Wall clock time and date at job start Tue Mar 31 2020 23:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.77616 * 2 1 4 4 C 1.54333 * 110.84894 * 236.93065 * 2 1 3 5 5 N 1.47021 * 107.26290 * 219.67422 * 4 2 1 6 6 C 1.34772 * 125.64977 * 178.85104 * 5 4 2 7 7 O 1.21619 * 120.00032 * 184.79921 * 6 5 4 8 8 C 1.47229 * 120.00044 * 4.80306 * 6 5 4 9 9 C 1.37008 * 127.19389 * 174.22526 * 8 6 5 10 10 N 1.33320 * 106.37679 * 179.84649 * 9 8 6 11 11 N 1.28517 * 109.43435 * 0.42561 * 10 9 8 12 12 N 1.28709 * 110.63877 * 359.73048 * 11 10 9 13 13 H 0.97007 * 126.03598 * 180.02562 * 12 11 10 14 14 C 1.47428 * 108.70426 * 358.58382 * 5 4 2 15 15 C 1.54911 * 104.83111 * 24.35793 * 14 5 4 16 16 H 1.09006 * 111.00325 * 81.10517 * 15 14 5 17 17 N 1.46497 * 111.00589 * 204.91402 * 15 14 5 18 18 C 1.34769 * 120.00180 * 273.54655 * 17 15 14 19 19 O 1.21281 * 120.00109 * 0.02562 * 18 17 15 20 20 C 1.50704 * 120.00167 * 179.97438 * 18 17 15 21 21 S 1.80998 * 109.47381 * 180.02562 * 20 18 17 22 22 C 1.76195 * 100.00071 * 180.02562 * 21 20 18 23 23 H 1.08010 * 120.00205 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00119 * 179.97438 * 22 21 20 25 25 N 1.31629 * 119.99683 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99927 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46714 * 89.99980 * 26 24 22 28 28 H 1.48498 * 109.46927 * 209.99912 * 26 24 22 29 29 H 1.48500 * 109.47314 * 330.00352 * 26 24 22 30 30 H 1.09001 * 109.47120 * 296.76133 * 1 2 3 31 31 H 1.08999 * 109.47027 * 56.76772 * 1 2 3 32 32 H 1.09005 * 109.46916 * 176.76506 * 1 2 3 33 33 H 1.08993 * 109.99051 * 100.19563 * 4 2 1 34 34 H 1.09004 * 109.77844 * 339.02322 * 4 2 1 35 35 H 1.08005 * 126.80729 * 359.95160 * 9 8 6 36 36 H 1.09003 * 110.36628 * 143.19620 * 14 5 4 37 37 H 1.09000 * 110.36564 * 265.52092 * 14 5 4 38 38 H 0.97006 * 119.99473 * 93.54768 * 17 15 14 39 39 H 1.09004 * 109.47312 * 300.00401 * 20 18 17 40 40 H 1.09004 * 109.46848 * 59.99792 * 20 18 17 41 41 H 0.96998 * 119.99968 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0794 -0.7870 -1.2086 5 7 3.2445 -1.5507 -0.7389 6 6 3.9923 -2.3836 -1.4896 7 8 4.8829 -3.0322 -0.9745 8 6 3.7313 -2.5081 -2.9332 9 6 4.4622 -3.2185 -3.8488 10 7 3.8582 -3.0487 -5.0251 11 7 2.8344 -2.2867 -4.8741 12 7 2.7098 -1.9329 -3.6429 13 1 2.0152 -1.3606 -3.2811 14 6 3.4633 -1.2497 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4454 -1.6536 1.4383 17 7 2.2214 0.0697 2.3875 18 6 2.3158 -0.4733 3.6174 19 8 2.2833 -1.6781 3.7525 20 6 2.4629 0.4166 4.8247 21 16 2.5645 -0.6028 6.3169 22 6 2.7261 0.6572 7.5378 23 1 2.7371 1.6963 7.2434 24 6 2.8382 0.3145 8.8783 25 7 2.8244 -0.9519 9.2371 26 14 3.0103 1.6504 10.1726 27 1 1.6629 2.0576 10.6457 28 1 3.8010 1.1314 11.3174 29 1 3.7037 2.8240 9.5835 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5632 -0.8596 32 1 -0.3633 -1.0261 -0.0580 33 1 2.3814 -0.0970 -1.9964 34 1 1.3156 -1.4688 -1.5828 35 1 5.3504 -3.8018 -3.6555 36 1 3.7960 -2.1426 1.2170 37 1 4.1932 -0.4478 0.7985 38 1 2.2477 1.0333 2.2794 39 1 3.3712 1.0116 4.7291 40 1 1.6003 1.0792 4.8949 41 1 2.9031 -1.1914 10.1738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341990087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:24 Heat of formation + Delta-G solvation = 35.807277 kcal Electronic energy + Delta-G solvation = -26174.639417 eV Core-core repulsion = 22218.494879 eV Total energy + Delta-G solvation = -3956.144538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.88731 -40.83351 -39.34604 -38.03633 -34.83067 -33.85956 -32.95217 -32.48393 -31.96216 -30.21126 -28.32412 -27.34586 -25.56698 -24.98627 -23.54952 -22.85107 -21.45830 -21.08376 -20.49388 -18.81326 -17.88916 -17.49332 -17.32009 -16.81357 -16.36172 -16.22991 -15.39431 -15.18203 -14.87964 -14.84730 -14.78161 -14.26720 -13.98066 -13.94596 -13.64953 -13.33525 -13.04587 -12.72742 -12.63749 -12.52963 -12.27725 -11.96652 -11.72794 -11.68406 -11.31480 -11.21961 -11.11269 -11.08226 -10.81691 -10.72592 -10.05726 -9.88416 -9.61352 -9.42710 -9.15980 -9.10330 -8.31587 -6.57221 -6.27266 -3.98666 0.36248 1.78849 1.83161 2.15317 2.52957 2.86300 2.89576 3.18236 3.22488 3.26555 3.50044 3.54231 3.71235 3.91339 4.04971 4.14576 4.22207 4.41853 4.47042 4.54922 4.65477 4.70701 4.79044 5.02131 5.07958 5.08472 5.22667 5.35604 5.42257 5.49082 5.51910 5.54604 5.64844 5.73525 5.77444 6.01258 6.02759 6.35027 6.70509 7.38500 7.45247 7.54035 7.74414 8.29265 8.40067 9.18128 10.80090 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.002001 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.369362 B =13991.962492 C =14587.807720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.099 0.901 4 C 0.086 3.914 5 N -0.614 5.614 6 C 0.610 3.390 7 O -0.502 6.502 8 C -0.062 4.062 9 C 0.036 3.964 10 N -0.268 5.268 11 N -0.048 5.048 12 N -0.379 5.379 13 H 0.449 0.551 14 C 0.094 3.906 15 C 0.143 3.857 16 H 0.108 0.892 17 N -0.728 5.728 18 C 0.534 3.466 19 O -0.509 6.509 20 C -0.154 4.154 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.207 0.793 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.402 0.598 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 4.682 -25.524 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.038 4.038 5 N -0.349 5.349 6 C 0.396 3.604 7 O -0.374 6.374 8 C -0.196 4.196 9 C -0.124 4.124 10 N -0.133 5.133 11 N -0.030 5.030 12 N -0.110 5.110 13 H 0.300 0.700 14 C -0.029 4.029 15 C 0.035 3.965 16 H 0.126 0.874 17 N -0.383 5.383 18 C 0.320 3.680 19 O -0.382 6.382 20 C -0.304 4.304 21 S 0.168 5.832 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.223 0.777 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.699 2.133 -26.331 26.675 hybrid contribution 0.110 3.100 1.871 3.623 sum -3.589 5.234 -24.460 25.270 Atomic orbital electron populations 1.21819 0.92374 1.02975 1.03223 1.22467 0.97544 0.99808 0.92625 0.88325 1.22406 0.88054 0.94904 0.98397 1.48205 1.30103 1.44385 1.12189 1.16341 0.81888 0.79385 0.82810 1.90932 1.31260 1.43760 1.71466 1.22317 0.95550 1.06626 0.95139 1.23974 1.01420 0.99799 0.87160 1.75029 1.02740 1.12273 1.23255 1.78224 1.15195 1.11228 0.98388 1.46190 1.22383 1.35389 1.07082 0.69982 1.22843 0.98225 1.02955 0.78870 1.22015 0.95212 0.94545 0.84682 0.87392 1.45867 1.77468 1.09777 1.05213 1.20419 0.74854 0.89222 0.83457 1.90735 1.47069 1.14937 1.85480 1.23534 1.04954 1.03163 0.98780 1.85445 1.95750 1.09511 0.92478 1.22852 1.58530 0.93917 0.93218 0.90894 1.25001 0.94524 0.96206 0.97860 1.70010 1.46501 1.15924 1.17728 0.86161 0.78330 0.80788 0.80181 1.20262 1.20716 1.19691 0.90941 0.91755 0.91802 0.90774 0.90632 0.77658 0.88497 0.90213 0.76357 0.89054 0.89078 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.16 37.16 0.34 -0.23 16 2 C -0.10 -0.47 3.16 -88.78 -0.28 -0.75 16 3 H 0.10 0.31 8.00 -51.93 -0.42 -0.11 16 4 C 0.09 0.36 4.75 -3.06 -0.01 0.34 16 5 N -0.61 -4.98 3.33 -171.85 -0.57 -5.55 16 6 C 0.61 6.20 7.83 -12.61 -0.10 6.10 16 7 O -0.50 -7.02 17.16 5.26 0.09 -6.93 16 8 C -0.06 -0.52 6.97 -82.33 -0.57 -1.10 16 9 C 0.04 0.32 11.87 -17.35 -0.21 0.11 16 10 N -0.27 -2.74 12.35 30.48 0.38 -2.36 16 11 N -0.05 -0.44 13.35 60.35 0.81 0.37 16 12 N -0.38 -2.45 6.60 33.31 0.22 -2.23 16 13 H 0.45 1.39 5.18 -190.33 -0.99 0.40 16 14 C 0.09 0.93 6.62 -2.53 -0.02 0.92 16 15 C 0.14 1.25 2.77 -65.78 -0.18 1.06 16 16 H 0.11 1.17 7.64 -51.93 -0.40 0.77 16 17 N -0.73 -7.45 5.23 -51.73 -0.27 -7.72 16 18 C 0.53 8.67 7.85 -10.99 -0.09 8.58 16 19 O -0.51 -10.48 15.61 5.56 0.09 -10.39 16 20 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 21 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 22 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 23 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 24 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 25 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 26 Si 0.92 20.89 29.55 -169.99 -5.02 15.86 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 0.28 8.07 -51.93 -0.42 -0.14 16 33 H 0.07 0.15 7.19 -51.93 -0.37 -0.22 16 34 H 0.08 0.20 6.87 -51.93 -0.36 -0.15 16 35 H 0.21 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.10 1.27 7.99 -51.93 -0.41 0.85 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 2.85 8.51 -40.82 -0.35 2.50 16 39 H 0.09 1.54 8.14 -51.91 -0.42 1.11 16 40 H 0.09 1.51 8.14 -51.91 -0.42 1.09 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -37.05 364.75 -6.76 -43.81 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.79 Total: -1.67 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.70 Total: -0.08 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 1.29 Total: -42.38 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.18 Total: -17.32 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.05 -6.76 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341990087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.619 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds