Wall clock time and date at job start Tue Mar 31 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 120.00333 * 2 1 4 4 H 1.48505 * 109.46941 * 239.99504 * 3 2 1 5 5 H 1.48500 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47441 * 119.99802 * 3 2 1 7 7 C 1.40033 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.40633 * 119.78613 * 180.02562 * 9 7 2 11 11 C 1.38309 * 119.13362 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67349 * 0.02562 * 11 10 9 13 13 C 1.39667 * 119.49288 * 359.97438 * 12 11 10 14 14 N 1.39118 * 119.57840 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00115 * 185.31498 * 14 13 12 16 16 O 1.21357 * 119.99936 * 354.84579 * 15 14 13 17 17 C 1.49371 * 119.99947 * 174.84941 * 15 14 13 18 18 O 1.21357 * 120.00118 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99553 * 179.97438 * 17 15 14 20 20 C 1.47426 * 125.65184 * 0.02562 * 19 17 15 21 21 C 1.54913 * 104.83076 * 204.09231 * 20 19 17 22 22 C 1.55153 * 101.58036 * 322.99066 * 21 20 19 23 23 C 1.47026 * 125.64410 * 179.97438 * 19 17 15 24 24 H 1.08993 * 109.88438 * 59.55818 * 23 19 17 25 25 C 1.53004 * 109.88192 * 298.39537 * 23 19 17 26 26 F 1.39893 * 109.47317 * 67.19350 * 25 23 19 27 27 F 1.39902 * 109.46876 * 187.19397 * 25 23 19 28 28 N 1.31966 * 120.84582 * 0.28260 * 13 12 11 29 29 H 0.97003 * 120.00030 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.43437 * 0.03855 * 10 9 7 31 31 H 1.07999 * 120.66383 * 180.02562 * 11 10 9 32 32 H 1.07995 * 120.25575 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99881 * 5.31364 * 14 13 12 34 34 H 1.08996 * 110.36388 * 85.25390 * 20 19 17 35 35 H 1.08998 * 110.36754 * 322.93145 * 20 19 17 36 36 H 1.08998 * 111.00152 * 204.91632 * 21 20 19 37 37 H 1.08996 * 111.00116 * 81.06609 * 21 20 19 38 38 H 1.09004 * 110.72022 * 153.86782 * 22 21 20 39 39 H 1.09003 * 110.72451 * 277.13536 * 22 21 20 40 40 H 1.09003 * 109.46751 * 307.19000 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6962 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0951 1.6964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3007 -2.4367 0.0005 10 6 2.0084 -3.6520 0.0016 11 6 1.3032 -4.8418 0.0011 12 6 -0.0829 -4.7939 -0.0011 13 6 -0.7280 -3.5551 -0.0021 14 7 -2.1183 -3.5050 -0.0037 15 6 -2.7497 -2.3193 -0.1128 16 8 -2.1090 -1.2886 -0.1154 17 6 -4.2381 -2.2738 -0.2304 18 8 -4.8788 -3.3044 -0.2282 19 7 -4.8695 -1.0880 -0.3390 20 6 -4.2177 0.2343 -0.3556 21 6 -5.3110 1.2213 0.1242 22 6 -6.5824 0.6206 -0.5315 23 6 -6.3224 -0.8990 -0.4616 24 1 -6.8259 -1.3216 0.4078 25 6 -6.8289 -1.5729 -1.7385 26 9 -6.6934 -2.9601 -1.6188 27 9 -8.1764 -1.2510 -1.9326 28 7 -0.0357 -2.4317 -0.0066 29 1 -0.4850 0.8401 -0.0004 30 1 3.0884 -3.6562 0.0031 31 1 1.8215 -5.7893 0.0023 32 1 -0.6590 -5.7073 -0.0020 33 1 -2.6333 -4.3234 0.0736 34 1 -3.8962 0.4860 -1.3662 35 1 -3.3686 0.2472 0.3278 36 1 -5.1185 2.2280 -0.2469 37 1 -5.3922 1.2162 1.2111 38 1 -7.4726 0.8862 0.0388 39 1 -6.6743 0.9488 -1.5668 40 1 -6.2453 -1.2229 -2.5900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338787330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:22 Heat of formation + Delta-G solvation = -115.685890 kcal Electronic energy + Delta-G solvation = -30161.038326 eV Core-core repulsion = 25612.191414 eV Total energy + Delta-G solvation = -4548.846912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95536 -47.95769 -41.89863 -40.52625 -39.14452 -38.58314 -36.08093 -34.92103 -32.77206 -32.26228 -31.57996 -31.05701 -27.68638 -26.71351 -26.05135 -24.00648 -23.32188 -22.59098 -21.85955 -20.75165 -19.71910 -18.86112 -18.65634 -18.10409 -18.01369 -17.78294 -17.32622 -16.50996 -16.40145 -16.29985 -16.19460 -15.61182 -15.20862 -15.06898 -14.87144 -14.65822 -14.48658 -14.30953 -14.21712 -13.99760 -13.81977 -13.74305 -13.49831 -12.85902 -12.78830 -12.73937 -12.61660 -12.57149 -12.30394 -12.07808 -11.95359 -11.76450 -11.68936 -11.57407 -10.90319 -10.50783 -10.01021 -9.92291 -9.18311 -8.91716 -8.07261 -6.41264 0.33376 1.02690 1.13762 1.26769 1.45171 1.54781 1.57873 2.29528 2.30076 2.37836 2.75881 2.99328 3.16888 3.18895 3.42189 3.47215 3.79313 3.97762 4.01999 4.12047 4.24393 4.32540 4.46827 4.66102 4.76803 4.80596 4.83046 4.89275 4.94184 4.98388 5.07320 5.13365 5.25191 5.31517 5.63420 5.71661 5.90046 5.95457 6.09848 6.25760 6.45704 6.65679 6.80450 7.04917 7.27427 8.24662 8.57498 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.004011 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.375644 B = 6979.541488 C = 8870.192439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.017 3.983 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.086 0.914 9 C 0.238 3.762 10 C -0.323 4.323 11 C -0.033 4.033 12 C -0.345 4.345 13 C 0.349 3.651 14 N -0.634 5.634 15 C 0.463 3.537 16 O -0.405 6.405 17 C 0.521 3.479 18 O -0.526 6.526 19 N -0.586 5.586 20 C 0.091 3.909 21 C -0.120 4.120 22 C -0.111 4.111 23 C 0.086 3.914 24 H 0.097 0.903 25 C 0.248 3.752 26 F -0.207 7.207 27 F -0.199 7.199 28 N -0.502 5.502 29 H 0.276 0.724 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.423 0.577 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 5.476 -1.489 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.209 4.209 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.346 4.346 11 C -0.057 4.057 12 C -0.371 4.371 13 C 0.111 3.889 14 N -0.284 5.284 15 C 0.241 3.759 16 O -0.269 6.269 17 C 0.304 3.696 18 O -0.402 6.402 19 N -0.321 5.321 20 C -0.030 4.030 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.018 4.018 24 H 0.115 0.885 25 C 0.193 3.807 26 F -0.188 7.188 27 F -0.181 7.181 28 N -0.222 5.222 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.260 0.740 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.323 6.584 -1.510 15.836 hybrid contribution 0.677 -1.205 0.032 1.382 sum -13.646 5.379 -1.478 14.742 Atomic orbital electron populations 1.70431 1.07220 1.28435 1.24806 1.26924 0.96072 1.03654 0.94242 0.85395 0.78815 0.76713 0.79535 1.18965 1.19090 1.18966 1.19888 0.94525 0.90406 1.44364 0.89634 1.18834 0.87663 0.93405 0.88790 1.21857 0.99383 0.93741 1.19601 1.21021 0.93209 0.97590 0.93875 1.20934 0.95355 0.95552 1.25238 1.18960 0.83845 0.91582 0.94504 1.42980 1.04331 1.09949 1.71108 1.20503 0.88315 0.85629 0.81493 1.91161 1.65440 1.31025 1.39245 1.20098 0.88245 0.83381 0.77852 1.90790 1.67530 1.32877 1.48992 1.48278 1.07104 1.06588 1.70169 1.22848 0.97309 0.79711 1.03146 1.22855 0.92011 0.99267 1.01682 1.22721 1.00167 0.87484 1.04480 1.22908 0.81181 1.00592 0.97147 0.88505 1.22534 0.79759 0.77146 1.01214 1.93074 1.95575 1.32871 1.97316 1.92977 1.36372 1.92400 1.96332 1.68600 1.07518 1.24656 1.21468 0.91313 0.87432 0.84484 0.85571 0.73956 0.90576 0.89757 0.86653 0.89980 0.86493 0.88037 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -35.88 8.99 21.84 0.20 -35.69 16 2 C 0.02 0.86 5.50 85.29 0.47 1.33 16 3 Si 0.97 37.56 29.56 68.60 2.03 39.59 16 4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 6 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.46 -24.98 9.14 23.47 0.21 -24.76 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.24 13.27 6.55 40.21 0.26 13.53 16 10 C -0.32 -15.92 9.83 22.87 0.22 -15.70 16 11 C -0.03 -1.42 10.15 22.40 0.23 -1.20 16 12 C -0.35 -15.08 9.95 22.72 0.23 -14.85 16 13 C 0.35 17.00 7.42 133.28 0.99 17.99 16 14 N -0.63 -26.51 5.37 -309.71 -1.66 -28.17 16 15 C 0.46 19.20 7.81 87.24 0.68 19.88 16 16 O -0.40 -18.80 9.54 -3.27 -0.03 -18.83 16 17 C 0.52 18.20 7.68 87.24 0.67 18.87 16 18 O -0.53 -19.61 14.05 -3.27 -0.05 -19.66 16 19 N -0.59 -16.04 3.07 -789.70 -2.42 -18.46 16 20 C 0.09 2.21 6.06 86.86 0.53 2.74 16 21 C -0.12 -1.72 7.09 31.99 0.23 -1.50 16 22 C -0.11 -1.35 6.13 31.78 0.19 -1.15 16 23 C 0.09 1.78 3.15 45.34 0.14 1.92 16 24 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 25 C 0.25 5.49 4.77 71.98 0.34 5.84 16 26 F -0.21 -6.42 14.37 44.97 0.65 -5.78 16 27 F -0.20 -4.14 16.95 44.97 0.76 -3.38 16 28 N -0.50 -27.79 5.73 -186.42 -1.07 -28.86 16 29 H 0.28 13.07 8.29 -92.71 -0.77 12.30 16 30 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.42 15.17 8.18 -92.71 -0.76 14.41 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.65 6.16 -2.39 -0.01 2.64 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.94 7.85 -2.39 -0.02 0.93 16 40 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.79 341.51 4.15 -65.64 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.35 Total: 30.67 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 5.40 Total: 22.94 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.96 Total: -111.18 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.08 Total: -38.49 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 1.41 Total: -9.15 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -69.79 4.15 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338787330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.049 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds