Wall clock time and date at job start Tue Mar 31 2020 23:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.77616 * 2 1 4 4 C 1.54333 * 110.84894 * 236.93065 * 2 1 3 5 5 N 1.47021 * 107.26290 * 219.67422 * 4 2 1 6 6 C 1.34772 * 125.64977 * 178.85104 * 5 4 2 7 7 O 1.21619 * 120.00032 * 184.79921 * 6 5 4 8 8 C 1.47229 * 120.00044 * 4.80306 * 6 5 4 9 9 C 1.37008 * 127.19389 * 174.22526 * 8 6 5 10 10 N 1.33320 * 106.37679 * 179.84649 * 9 8 6 11 11 N 1.28517 * 109.43435 * 0.42561 * 10 9 8 12 12 N 1.28709 * 110.63877 * 359.73048 * 11 10 9 13 13 H 0.97007 * 126.03598 * 180.02562 * 12 11 10 14 14 C 1.47428 * 108.70426 * 358.58382 * 5 4 2 15 15 C 1.54911 * 104.83111 * 24.35793 * 14 5 4 16 16 H 1.09006 * 111.00325 * 81.10517 * 15 14 5 17 17 N 1.46497 * 111.00589 * 204.91402 * 15 14 5 18 18 C 1.34769 * 120.00180 * 273.54655 * 17 15 14 19 19 O 1.21281 * 120.00109 * 0.02562 * 18 17 15 20 20 C 1.50704 * 120.00167 * 179.97438 * 18 17 15 21 21 S 1.80998 * 109.47381 * 180.02562 * 20 18 17 22 22 C 1.76195 * 100.00071 * 180.02562 * 21 20 18 23 23 H 1.08010 * 120.00205 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00119 * 179.97438 * 22 21 20 25 25 N 1.31629 * 119.99683 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99927 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46714 * 89.99980 * 26 24 22 28 28 H 1.48498 * 109.46927 * 209.99912 * 26 24 22 29 29 H 1.48500 * 109.47314 * 330.00352 * 26 24 22 30 30 H 1.09001 * 109.47120 * 296.76133 * 1 2 3 31 31 H 1.08999 * 109.47027 * 56.76772 * 1 2 3 32 32 H 1.09005 * 109.46916 * 176.76506 * 1 2 3 33 33 H 1.08993 * 109.99051 * 100.19563 * 4 2 1 34 34 H 1.09004 * 109.77844 * 339.02322 * 4 2 1 35 35 H 1.08005 * 126.80729 * 359.95160 * 9 8 6 36 36 H 1.09003 * 110.36628 * 143.19620 * 14 5 4 37 37 H 1.09000 * 110.36564 * 265.52092 * 14 5 4 38 38 H 0.97006 * 119.99473 * 93.54768 * 17 15 14 39 39 H 1.09004 * 109.47312 * 300.00401 * 20 18 17 40 40 H 1.09004 * 109.46848 * 59.99792 * 20 18 17 41 41 H 0.96998 * 119.99968 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0794 -0.7870 -1.2086 5 7 3.2445 -1.5507 -0.7389 6 6 3.9923 -2.3836 -1.4896 7 8 4.8829 -3.0322 -0.9745 8 6 3.7313 -2.5081 -2.9332 9 6 4.4622 -3.2185 -3.8488 10 7 3.8582 -3.0487 -5.0251 11 7 2.8344 -2.2867 -4.8741 12 7 2.7098 -1.9329 -3.6429 13 1 2.0152 -1.3606 -3.2811 14 6 3.4633 -1.2497 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4454 -1.6536 1.4383 17 7 2.2214 0.0697 2.3875 18 6 2.3158 -0.4733 3.6174 19 8 2.2833 -1.6781 3.7525 20 6 2.4629 0.4166 4.8247 21 16 2.5645 -0.6028 6.3169 22 6 2.7261 0.6572 7.5378 23 1 2.7371 1.6963 7.2434 24 6 2.8382 0.3145 8.8783 25 7 2.8244 -0.9519 9.2371 26 14 3.0103 1.6504 10.1726 27 1 1.6629 2.0576 10.6457 28 1 3.8010 1.1314 11.3174 29 1 3.7037 2.8240 9.5835 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5632 -0.8596 32 1 -0.3633 -1.0261 -0.0580 33 1 2.3814 -0.0970 -1.9964 34 1 1.3156 -1.4688 -1.5828 35 1 5.3504 -3.8018 -3.6555 36 1 3.7960 -2.1426 1.2170 37 1 4.1932 -0.4478 0.7985 38 1 2.2477 1.0333 2.2794 39 1 3.3712 1.0116 4.7291 40 1 1.6003 1.0792 4.8949 41 1 2.9031 -1.1914 10.1738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341990087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:23 Heat of formation + Delta-G solvation = 5.806742 kcal Electronic energy + Delta-G solvation = -26175.940338 eV Core-core repulsion = 22218.494879 eV Total energy + Delta-G solvation = -3957.445459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.55337 -41.61615 -40.46900 -38.93561 -35.73770 -34.64375 -34.57418 -33.63199 -32.65200 -31.35974 -29.38795 -27.80838 -27.64761 -25.70544 -24.26876 -23.58756 -22.11014 -21.75195 -21.60996 -19.88373 -19.38106 -18.27851 -18.06027 -17.70431 -17.42906 -17.12071 -16.87410 -16.44150 -16.36038 -15.83484 -15.46823 -15.32406 -14.98886 -14.68718 -14.57238 -14.42578 -14.28964 -13.64994 -13.55790 -13.36464 -13.16617 -13.14324 -12.89234 -12.62014 -12.55977 -12.38096 -12.23098 -11.93984 -11.81452 -11.70538 -11.54409 -11.13949 -11.00512 -10.77180 -10.32792 -10.25918 -9.97486 -8.66003 -8.34423 -6.12093 -0.32306 1.08001 1.14498 1.27620 1.42625 1.44601 1.52832 1.57036 1.64089 1.78939 2.25213 2.29258 2.91695 3.00043 3.15755 3.27551 3.33267 3.56173 3.68022 3.81346 3.89673 3.97808 4.00633 4.06244 4.19769 4.32910 4.39516 4.53198 4.58924 4.66379 4.73269 4.79853 4.87181 4.98094 5.08717 5.36483 5.42492 5.43767 5.53760 6.01531 6.20121 6.46195 6.61782 7.06806 7.07268 7.21462 8.74576 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.002001 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.369362 B =13991.962492 C =14587.807720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.127 0.873 4 C 0.076 3.924 5 N -0.608 5.608 6 C 0.611 3.389 7 O -0.551 6.551 8 C -0.061 4.061 9 C 0.032 3.968 10 N -0.293 5.293 11 N -0.053 5.053 12 N -0.352 5.352 13 H 0.464 0.536 14 C 0.096 3.904 15 C 0.140 3.860 16 H 0.085 0.915 17 N -0.698 5.698 18 C 0.537 3.463 19 O -0.561 6.561 20 C -0.129 4.129 21 S -0.156 6.156 22 C -0.544 4.544 23 H 0.085 0.915 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 0.998 3.002 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.257 1.257 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.217 0.783 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.423 0.577 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 8.170 -27.453 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.145 0.855 4 C -0.046 4.046 5 N -0.341 5.341 6 C 0.397 3.603 7 O -0.427 6.427 8 C -0.195 4.195 9 C -0.128 4.128 10 N -0.157 5.157 11 N -0.035 5.035 12 N -0.087 5.087 13 H 0.319 0.681 14 C -0.028 4.028 15 C 0.033 3.967 16 H 0.103 0.897 17 N -0.352 5.352 18 C 0.323 3.677 19 O -0.438 6.438 20 C -0.280 4.280 21 S 0.071 5.929 22 C -0.692 4.692 23 H 0.103 0.897 24 C -0.193 4.193 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.193 1.193 28 H -0.206 1.206 29 H -0.181 1.181 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.234 0.766 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.839 5.709 -28.327 29.299 hybrid contribution 0.398 2.038 2.344 3.131 sum -4.441 7.747 -25.983 27.474 Atomic orbital electron populations 1.21845 0.91482 1.03030 1.04023 1.22467 0.98053 1.00376 0.89654 0.85523 1.22809 0.87013 0.95648 0.99148 1.48185 1.30713 1.43982 1.11264 1.16499 0.81420 0.79000 0.83365 1.90910 1.33531 1.45839 1.72432 1.21970 0.96237 1.07224 0.94107 1.24266 1.01819 0.99744 0.86957 1.75035 1.03462 1.13255 1.23959 1.78169 1.15000 1.11237 0.99103 1.46119 1.21911 1.34530 1.06151 0.68087 1.22671 0.98981 1.01354 0.79818 1.22079 0.94547 0.94679 0.85414 0.89695 1.45484 1.75013 1.11049 1.03701 1.20108 0.74751 0.88103 0.84705 1.90731 1.49833 1.16951 1.86331 1.23369 1.06966 1.02175 0.95520 1.85651 1.96097 1.13604 0.97505 1.23204 1.57996 0.94273 0.93691 0.89704 1.26135 0.93959 0.98715 1.00507 1.70185 1.47949 1.18482 1.18217 0.84962 0.78664 0.77674 0.76742 1.19291 1.20590 1.18077 0.91927 0.88908 0.92492 0.87224 0.88631 0.76595 0.92742 0.89339 0.73864 0.87029 0.86721 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.16 71.99 0.66 0.08 16 2 C -0.09 -0.43 3.16 -9.60 -0.03 -0.46 16 3 H 0.13 0.05 8.00 -2.39 -0.02 0.03 16 4 C 0.08 0.34 4.75 86.73 0.41 0.75 16 5 N -0.61 -8.97 3.33 -815.87 -2.71 -11.68 16 6 C 0.61 12.09 7.83 86.61 0.68 12.76 16 7 O -0.55 -16.02 17.16 -4.09 -0.07 -16.09 16 8 C -0.06 -0.93 6.97 40.41 0.28 -0.65 16 9 C 0.03 0.55 11.87 84.18 1.00 1.55 16 10 N -0.29 -5.64 12.35 -57.50 -0.71 -6.35 16 11 N -0.05 -0.84 13.35 37.02 0.49 -0.35 16 12 N -0.35 -3.58 6.60 -48.52 -0.32 -3.90 16 13 H 0.46 1.02 5.18 -219.89 -1.14 -0.12 16 14 C 0.10 1.86 6.62 86.85 0.58 2.44 16 15 C 0.14 2.25 2.77 46.38 0.13 2.37 16 16 H 0.08 1.85 7.64 -2.38 -0.02 1.83 16 17 N -0.70 -12.96 5.23 -435.97 -2.28 -15.24 16 18 C 0.54 17.29 7.85 87.66 0.69 17.98 16 19 O -0.56 -24.07 15.61 -3.03 -0.05 -24.12 16 20 C -0.13 -4.61 6.16 71.24 0.44 -4.17 16 21 S -0.16 -8.33 20.57 -56.49 -1.16 -9.49 16 22 C -0.54 -30.08 9.50 67.96 0.65 -29.43 16 23 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 24 C 0.01 0.64 5.49 84.86 0.47 1.11 16 25 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 26 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 0.33 8.07 -2.38 -0.02 0.31 16 33 H 0.11 -0.17 7.19 -2.39 -0.02 -0.19 16 34 H 0.10 0.11 6.87 -2.38 -0.02 0.09 16 35 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.42 4.44 8.51 -92.70 -0.79 3.65 16 39 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -87.05 364.75 0.62 -86.44 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.83 Total: 6.87 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.94 Total: 4.33 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -5.24 Total: -92.60 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.12 Total: -40.21 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -87.05 0.62 -86.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341990087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.245 kcal (2) G-P(sol) polarization free energy of solvation -87.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds