Wall clock time and date at job start Tue Mar 31 2020 23:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.99459 * 2 1 4 4 C 1.54322 * 109.88059 * 238.90040 * 2 1 3 5 5 C 1.55154 * 102.94313 * 262.77608 * 4 2 1 6 6 H 1.09000 * 111.00694 * 82.56987 * 5 4 2 7 7 N 1.46499 * 111.00645 * 206.42632 * 5 4 2 8 8 C 1.34775 * 119.99967 * 198.64484 * 7 5 4 9 9 O 1.21280 * 120.00365 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99734 * 180.02562 * 8 7 5 11 11 S 1.81003 * 109.47083 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00085 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99549 * 359.97438 * 12 11 10 14 14 C 1.38790 * 120.00243 * 179.97438 * 12 11 10 15 15 N 1.31635 * 119.99827 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00318 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46887 * 59.99849 * 16 14 12 18 18 H 1.48500 * 109.46963 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46678 * 299.99913 * 16 14 12 20 20 C 1.54916 * 101.58207 * 324.50107 * 5 4 2 21 21 N 1.47020 * 109.87841 * 121.09286 * 2 1 3 22 22 C 1.34775 * 125.64855 * 300.49460 * 21 2 1 23 23 O 1.21617 * 120.00064 * 357.52414 * 22 21 2 24 24 C 1.47240 * 119.99731 * 177.52223 * 22 21 2 25 25 C 1.37005 * 127.18445 * 187.31407 * 24 22 21 26 26 N 1.33322 * 106.36804 * 179.90544 * 25 24 22 27 27 N 1.28506 * 109.43736 * 0.37334 * 26 25 24 28 28 N 1.28711 * 110.64415 * 359.76037 * 27 26 25 29 29 H 0.96996 * 126.03808 * 180.02562 * 28 27 26 30 30 H 1.08999 * 109.47170 * 300.36033 * 1 2 3 31 31 H 1.09002 * 109.46860 * 60.36680 * 1 2 3 32 32 H 1.08998 * 109.46506 * 180.35948 * 1 2 3 33 33 H 1.08998 * 110.72474 * 21.14085 * 4 2 1 34 34 H 1.09003 * 110.71747 * 144.23362 * 4 2 1 35 35 H 0.97004 * 119.99869 * 18.65089 * 7 5 4 36 36 H 1.09009 * 109.46951 * 300.00276 * 10 8 7 37 37 H 1.08995 * 109.47281 * 59.99952 * 10 8 7 38 38 H 0.97000 * 120.00058 * 179.97438 * 15 14 12 39 39 H 1.08995 * 110.36470 * 278.17288 * 20 5 4 40 40 H 1.08991 * 110.36865 * 155.84756 * 20 5 4 41 41 H 1.08001 * 126.81520 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 6 2.3519 -2.1695 -0.6923 6 1 1.4452 -2.7737 -0.6602 7 7 3.3937 -2.8313 -1.4814 8 6 3.5366 -4.1701 -1.4210 9 8 2.8024 -4.8271 -0.7137 10 6 4.6087 -4.8509 -2.2324 11 16 4.5455 -6.6358 -1.9391 12 6 5.8660 -7.1639 -2.9793 13 1 6.4272 -6.4385 -3.5496 14 6 6.1850 -8.5118 -3.0656 15 7 5.5013 -9.3958 -2.3700 16 14 7.5846 -9.0717 -4.1689 17 1 8.8495 -8.4313 -3.7273 18 1 7.7209 -10.5481 -4.0849 19 1 7.2954 -8.6809 -5.5721 20 6 2.8568 -1.8498 0.7370 21 7 2.0300 -0.7140 1.1840 22 6 1.7744 -0.3850 2.4657 23 8 1.1126 0.6033 2.7194 24 6 2.2965 -1.2220 3.5587 25 6 2.0156 -1.1089 4.8949 26 7 2.7052 -2.0721 5.5066 27 7 3.3756 -2.7375 4.6353 28 7 3.1695 -2.2730 3.4527 29 1 3.5623 -2.6079 2.6316 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5081 -0.8933 32 1 -0.3632 -1.0277 0.0064 33 1 1.2919 -0.7892 -2.0200 34 1 2.9640 -0.2813 -1.6201 35 1 3.9807 -2.3060 -2.0474 36 1 4.4449 -4.6510 -3.2914 37 1 5.5857 -4.4682 -1.9374 38 1 5.7240 -10.3380 -2.4307 39 1 3.9091 -1.5667 0.7130 40 1 2.7088 -2.7079 1.3924 41 1 1.3634 -0.3846 5.3601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338117682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:02 Heat of formation + Delta-G solvation = 13.272969 kcal Electronic energy + Delta-G solvation = -26597.161884 eV Core-core repulsion = 22640.040185 eV Total energy + Delta-G solvation = -3957.121699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.58357 -41.66183 -40.49846 -38.78016 -35.55221 -35.00431 -34.57236 -33.31121 -32.01906 -31.93444 -29.76920 -27.64628 -27.30430 -25.90034 -24.34847 -23.67080 -22.53583 -21.76141 -21.21949 -19.84212 -19.36101 -18.23364 -18.06020 -17.70991 -17.38933 -16.93555 -16.86268 -16.45568 -16.37471 -15.78064 -15.59141 -15.29622 -14.91395 -14.71778 -14.54817 -14.44899 -14.20668 -13.62584 -13.41286 -13.37872 -13.16415 -13.14621 -12.86276 -12.69623 -12.61490 -12.38664 -12.25958 -11.97228 -11.81023 -11.70846 -11.44333 -11.12078 -10.99696 -10.77536 -10.33928 -10.25311 -9.97366 -8.64628 -8.34052 -6.11210 -0.31900 1.07705 1.16521 1.28343 1.43995 1.45257 1.52230 1.55432 1.62209 1.80934 2.21043 2.29031 2.92565 3.00646 3.18166 3.25597 3.34288 3.52665 3.75748 3.86616 3.91037 3.97617 4.00298 4.07124 4.14636 4.34398 4.37389 4.51485 4.55953 4.60199 4.84607 4.87619 4.89458 5.03719 5.16500 5.33108 5.37775 5.42565 5.42983 5.99046 6.20278 6.46242 6.64732 7.05796 7.08109 7.20188 8.74496 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.002534 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.548884 B =11046.510667 C =12456.004484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 H 0.100 0.900 4 C -0.118 4.118 5 C 0.142 3.858 6 H 0.088 0.912 7 N -0.698 5.698 8 C 0.538 3.462 9 O -0.559 6.559 10 C -0.132 4.132 11 S -0.153 6.153 12 C -0.545 4.545 13 H 0.085 0.915 14 C 0.014 3.986 15 N -0.912 5.912 16 Si 0.995 3.005 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.064 3.936 21 N -0.603 5.603 22 C 0.617 3.383 23 O -0.533 6.533 24 C -0.068 4.068 25 C 0.032 3.968 26 N -0.293 5.293 27 N -0.068 5.068 28 N -0.363 5.363 29 H 0.458 0.542 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.424 0.576 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.270 0.730 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 24.622 1.186 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.118 0.882 4 C -0.156 4.156 5 C 0.035 3.965 6 H 0.106 0.894 7 N -0.353 5.353 8 C 0.325 3.675 9 O -0.436 6.436 10 C -0.283 4.283 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.103 0.897 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.061 4.061 21 N -0.337 5.337 22 C 0.404 3.596 23 O -0.408 6.408 24 C -0.203 4.203 25 C -0.128 4.128 26 N -0.157 5.157 27 N -0.050 5.050 28 N -0.098 5.098 29 H 0.314 0.686 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.263 0.737 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.312 22.917 3.525 24.030 hybrid contribution 1.412 0.403 -2.313 2.740 sum -4.900 23.320 1.212 23.860 Atomic orbital electron populations 1.22188 0.94187 1.02323 1.03652 1.21833 0.95186 0.97136 0.82391 0.88222 1.23074 1.05010 0.90905 0.96598 1.21891 0.91152 0.94949 0.88529 0.89382 1.45557 1.36514 1.05504 1.47769 1.20084 0.83678 0.82768 0.81015 1.90732 1.45865 1.65479 1.41574 1.23392 1.01374 0.99667 1.03870 1.85607 1.46434 0.98754 1.61747 1.23175 1.19280 0.95923 1.30907 0.89737 1.26088 0.99871 0.95741 0.97430 1.70172 1.41134 1.02571 1.40950 0.85055 0.77797 0.77026 0.78466 1.18655 1.20768 1.18618 1.23196 0.97166 0.88090 0.97680 1.48366 1.50206 1.30160 1.04923 1.16250 0.79773 0.83359 0.80267 1.90854 1.40308 1.26772 1.82900 1.22413 1.03155 0.96653 0.98112 1.24369 1.00533 0.98879 0.89022 1.75000 1.08875 1.06653 1.25183 1.78250 1.19092 1.20021 0.87596 1.46492 1.30821 1.21584 1.10896 0.68648 0.92881 0.88762 0.93030 0.86763 0.86425 0.73697 0.86941 0.86760 0.92096 0.87363 0.91791 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.06 71.99 0.65 -1.26 16 2 C 0.14 1.34 3.48 45.34 0.16 1.50 16 3 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -0.65 6.12 31.78 0.19 -0.46 16 5 C 0.14 1.87 3.32 46.39 0.15 2.03 16 6 H 0.09 1.65 7.73 -2.39 -0.02 1.63 16 7 N -0.70 -10.62 5.23 -435.95 -2.28 -12.90 16 8 C 0.54 15.41 7.85 87.66 0.69 16.09 16 9 O -0.56 -21.59 15.61 -3.03 -0.05 -21.64 16 10 C -0.13 -4.36 6.16 71.24 0.44 -3.92 16 11 S -0.15 -7.83 20.57 -56.49 -1.16 -8.99 16 12 C -0.55 -29.40 9.50 67.95 0.65 -28.75 16 13 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 14 C 0.01 0.74 5.49 84.85 0.47 1.21 16 15 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 16 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 C 0.06 0.84 5.25 86.86 0.46 1.30 16 21 N -0.60 -8.59 3.08 -792.11 -2.44 -11.03 16 22 C 0.62 11.86 7.60 86.61 0.66 12.52 16 23 O -0.53 -12.52 15.91 -4.08 -0.06 -12.59 16 24 C -0.07 -1.37 6.93 40.41 0.28 -1.09 16 25 C 0.03 0.67 11.87 84.18 1.00 1.66 16 26 N -0.29 -7.56 12.35 -57.50 -0.71 -8.27 16 27 N -0.07 -1.76 13.35 37.02 0.49 -1.27 16 28 N -0.36 -7.44 6.38 -48.52 -0.31 -7.75 16 29 H 0.46 7.65 5.38 -219.90 -1.18 6.47 16 30 H 0.05 0.87 6.82 -2.39 -0.02 0.85 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.40 7.83 -2.39 -0.02 0.38 16 34 H 0.12 0.07 8.00 -2.39 -0.02 0.06 16 35 H 0.42 3.26 8.52 -92.71 -0.79 2.47 16 36 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.11 3.29 8.14 -2.40 -0.02 3.27 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.09 5.50 -2.39 -0.01 1.08 16 41 H 0.23 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -80.72 361.99 0.71 -80.01 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -0.87 Total: 13.85 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.79 Total: 0.82 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -4.96 Total: -95.41 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.11 Total: -34.23 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.16 Total: -8.99 kcal Total: -80.72 0.71 -80.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338117682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.279 kcal (2) G-P(sol) polarization free energy of solvation -80.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds