Wall clock time and date at job start Tue Mar 31 2020 22:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40060 * 125.97506 * 179.70134 * 13 12 11 15 15 C 1.34779 * 120.00382 * 0.02562 * 14 13 12 16 16 O 1.21550 * 119.99511 * 359.97438 * 15 14 13 17 17 C 1.47947 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.39949 * 120.11132 * 179.97438 * 17 15 14 19 19 C 1.38471 * 117.96487 * 179.97438 * 18 17 15 20 20 C 1.39353 * 118.03318 * 359.97438 * 19 18 17 21 21 N 1.39530 * 120.02853 * 179.97438 * 20 19 18 22 22 C 1.37220 * 126.49261 * 184.71594 * 21 20 19 23 23 C 1.34603 * 106.82082 * 179.84221 * 22 21 20 24 24 N 1.34171 * 108.23361 * 0.42515 * 23 22 21 25 25 C 1.30459 * 109.38337 * 359.73089 * 24 23 22 26 26 N 1.32686 * 119.94208 * 0.02562 * 20 19 18 27 27 N 1.28354 * 122.19892 * 359.72873 * 26 20 19 28 28 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08002 * 126.06186 * 359.96239 * 11 10 9 33 33 H 1.07997 * 126.06718 * 180.13691 * 12 11 10 34 34 H 0.97003 * 119.99929 * 180.02562 * 14 13 12 35 35 H 1.07998 * 121.01400 * 359.95673 * 18 17 15 36 36 H 1.07999 * 120.98202 * 180.02562 * 19 18 17 37 37 H 1.07996 * 126.59162 * 359.97438 * 22 21 20 38 38 H 1.08004 * 125.88126 * 180.11279 * 23 22 21 39 39 H 1.08004 * 125.72744 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9600 -5.4617 -1.3034 15 6 5.5263 -6.6027 -0.8629 16 8 5.0884 -7.1555 0.1271 17 6 6.6806 -7.1822 -1.5843 18 6 7.2707 -8.3665 -1.1286 19 6 8.3482 -8.8699 -1.8378 20 6 8.7785 -8.1670 -2.9616 21 7 9.8608 -8.6364 -3.7066 22 6 10.4496 -8.0085 -4.7752 23 6 11.4532 -8.8039 -5.1899 24 7 11.4762 -9.8934 -4.4071 25 6 10.5282 -9.8057 -3.5151 26 7 8.1587 -7.0505 -3.3218 27 7 7.1568 -6.5834 -2.6696 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7502 1.7306 33 1 3.5579 -6.3464 1.0450 34 1 5.3096 -5.0203 -2.0932 35 1 6.8972 -8.8723 -0.2505 36 1 8.8400 -9.7807 -1.5297 37 1 10.1643 -7.0576 -5.2004 38 1 12.1213 -8.6025 -6.0143 39 1 10.3098 -10.5390 -2.7528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339211948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:25 Heat of formation + Delta-G solvation = 167.987044 kcal Electronic energy + Delta-G solvation = -26584.555996 eV Core-core repulsion = 22530.992003 eV Total energy + Delta-G solvation = -4053.563993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61200 -42.56049 -42.07681 -40.52346 -36.59835 -36.17435 -35.58297 -34.61245 -32.96948 -31.99204 -31.07428 -30.65868 -28.40952 -27.03808 -26.06424 -25.13560 -23.69648 -22.61951 -22.43599 -22.09683 -21.24437 -20.10761 -19.34369 -19.17973 -18.80059 -18.02293 -17.40545 -16.95853 -16.69881 -16.30248 -16.10716 -15.96265 -15.64395 -15.38661 -15.13891 -15.08503 -14.94688 -14.90219 -14.26412 -14.19138 -13.95829 -13.77877 -13.35841 -13.19996 -12.63927 -12.50753 -12.13290 -11.96520 -11.78005 -11.66191 -11.44514 -11.27602 -11.14678 -11.03066 -10.70242 -10.48367 -9.90141 -9.71402 -9.27924 -8.78834 -6.56505 -1.17254 -0.59648 0.60609 0.99272 1.01047 1.14674 1.38745 1.50648 1.56690 1.78164 1.95604 2.02584 2.03852 2.35898 2.46914 2.51518 2.90413 3.00446 3.07944 3.31883 3.51765 3.66668 3.77759 3.85025 4.11219 4.18933 4.36693 4.45525 4.52908 4.59661 4.64592 4.70017 4.76331 4.78414 4.94164 5.02060 5.53196 5.53527 5.72691 5.89435 5.90781 5.99473 6.25270 6.40330 6.63925 6.78923 6.89453 7.08251 7.18599 8.58022 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.001932 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.147241 B =14488.660177 C =15624.443842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.118 2.882 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.622 4.622 8 H 0.044 0.956 9 C 0.258 3.742 10 N -0.340 5.340 11 C 0.058 3.942 12 C -0.285 4.285 13 C 0.263 3.737 14 N -0.610 5.610 15 C 0.591 3.409 16 O -0.514 6.514 17 C 0.009 3.991 18 C -0.019 4.019 19 C -0.107 4.107 20 C 0.303 3.697 21 N -0.417 5.417 22 C -0.043 4.043 23 C -0.030 4.030 24 N -0.508 5.508 25 C 0.209 3.791 26 N -0.274 5.274 27 N -0.196 5.196 28 N -0.344 5.344 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.206 0.794 33 H 0.179 0.821 34 H 0.427 0.573 35 H 0.204 0.796 36 H 0.221 0.779 37 H 0.190 0.810 38 H 0.195 0.805 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.951 -23.308 -2.857 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.660 4.660 8 H 0.063 0.937 9 C 0.139 3.861 10 N -0.122 5.122 11 C -0.090 4.090 12 C -0.316 4.316 13 C 0.008 3.992 14 N -0.258 5.258 15 C 0.375 3.625 16 O -0.387 6.387 17 C -0.140 4.140 18 C -0.048 4.048 19 C -0.137 4.137 20 C 0.069 3.931 21 N -0.102 5.102 22 C -0.170 4.170 23 C -0.172 4.172 24 N -0.224 5.224 25 C -0.072 4.072 26 N -0.122 5.122 27 N -0.043 5.043 28 N -0.175 5.175 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.223 0.777 33 H 0.196 0.804 34 H 0.265 0.735 35 H 0.221 0.779 36 H 0.237 0.763 37 H 0.207 0.793 38 H 0.212 0.788 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 19.707 -20.376 -4.119 28.645 hybrid contribution -0.435 -2.051 0.731 2.221 sum 19.272 -22.427 -3.388 29.763 Atomic orbital electron populations 1.70948 1.07399 1.30209 1.47269 1.27234 0.96459 1.06009 0.92123 0.82894 0.74161 0.71247 0.77767 1.19962 1.19571 1.20275 1.22283 0.94666 0.92178 1.56888 0.93719 1.19457 0.86385 0.82707 0.97564 1.48616 1.23799 1.20225 1.19574 1.23263 1.00591 0.88525 0.96607 1.21775 1.01970 1.06694 1.01113 1.19365 0.91510 0.93489 0.94804 1.42329 1.28476 1.24651 1.30361 1.17609 0.81870 0.79468 0.83588 1.90743 1.62236 1.60507 1.25203 1.22443 0.98093 0.97244 0.96198 1.22670 0.91242 0.91205 0.99658 1.22490 0.96707 1.02861 0.91644 1.20344 0.88591 0.92948 0.91246 1.43128 1.23337 1.18789 1.24966 1.23278 0.98657 1.02567 0.92537 1.22819 1.00374 0.91490 1.02557 1.70389 1.20675 1.24428 1.06940 1.26436 0.90606 0.88286 1.01895 1.73055 1.04156 1.10633 1.24310 1.73251 1.03384 1.24060 1.03609 1.77320 1.04676 1.18094 1.17392 0.92907 0.92435 0.96490 0.77683 0.80356 0.73528 0.77856 0.76273 0.79300 0.78766 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 13.65 21.45 0.29 -53.35 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.56 16 3 Si 1.12 49.79 29.90 68.60 2.05 51.84 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.62 -35.25 9.24 25.60 0.24 -35.02 16 8 H 0.04 2.66 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.10 5.57 85.64 0.48 13.57 16 10 N -0.34 -15.65 3.67 -351.84 -1.29 -16.94 16 11 C 0.06 2.16 11.43 83.52 0.95 3.12 16 12 C -0.28 -10.28 9.60 22.11 0.21 -10.07 16 13 C 0.26 10.24 8.11 133.36 1.08 11.32 16 14 N -0.61 -18.89 5.44 -310.04 -1.69 -20.57 16 15 C 0.59 15.19 7.78 86.82 0.68 15.87 16 16 O -0.51 -14.33 13.51 -3.87 -0.05 -14.39 16 17 C 0.01 0.16 6.83 41.99 0.29 0.45 16 18 C -0.02 -0.19 9.72 22.74 0.22 0.03 16 19 C -0.11 -0.61 9.58 22.59 0.22 -0.39 16 20 C 0.30 4.02 7.58 132.85 1.01 5.02 16 21 N -0.42 -5.24 2.98 -355.38 -1.06 -6.30 16 22 C -0.04 -0.61 11.19 83.02 0.93 0.32 16 23 C -0.03 -0.42 11.85 83.50 0.99 0.57 16 24 N -0.51 -7.80 11.24 -199.63 -2.24 -10.04 16 25 C 0.21 1.93 11.91 179.97 2.14 4.07 16 26 N -0.27 -5.46 11.07 -54.76 -0.61 -6.06 16 27 N -0.20 -4.30 10.73 -48.50 -0.52 -4.82 16 28 N -0.34 -16.03 12.42 -54.49 -0.68 -16.70 16 29 H 0.26 14.98 7.22 -92.71 -0.67 14.31 16 30 H 0.06 2.77 7.94 -2.39 -0.02 2.75 16 31 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 32 H 0.21 5.79 8.06 -2.91 -0.02 5.77 16 33 H 0.18 5.80 5.91 -2.91 -0.02 5.78 16 34 H 0.43 12.35 8.17 -92.71 -0.76 11.59 16 35 H 0.20 0.96 7.71 -2.91 -0.02 0.94 16 36 H 0.22 -1.14 6.86 -2.91 -0.02 -1.16 16 37 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.26 -0.48 7.11 -2.91 -0.02 -0.50 16 Total: -1.00 -79.39 352.69 4.58 -74.80 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.48 Total: 14.22 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 9.89 Total: 8.30 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -7.79 Total: -134.79 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.05 Total: -14.39 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.84 kcal Total: -79.39 4.58 -74.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339211948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.790 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds