Wall clock time and date at job start Tue Mar 31 2020 22:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40060 * 125.97506 * 179.70134 * 13 12 11 15 15 C 1.34779 * 120.00382 * 0.02562 * 14 13 12 16 16 O 1.21550 * 119.99511 * 359.97438 * 15 14 13 17 17 C 1.47947 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.39949 * 120.11132 * 179.97438 * 17 15 14 19 19 C 1.38471 * 117.96487 * 179.97438 * 18 17 15 20 20 C 1.39353 * 118.03318 * 359.97438 * 19 18 17 21 21 N 1.39530 * 120.02853 * 179.97438 * 20 19 18 22 22 C 1.37220 * 126.49261 * 184.71594 * 21 20 19 23 23 C 1.34603 * 106.82082 * 179.84221 * 22 21 20 24 24 N 1.34171 * 108.23361 * 0.42515 * 23 22 21 25 25 C 1.30459 * 109.38337 * 359.73089 * 24 23 22 26 26 N 1.32686 * 119.94208 * 0.02562 * 20 19 18 27 27 N 1.28354 * 122.19892 * 359.72873 * 26 20 19 28 28 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08002 * 126.06186 * 359.96239 * 11 10 9 33 33 H 1.07997 * 126.06718 * 180.13691 * 12 11 10 34 34 H 0.97003 * 119.99929 * 180.02562 * 14 13 12 35 35 H 1.07998 * 121.01400 * 359.95673 * 18 17 15 36 36 H 1.07999 * 120.98202 * 180.02562 * 19 18 17 37 37 H 1.07996 * 126.59162 * 359.97438 * 22 21 20 38 38 H 1.08004 * 125.88126 * 180.11279 * 23 22 21 39 39 H 1.08004 * 125.72744 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9600 -5.4617 -1.3034 15 6 5.5263 -6.6027 -0.8629 16 8 5.0884 -7.1555 0.1271 17 6 6.6806 -7.1822 -1.5843 18 6 7.2707 -8.3665 -1.1286 19 6 8.3482 -8.8699 -1.8378 20 6 8.7785 -8.1670 -2.9616 21 7 9.8608 -8.6364 -3.7066 22 6 10.4496 -8.0085 -4.7752 23 6 11.4532 -8.8039 -5.1899 24 7 11.4762 -9.8934 -4.4071 25 6 10.5282 -9.8057 -3.5151 26 7 8.1587 -7.0505 -3.3218 27 7 7.1568 -6.5834 -2.6696 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7502 1.7306 33 1 3.5579 -6.3464 1.0450 34 1 5.3096 -5.0203 -2.0932 35 1 6.8972 -8.8723 -0.2505 36 1 8.8400 -9.7807 -1.5297 37 1 10.1643 -7.0576 -5.2004 38 1 12.1213 -8.6025 -6.0143 39 1 10.3098 -10.5390 -2.7528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339211948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:25 Heat of formation + Delta-G solvation = 190.081768 kcal Electronic energy + Delta-G solvation = -26583.597897 eV Core-core repulsion = 22530.992003 eV Total energy + Delta-G solvation = -4052.605894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.07109 -41.70035 -40.79623 -39.36069 -35.58333 -35.13991 -33.99332 -33.76063 -31.79285 -30.77646 -30.13679 -29.51735 -26.89068 -25.95058 -25.44039 -23.42963 -22.56135 -21.96892 -21.63300 -20.76647 -19.98321 -19.56095 -18.25506 -18.04171 -17.25212 -16.74115 -16.63534 -15.74544 -15.64952 -15.56039 -15.11014 -14.77586 -14.59886 -14.45852 -14.32121 -14.07923 -13.81677 -13.77587 -13.32655 -12.64327 -12.57157 -12.36366 -11.93226 -11.85401 -11.22631 -11.11815 -10.87760 -10.86288 -10.64073 -10.56141 -10.38004 -10.18227 -9.94286 -9.86690 -9.19353 -9.06234 -8.61770 -8.34524 -7.67049 -6.61896 -4.36332 -0.52619 -0.06409 1.31830 1.58366 2.08570 2.33264 2.51022 2.65017 2.96261 3.11117 3.36020 3.38061 3.43233 3.51057 3.54779 3.57387 3.71104 3.88801 4.06453 4.19901 4.33002 4.38456 4.65750 4.84993 4.91742 5.08788 5.11545 5.16259 5.32512 5.50402 5.59204 5.98042 6.04616 6.24593 6.32905 6.38813 6.48433 6.67928 7.12711 7.26004 7.29895 7.59603 7.71304 7.73220 7.85427 8.29046 8.41651 8.56691 9.31766 10.75826 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.001932 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.147241 B =14488.660177 C =15624.443842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.313 5.313 11 C 0.053 3.947 12 C -0.284 4.284 13 C 0.253 3.747 14 N -0.605 5.605 15 C 0.584 3.416 16 O -0.502 6.502 17 C 0.023 3.977 18 C -0.028 4.028 19 C -0.134 4.134 20 C 0.307 3.693 21 N -0.412 5.412 22 C -0.023 4.023 23 C -0.024 4.024 24 N -0.471 5.471 25 C 0.196 3.804 26 N -0.246 5.246 27 N -0.171 5.171 28 N -0.292 5.292 29 H 0.267 0.733 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.423 0.577 35 H 0.179 0.821 36 H 0.168 0.832 37 H 0.189 0.811 38 H 0.181 0.819 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.196 -20.942 -4.058 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.181 4.181 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.095 5.095 11 C -0.097 4.097 12 C -0.315 4.315 13 C 0.000 4.000 14 N -0.252 5.252 15 C 0.366 3.634 16 O -0.374 6.374 17 C -0.125 4.125 18 C -0.057 4.057 19 C -0.164 4.164 20 C 0.073 3.927 21 N -0.096 5.096 22 C -0.151 4.151 23 C -0.168 4.168 24 N -0.188 5.188 25 C -0.086 4.086 26 N -0.093 5.093 27 N -0.018 5.018 28 N -0.123 5.123 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.187 0.813 33 H 0.180 0.820 34 H 0.260 0.740 35 H 0.197 0.803 36 H 0.186 0.814 37 H 0.206 0.794 38 H 0.198 0.802 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 17.923 -17.970 -5.303 25.928 hybrid contribution -0.037 -2.564 1.143 2.807 sum 17.885 -20.534 -4.160 27.547 Atomic orbital electron populations 1.70858 1.06770 1.30427 1.45815 1.25927 0.96304 1.02825 0.93070 0.83421 0.74823 0.74537 0.76892 1.20501 1.21227 1.21071 1.22092 0.95399 0.90380 1.56883 0.91789 1.19814 0.86269 0.82766 0.98151 1.48867 1.23127 1.19475 1.17985 1.22584 1.00389 0.90015 0.96699 1.21514 1.02254 1.06326 1.01396 1.19010 0.91511 0.94605 0.94862 1.42138 1.29098 1.23789 1.30141 1.17183 0.81713 0.80607 0.83891 1.90778 1.61605 1.60395 1.24587 1.22759 0.98417 0.95625 0.95725 1.22381 0.91444 0.92793 0.99111 1.21977 0.98181 1.02286 0.93982 1.20077 0.88841 0.93310 0.90520 1.43002 1.23312 1.18344 1.24948 1.23126 0.98117 1.02048 0.91814 1.22502 1.00250 0.91713 1.02287 1.70371 1.19101 1.23687 1.05611 1.25505 0.92230 0.88602 1.02255 1.73165 1.03710 1.08859 1.23566 1.73324 1.02585 1.23012 1.02908 1.77414 1.03223 1.15829 1.15831 0.92277 0.93466 0.94589 0.81257 0.82028 0.73972 0.80349 0.81422 0.79432 0.80175 0.76798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 13.65 55.43 0.76 -25.22 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.70 29.90 -169.99 -5.08 19.62 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -16.88 9.24 -34.44 -0.32 -17.20 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.13 5.57 -5.19 -0.03 6.10 16 10 N -0.31 -7.08 3.67 -62.56 -0.23 -7.31 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.25 9.60 -39.83 -0.38 -5.63 16 13 C 0.25 4.90 8.11 -154.46 -1.25 3.64 16 14 N -0.61 -9.30 5.44 -11.96 -0.07 -9.37 16 15 C 0.58 7.79 7.78 -12.28 -0.10 7.69 16 16 O -0.50 -7.43 13.51 5.32 0.07 -7.36 16 17 C 0.02 0.23 6.83 -82.84 -0.57 -0.33 16 18 C -0.03 -0.19 9.72 -38.86 -0.38 -0.56 16 19 C -0.13 -0.68 9.58 -39.08 -0.37 -1.05 16 20 C 0.31 2.41 7.58 -154.18 -1.17 1.24 16 21 N -0.41 -3.06 2.98 -63.68 -0.19 -3.25 16 22 C -0.02 -0.17 11.19 -16.43 -0.18 -0.36 16 23 C -0.02 -0.18 11.85 -17.82 -0.21 -0.39 16 24 N -0.47 -4.09 11.24 -14.45 -0.16 -4.26 16 25 C 0.20 1.24 11.91 -89.54 -1.07 0.17 16 26 N -0.25 -2.53 11.07 31.34 0.35 -2.19 16 27 N -0.17 -1.91 10.73 33.32 0.36 -1.55 16 28 N -0.29 -6.62 12.42 31.43 0.39 -6.23 16 29 H 0.27 7.49 7.22 -40.82 -0.29 7.19 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 32 H 0.17 2.56 8.06 -52.49 -0.42 2.14 16 33 H 0.16 2.78 5.91 -52.49 -0.31 2.47 16 34 H 0.42 5.90 8.17 -40.82 -0.33 5.57 16 35 H 0.18 0.82 7.71 -52.49 -0.40 0.42 16 36 H 0.17 0.15 6.86 -52.49 -0.36 -0.21 16 37 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.18 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.22 0.41 7.11 -52.48 -0.37 0.03 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -35.24 352.69 -8.19 -43.42 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.38 Total: 3.69 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -6.32 Total: -5.32 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 1.21 Total: -59.36 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.07 Total: -7.36 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.24 -8.19 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339211948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.506 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds