 26 N 1.33317 * 106.37250 * 180.02562 * 25 24 22 27 27 N 1.28513 * 109.44057 * 359.97438 * 26 25 24 28 28 N 1.28714 * 110.63905 * 359.72119 * 27 26 25 29 29 H 0.96992 * 126.03961 * 180.29699 * 28 27 26 30 30 H 1.09004 * 109.47127 * 298.97757 * 1 2 3 31 31 H 1.08999 * 109.46967 * 178.98458 * 1 2 3 32 32 H 1.08991 * 109.47185 * 58.98644 * 1 2 3 33 33 H 1.08997 * 110.72253 * 259.97530 * 4 2 1 34 34 H 1.09003 * 110.72039 * 23.24858 * 4 2 1 35 35 H 0.96997 * 120.00079 * 335.00135 * 7 5 4 36 36 H 1.09003 * 109.47573 * 300.00159 * 10 8 7 37 37 H 1.09007 * 109.47342 * 60.00277 * 10 8 7 38 38 H 0.97002 * 119.99542 * 179.97438 * 15 14 12 39 39 H 1.09002 * 110.37231 * 155.84838 * 20 5 4 40 40 H 1.09001 * 110.36669 * 278.05923 * 20 5 4 41 41 H 1.07997 * 126.81606 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 3.2877 -1.5132 0.6945 6 1 3.4857 -2.4087 1.2834 7 7 4.4674 -0.6457 0.6503 8 6 5.7020 -1.1842 0.6996 9 8 5.8363 -2.3868 0.7810 10 6 6.9156 -0.2919 0.6535 11 16 8.4130 -1.3052 0.7380 12 6 9.6407 -0.0433 0.6681 13 1 9.3462 0.9933 0.5963 14 6 10.9864 -0.3813 0.7055 15 7 11.3453 -1.6447 0.7935 16 14 12.2880 0.9565 0.6321 17 1 12.6172 1.4029 2.0096 18 1 13.5103 0.4227 -0.0206 19 1 11.7711 2.1076 -0.1509 20 6 2.8147 -1.8803 -0.7341 21 7 2.0300 -0.7156 -1.1829 22 6 1.8072 -0.3655 -2.4652 23 8 1.1065 0.5952 -2.7202 24 6 2.4121 -1.1461 -3.5572 25 6 2.4061 -0.8435 -4.8934 26 7 3.0679 -1.8264 -5.5043 27 7 3.4630 -2.6829 -4.6315 28 7 3.1041 -2.3240 -3.4487 29 1 3.2885 -2.8038 -2.6262 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 -1.0275 -0.0182 32 1 -0.3633 0.5294 -0.8807 33 1 2.3529 -0.0432 2.0201 34 1 1.3051 -1.4437 1.6202 35 1 4.3600 0.3161 0.5855 36 1 6.9133 0.2769 -0.2763 37 1 6.8939 0.3949 1.4997 38 1 12.2858 -1.8810 0.8192 39 1 3.6718 -2.0356 -1.3894 40 1 2.1904 -2.7735 -0.7092 41 1 1.9548 0.0200 -5.3594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338117681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:59 Heat of formation + Delta-G solvation = 12.330721 kcal Electronic energy + Delta-G solvation = -26913.875364 eV Core-core repulsion = 22956.712806 eV Total energy + Delta-G solvation = -3957.162558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.56805 -41.69654 -40.43939 -38.74877 -35.38195 -34.93767 -34.60075 -33.27928 -32.05551 -31.96594 -29.89159 -27.67530 -27.31388 -25.83794 -24.33207 -23.46633 -22.64013 -21.75408 -21.23112 -19.87797 -19.13070 -18.28310 -18.10255 -17.75619 -17.51444 -16.89803 -16.79593 -16.60996 -16.30072 -15.86535 -15.52438 -15.17572 -14.89098 -14.75090 -14.53581 -14.43370 -13.91879 -13.65712 -13.39223 -13.27867 -13.18590 -13.13700 -12.91183 -12.65860 -12.62305 -12.38334 -12.33104 -11.94683 -11.83526 -11.72587 -11.39001 -11.16128 -11.00435 -10.76602 -10.41082 -10.30499 -9.85390 -8.67473 -8.37178 -6.14254 -0.30116 1.09022 1.23655 1.24869 1.40360 1.44925 1.53079 1.55073 1.61832 1.83180 2.18509 2.25925 2.91739 2.97457 3.22237 3.26299 3.30660 3.56445 3.76531 3.87842 3.92039 3.96355 4.05683 4.13251 4.23752 4.28202 4.37462 4.48995 4.57371 4.69500 4.82236 4.86084 4.93649 5.07528 5.21123 5.36129 5.39953 5.41677 5.46088 6.04208 6.17382 6.39561 6.69033 7.05042 7.06769 7.15718 8.71710 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.002901 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.968418 B = 9648.440630 C =10817.707540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.134 3.866 6 H 0.119 0.881 7 N -0.706 5.706 8 C 0.541 3.459 9 O -0.553 6.553 10 C -0.135 4.135 11 S -0.143 6.143 12 C -0.549 4.549 13 H 0.080 0.920 14 C 0.016 3.984 15 N -0.909 5.909 16 Si 0.994 3.006 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.261 1.261 20 C 0.062 3.938 21 N -0.601 5.601 22 C 0.616 3.384 23 O -0.537 6.537 24 C -0.066 4.066 25 C 0.029 3.971 26 N -0.294 5.294 27 N -0.067 5.067 28 N -0.362 5.362 29 H 0.459 0.541 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.414 0.586 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.411 4.035 0.492 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.028 3.972 6 H 0.137 0.863 7 N -0.360 5.360 8 C 0.327 3.673 9 O -0.430 6.430 10 C -0.286 4.286 11 S 0.084 5.916 12 C -0.697 4.697 13 H 0.098 0.902 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.816 3.184 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.185 1.185 20 C -0.062 4.062 21 N -0.335 5.335 22 C 0.402 3.598 23 O -0.413 6.413 24 C -0.201 4.201 25 C -0.131 4.131 26 N -0.158 5.158 27 N -0.049 5.049 28 N -0.097 5.097 29 H 0.315 0.685 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.251 0.749 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -24.755 1.457 -0.490 24.803 hybrid contribution 0.665 2.632 0.624 2.786 sum -24.090 4.089 0.134 24.435 Atomic orbital electron populations 1.22104 0.93370 1.02918 1.03221 1.21885 0.95676 0.96603 0.83076 0.89891 1.23142 0.95472 1.00707 0.96170 1.22135 0.84879 0.95929 0.94223 0.86278 1.45730 1.03729 1.11299 1.75209 1.19924 0.84532 0.88086 0.74802 1.90706 1.86529 1.16366 1.49421 1.23402 0.96274 1.02523 1.06433 1.85465 0.96114 1.13351 1.96630 1.23202 0.93389 0.94464 1.58645 0.90160 1.26068 1.00405 0.98684 0.93762 1.70166 1.18097 1.18524 1.47768 0.85009 0.76754 0.77694 0.78907 1.19149 1.20375 1.18457 1.23351 0.95206 0.90283 0.97387 1.48468 1.51623 1.28732 1.04663 1.16248 0.80165 0.82988 0.80412 1.90855 1.39031 1.28408 1.82967 1.22407 1.07166 0.92529 0.98031 1.24337 0.99173 1.00346 0.89274 1.74995 1.13392 1.02188 1.25271 1.78227 1.17963 1.21162 0.87573 1.46463 1.35222 1.17132 1.10836 0.68518 0.89229 0.91655 0.93374 0.86904 0.85918 0.74941 0.88091 0.87155 0.91973 0.91899 0.86066 0.75923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.09 71.98 0.65 -0.76 16 2 C 0.13 1.20 3.47 45.34 0.16 1.35 16 3 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 4 C -0.12 -0.60 6.07 31.78 0.19 -0.40 16 5 C 0.13 1.60 3.43 46.38 0.16 1.76 16 6 H 0.12 1.64 7.54 -2.39 -0.02 1.62 16 7 N -0.71 -12.50 5.19 -435.97 -2.26 -14.76 16 8 C 0.54 16.37 7.85 87.66 0.69 17.06 16 9 O -0.55 -21.18 15.50 -3.02 -0.05 -21.23 16 10 C -0.14 -4.86 6.16 71.24 0.44 -4.42 16 11 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16 12 C -0.55 -30.59 9.50 67.95 0.65 -29.95 16 13 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 14 C 0.02 0.89 5.49 84.86 0.47 1.35 16 15 N -0.91 -54.77 13.22 21.65 0.29 -54.48 16 16 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 C 0.06 0.71 5.25 86.85 0.46 1.16 16 21 N -0.60 -7.95 3.07 -792.13 -2.43 -10.38 16 22 C 0.62 11.68 7.64 86.61 0.66 12.35 16 23 O -0.54 -12.82 15.90 -4.09 -0.06 -12.89 16 24 C -0.07 -1.33 6.93 40.40 0.28 -1.05 16 25 C 0.03 0.62 11.87 84.18 1.00 1.62 16 26 N -0.29 -7.71 12.35 -57.51 -0.71 -8.42 16 27 N -0.07 -1.73 13.35 37.02 0.49 -1.23 16 28 N -0.36 -7.10 6.39 -48.52 -0.31 -7.41 16 29 H 0.46 6.82 5.37 -219.91 -1.18 5.64 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.71 6.83 -2.39 -0.02 0.70 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.12 0.16 7.85 -2.39 -0.02 0.14 16 35 H 0.41 5.49 8.67 -92.71 -0.80 4.68 16 36 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.06 0.96 5.50 -2.39 -0.01 0.95 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.22 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -80.94 362.07 0.74 -80.20 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.88 Total: 14.20 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.80 Total: 0.08 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -4.93 Total: -96.69 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.11 Total: -34.12 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal Total: -80.94 0.74 -80.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338117681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.529 kcal (2) G-P(sol) polarization free energy of solvation -80.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds