Wall clock time and date at job start Tue Mar 31 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 120.00333 * 2 1 4 4 H 1.48505 * 109.46941 * 239.99504 * 3 2 1 5 5 H 1.48500 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47441 * 119.99802 * 3 2 1 7 7 C 1.40033 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.40633 * 119.78613 * 180.02562 * 9 7 2 11 11 C 1.38309 * 119.13362 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67349 * 0.02562 * 11 10 9 13 13 C 1.39667 * 119.49288 * 359.97438 * 12 11 10 14 14 N 1.39118 * 119.57840 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00115 * 185.31498 * 14 13 12 16 16 O 1.21357 * 119.99936 * 354.84579 * 15 14 13 17 17 C 1.49371 * 119.99947 * 174.84941 * 15 14 13 18 18 O 1.21357 * 120.00118 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99553 * 179.97438 * 17 15 14 20 20 C 1.47426 * 125.65184 * 0.02562 * 19 17 15 21 21 C 1.54913 * 104.83076 * 204.09231 * 20 19 17 22 22 C 1.55153 * 101.58036 * 322.99066 * 21 20 19 23 23 C 1.47026 * 125.64410 * 179.97438 * 19 17 15 24 24 H 1.08993 * 109.88438 * 59.55818 * 23 19 17 25 25 C 1.53004 * 109.88192 * 298.39537 * 23 19 17 26 26 F 1.39893 * 109.47317 * 67.19350 * 25 23 19 27 27 F 1.39902 * 109.46876 * 187.19397 * 25 23 19 28 28 N 1.31966 * 120.84582 * 0.28260 * 13 12 11 29 29 H 0.97003 * 120.00030 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.43437 * 0.03855 * 10 9 7 31 31 H 1.07999 * 120.66383 * 180.02562 * 11 10 9 32 32 H 1.07995 * 120.25575 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99881 * 5.31364 * 14 13 12 34 34 H 1.08996 * 110.36388 * 85.25390 * 20 19 17 35 35 H 1.08998 * 110.36754 * 322.93145 * 20 19 17 36 36 H 1.08998 * 111.00152 * 204.91632 * 21 20 19 37 37 H 1.08996 * 111.00116 * 81.06609 * 21 20 19 38 38 H 1.09004 * 110.72022 * 153.86782 * 22 21 20 39 39 H 1.09003 * 110.72451 * 277.13536 * 22 21 20 40 40 H 1.09003 * 109.46751 * 307.19000 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6962 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0951 1.6964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3007 -2.4367 0.0005 10 6 2.0084 -3.6520 0.0016 11 6 1.3032 -4.8418 0.0011 12 6 -0.0829 -4.7939 -0.0011 13 6 -0.7280 -3.5551 -0.0021 14 7 -2.1183 -3.5050 -0.0037 15 6 -2.7497 -2.3193 -0.1128 16 8 -2.1090 -1.2886 -0.1154 17 6 -4.2381 -2.2738 -0.2304 18 8 -4.8788 -3.3044 -0.2282 19 7 -4.8695 -1.0880 -0.3390 20 6 -4.2177 0.2343 -0.3556 21 6 -5.3110 1.2213 0.1242 22 6 -6.5824 0.6206 -0.5315 23 6 -6.3224 -0.8990 -0.4616 24 1 -6.8259 -1.3216 0.4078 25 6 -6.8289 -1.5729 -1.7385 26 9 -6.6934 -2.9601 -1.6188 27 9 -8.1764 -1.2510 -1.9326 28 7 -0.0357 -2.4317 -0.0066 29 1 -0.4850 0.8401 -0.0004 30 1 3.0884 -3.6562 0.0031 31 1 1.8215 -5.7893 0.0023 32 1 -0.6590 -5.7073 -0.0020 33 1 -2.6333 -4.3234 0.0736 34 1 -3.8962 0.4860 -1.3662 35 1 -3.3686 0.2472 0.3278 36 1 -5.1185 2.2280 -0.2469 37 1 -5.3922 1.2162 1.2111 38 1 -7.4726 0.8862 0.0388 39 1 -6.6743 0.9488 -1.5668 40 1 -6.2453 -1.2229 -2.5900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338787330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:23 Heat of formation + Delta-G solvation = -97.320063 kcal Electronic energy + Delta-G solvation = -30160.241924 eV Core-core repulsion = 25612.191414 eV Total energy + Delta-G solvation = -4548.050510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.96271 -46.92940 -40.52930 -38.99986 -37.67835 -37.15476 -34.36061 -33.15361 -31.72373 -30.66689 -30.40688 -29.24654 -25.96389 -25.53438 -24.76066 -22.61519 -21.79059 -21.35194 -20.54603 -19.32857 -18.12919 -17.83019 -17.19135 -17.04878 -16.59662 -16.33156 -16.10718 -15.10471 -15.06709 -14.75805 -14.51460 -13.93255 -13.84982 -13.74567 -13.62629 -13.52209 -13.33016 -13.17635 -12.94452 -12.82111 -12.61318 -12.07904 -12.03655 -11.85569 -11.51023 -11.27482 -11.21882 -11.05475 -10.90127 -10.77615 -10.73540 -10.55112 -10.03128 -9.83791 -9.12911 -8.97413 -8.83589 -8.06839 -7.36818 -7.09846 -6.26540 -4.48937 1.83332 2.41191 2.78376 3.04357 3.08504 3.12110 3.20800 3.55834 3.77867 3.90806 3.97991 4.06421 4.12138 4.33246 4.64738 4.76817 4.82588 4.88456 4.94799 5.08071 5.30208 5.45653 5.64432 5.65483 5.87389 5.93110 6.00543 6.03584 6.17779 6.39886 6.54408 6.72029 6.76266 7.12042 7.18396 7.40238 7.48718 7.72933 7.77075 7.97667 8.10586 8.32605 8.58403 8.88486 8.97513 10.10092 10.36925 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.004011 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.375644 B = 6979.541488 C = 8870.192439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.664 5.664 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.272 3.728 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.368 3.632 14 N -0.637 5.637 15 C 0.472 3.528 16 O -0.381 6.381 17 C 0.516 3.484 18 O -0.509 6.509 19 N -0.594 5.594 20 C 0.096 3.904 21 C -0.134 4.134 22 C -0.123 4.123 23 C 0.090 3.910 24 H 0.099 0.901 25 C 0.251 3.749 26 F -0.182 7.182 27 F -0.204 7.204 28 N -0.474 5.474 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 4.290 -1.249 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.283 5.283 2 C -0.167 4.167 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.147 3.853 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.373 4.373 13 C 0.131 3.869 14 N -0.286 5.286 15 C 0.248 3.752 16 O -0.244 6.244 17 C 0.300 3.700 18 O -0.383 6.383 19 N -0.330 5.330 20 C -0.026 4.026 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.015 4.015 24 H 0.117 0.883 25 C 0.196 3.804 26 F -0.163 7.163 27 F -0.186 7.186 28 N -0.193 5.193 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.028 5.400 -1.269 14.160 hybrid contribution 0.351 -0.746 -0.042 0.826 sum -12.676 4.654 -1.310 13.567 Atomic orbital electron populations 1.70304 1.05920 1.27308 1.24740 1.26136 0.95128 1.00587 0.94878 0.86553 0.80249 0.81245 0.79740 1.19173 1.20351 1.19161 1.19553 0.94114 0.89324 1.42489 0.89916 1.18351 0.86959 0.92018 0.87958 1.21664 0.98695 0.93482 1.18461 1.20587 0.93057 0.96698 0.95657 1.20517 0.94837 0.94966 1.27020 1.18524 0.82521 0.91275 0.94627 1.42973 1.05329 1.09012 1.71247 1.19918 0.86812 0.86122 0.82332 1.91156 1.64322 1.30363 1.38569 1.20772 0.89750 0.82373 0.77124 1.90797 1.67785 1.32137 1.47581 1.48261 1.05528 1.07155 1.72099 1.22794 0.96679 0.79398 1.03702 1.22885 0.93542 0.99349 1.01421 1.22640 0.99778 0.90784 1.02920 1.22640 0.83481 0.97951 0.97444 0.88270 1.22315 0.79336 0.78500 1.00229 1.93122 1.95402 1.30630 1.97160 1.92970 1.36682 1.92604 1.96326 1.68634 1.07261 1.23077 1.20359 0.91731 0.88369 0.88348 0.88702 0.75257 0.90640 0.86614 0.89136 0.90220 0.89003 0.89822 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -16.75 8.99 55.55 0.50 -16.25 16 2 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 3 Si 0.90 18.04 29.56 -169.99 -5.02 13.02 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.42 -11.10 9.14 -37.73 -0.34 -11.45 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.27 7.33 6.55 -84.99 -0.56 6.78 16 10 C -0.30 -7.30 9.83 -38.65 -0.38 -7.68 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.35 -7.73 9.95 -38.88 -0.39 -8.12 16 13 C 0.37 8.83 7.42 -155.08 -1.15 7.67 16 14 N -0.64 -13.07 5.37 -11.83 -0.06 -13.13 16 15 C 0.47 9.50 7.81 -11.62 -0.09 9.40 16 16 O -0.38 -8.52 9.54 5.49 0.05 -8.46 16 17 C 0.52 8.91 7.68 -11.62 -0.09 8.82 16 18 O -0.51 -9.44 14.05 5.49 0.08 -9.37 16 19 N -0.59 -8.29 3.07 -163.55 -0.50 -8.79 16 20 C 0.10 1.19 6.06 -2.53 -0.02 1.18 16 21 C -0.13 -1.14 7.09 -24.58 -0.17 -1.32 16 22 C -0.12 -0.97 6.13 -24.90 -0.15 -1.12 16 23 C 0.09 1.01 3.15 -66.95 -0.21 0.80 16 24 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 25 C 0.25 3.00 4.77 37.16 0.18 3.17 16 26 F -0.18 -2.87 14.37 2.25 0.03 -2.84 16 27 F -0.20 -2.36 16.95 2.25 0.04 -2.32 16 28 N -0.47 -12.69 5.73 -10.27 -0.06 -12.75 16 29 H 0.27 6.25 8.29 -40.82 -0.34 5.92 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.41 7.33 8.18 -40.82 -0.33 7.00 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.12 1.76 6.16 -51.93 -0.32 1.44 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 40 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -30.93 341.51 -8.09 -39.02 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.41 Total: 8.36 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -3.87 Total: 8.37 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.12 Total: -50.92 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.13 Total: -17.83 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.16 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.93 -8.09 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338787330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.302 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds