Wall clock time and date at job start Tue Mar 31 2020 22:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47578 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46872 * 299.99885 * 3 2 1 6 6 H 1.48503 * 109.47143 * 59.99423 * 3 2 1 7 7 C 1.37882 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99960 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99873 * 264.75561 * 10 9 7 12 12 C 1.52992 * 109.47545 * 274.58152 * 11 10 9 13 13 C 1.52999 * 117.49844 * 243.62503 * 12 11 10 14 14 C 1.52997 * 117.50353 * 174.99841 * 12 11 10 15 15 C 1.34773 * 120.00268 * 84.75365 * 10 9 7 16 16 O 1.21355 * 120.00139 * 174.67374 * 15 10 9 17 17 C 1.49350 * 119.99947 * 354.68103 * 15 10 9 18 18 O 1.21384 * 119.99859 * 354.40314 * 17 15 10 19 19 N 1.34779 * 120.00002 * 174.68540 * 17 15 10 20 20 C 1.39839 * 119.99535 * 174.66742 * 19 17 15 21 21 C 1.38842 * 120.44409 * 145.63232 * 20 19 17 22 22 N 1.31868 * 120.73668 * 179.97438 * 21 20 19 23 23 C 1.32006 * 121.78786 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.58420 * 179.97438 * 23 22 21 25 25 C 1.38783 * 120.83485 * 0.02562 * 23 22 21 26 26 F 1.35100 * 120.41335 * 179.97438 * 25 23 22 27 27 C 1.38611 * 119.17313 * 359.68132 * 25 23 22 28 28 H 0.96996 * 119.99564 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47369 * 59.99655 * 9 7 2 30 30 H 1.09001 * 109.46693 * 300.00104 * 9 7 2 31 31 H 1.09001 * 109.46767 * 34.58175 * 11 10 9 32 32 H 1.09002 * 109.47346 * 154.57699 * 11 10 9 33 33 H 1.09003 * 115.55139 * 29.32760 * 12 11 10 34 34 H 1.08995 * 117.50208 * 359.97438 * 13 12 11 35 35 H 1.09003 * 117.49682 * 145.02045 * 13 12 11 36 36 H 1.09001 * 117.50108 * 214.97589 * 14 12 11 37 37 H 1.08998 * 117.49965 * 0.02562 * 14 12 11 38 38 H 0.96993 * 119.99994 * 354.67274 * 19 17 15 39 39 H 1.08004 * 119.63530 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.81735 * 180.29677 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.5919 -4.2454 -1.2611 12 6 1.5701 -5.3236 -1.6272 13 6 2.0606 -6.7718 -1.6833 14 6 1.7348 -6.0236 -2.9776 15 6 2.7212 -4.0551 1.1646 16 8 3.4335 -5.0375 1.1768 17 6 2.4186 -3.3364 2.4383 18 8 1.7911 -2.2976 2.4147 19 7 2.8472 -3.8382 3.6135 20 6 2.6618 -3.1110 4.7935 21 6 2.4080 -3.7660 5.9910 22 7 2.2327 -3.0860 7.1072 23 6 2.2898 -1.7675 7.1344 24 9 2.1030 -1.1158 8.3030 25 6 2.5382 -1.0422 5.9776 26 9 2.5943 0.3071 6.0151 27 6 2.7342 -1.7197 4.7843 28 1 -0.4849 0.8400 -0.0004 29 1 0.6248 -2.5572 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6246 -3.4932 -2.0493 32 1 3.5765 -4.7001 -1.1517 33 1 0.5546 -5.1493 -1.2713 34 1 3.1112 -6.9563 -1.4598 35 1 1.3678 -7.5505 -1.3642 36 1 0.8278 -6.3102 -3.5099 37 1 2.5714 -5.7164 -3.6051 38 1 3.2842 -4.7037 3.6408 39 1 2.3534 -4.8446 6.0087 40 1 2.9341 -1.1821 3.8692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348281937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:34 Heat of formation + Delta-G solvation = -67.609994 kcal Electronic energy + Delta-G solvation = -29408.053335 eV Core-core repulsion = 24861.291150 eV Total energy + Delta-G solvation = -4546.762185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.55552 -48.65081 -41.04759 -39.83110 -38.28501 -37.03450 -35.65784 -34.39691 -32.49460 -32.15897 -29.91811 -28.12913 -26.93324 -24.79426 -24.28194 -23.17440 -22.36362 -22.13070 -20.59577 -19.70972 -18.38844 -18.22995 -17.98082 -16.96874 -16.70750 -16.62352 -16.57819 -15.89574 -15.31992 -15.18608 -15.12149 -14.89075 -14.61942 -14.36053 -14.21013 -14.15485 -13.59073 -13.44798 -13.21987 -12.96428 -12.76097 -12.43230 -12.13669 -11.77019 -11.52967 -11.38167 -11.05924 -11.00332 -10.85081 -10.64264 -10.35232 -10.24878 -10.10372 -9.80748 -9.71198 -9.62522 -8.91759 -8.49005 -8.38446 -8.01663 -6.12429 -4.14886 0.46318 0.74916 1.88322 2.47440 3.16268 3.18662 3.24269 3.33399 3.34601 3.64399 3.72906 3.89726 4.01023 4.27691 4.37706 4.50506 4.68877 4.88385 4.93033 5.09667 5.15313 5.17909 5.24945 5.47406 5.58944 5.73675 5.76678 5.87743 6.00652 6.02885 6.05242 6.23696 6.37229 6.45530 6.57704 7.02334 7.20810 7.25151 7.30264 7.75317 7.91073 8.04171 8.09766 8.45445 8.84567 9.48258 10.96484 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004211 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.030883 B = 6647.385847 C = 9026.024677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.230 3.770 10 N -0.554 5.554 11 C 0.147 3.853 12 C -0.162 4.162 13 C -0.175 4.175 14 C -0.178 4.178 15 C 0.510 3.490 16 O -0.554 6.554 17 C 0.486 3.514 18 O -0.420 6.420 19 N -0.656 5.656 20 C 0.137 3.863 21 C 0.100 3.900 22 N -0.465 5.465 23 C 0.254 3.746 24 F -0.105 7.105 25 C 0.060 3.940 26 F -0.114 7.114 27 C -0.091 4.091 28 H 0.262 0.738 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.424 0.576 39 H 0.179 0.821 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -9.887 5.021 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.111 3.889 10 N -0.283 5.283 11 C 0.024 3.976 12 C -0.182 4.182 13 C -0.212 4.212 14 C -0.215 4.215 15 C 0.292 3.708 16 O -0.435 6.435 17 C 0.267 3.733 18 O -0.286 6.286 19 N -0.306 5.306 20 C 0.038 3.962 21 C -0.061 4.061 22 N -0.178 5.178 23 C 0.098 3.902 24 F -0.084 7.084 25 C 0.037 3.963 26 F -0.092 7.092 27 C -0.120 4.120 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.262 0.738 39 H 0.196 0.804 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.267 -9.810 5.678 12.112 hybrid contribution 0.619 1.518 -0.508 1.717 sum 4.887 -8.292 5.170 10.925 Atomic orbital electron populations 1.69911 1.05922 1.26878 1.50015 1.24794 0.94734 0.98849 0.94862 0.86572 0.80024 0.83850 0.77754 1.19875 1.20952 1.20808 1.21187 0.92876 0.90118 1.51173 0.92667 1.19916 0.87412 0.82061 0.99476 1.48222 1.42436 1.33538 1.04094 1.21057 0.96623 0.94293 0.85670 1.22726 1.01066 0.93695 1.00681 1.22983 1.02069 0.94873 1.01228 1.22917 1.03193 1.04692 0.90731 1.19530 0.81950 0.84308 0.84992 1.90672 1.39646 1.26327 1.86824 1.20676 0.81029 0.86800 0.84781 1.91074 1.31979 1.20231 1.85281 1.43246 1.60085 1.23344 1.03968 1.18522 0.98960 0.90949 0.87787 1.22416 0.97921 1.00559 0.85206 1.67048 1.14558 1.05835 1.30358 1.18031 1.03416 0.87551 0.81194 1.91645 1.92465 1.78956 1.45315 1.18178 1.05986 0.78681 0.93504 1.91587 1.93672 1.27114 1.96877 1.21766 0.98006 0.93742 0.98457 0.92779 0.94598 0.92278 0.89311 0.90211 0.87562 0.88655 0.89357 0.88979 0.88801 0.73761 0.80393 0.80834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.10 7.72 -34.44 -0.27 -13.37 16 8 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.23 5.28 4.77 -5.19 -0.02 5.25 16 10 N -0.55 -10.64 2.47 -175.61 -0.43 -11.07 16 11 C 0.15 2.39 5.68 -4.05 -0.02 2.36 16 12 C -0.16 -2.32 6.01 -90.63 -0.54 -2.87 16 13 C -0.17 -2.15 10.18 -26.73 -0.27 -2.42 16 14 C -0.18 -2.06 10.25 -26.73 -0.27 -2.34 16 15 C 0.51 9.37 7.68 -11.63 -0.09 9.28 16 16 O -0.55 -10.01 16.06 5.49 0.09 -9.92 16 17 C 0.49 8.52 7.45 -11.63 -0.09 8.44 16 18 O -0.42 -8.88 9.96 5.47 0.05 -8.83 16 19 N -0.66 -8.65 5.33 -10.19 -0.05 -8.70 16 20 C 0.14 1.78 6.27 -83.58 -0.52 1.26 16 21 C 0.10 1.10 11.12 -17.31 -0.19 0.91 16 22 N -0.46 -6.16 10.36 -13.37 -0.14 -6.29 16 23 C 0.25 3.62 8.41 -17.28 -0.15 3.47 16 24 F -0.10 -1.50 17.21 2.25 0.04 -1.46 16 25 C 0.06 0.89 7.35 -39.24 -0.29 0.61 16 26 F -0.11 -1.80 17.19 2.25 0.04 -1.76 16 27 C -0.09 -1.38 8.75 -39.04 -0.34 -1.72 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.04 0.86 8.03 -51.93 -0.42 0.45 16 30 H 0.06 1.48 5.93 -51.93 -0.31 1.17 16 31 H 0.09 1.45 8.11 -51.93 -0.42 1.02 16 32 H 0.08 1.26 7.10 -51.93 -0.37 0.89 16 33 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.10 1.18 8.03 -51.93 -0.42 0.76 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.42 4.42 8.33 -40.82 -0.34 4.08 16 39 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.17 2.96 6.61 -52.48 -0.35 2.61 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -29.39 358.69 -6.73 -36.12 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.28 Total: 4.06 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -3.17 Total: 10.64 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.11 Total: -50.11 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.14 Total: -18.75 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.39 -6.73 -36.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348281937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.490 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds