Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47578 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46872 * 299.99885 * 3 2 1 6 6 H 1.48503 * 109.47143 * 59.99423 * 3 2 1 7 7 C 1.37882 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99960 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99873 * 264.75561 * 10 9 7 12 12 C 1.52992 * 109.47545 * 274.58152 * 11 10 9 13 13 C 1.52999 * 117.49844 * 243.62503 * 12 11 10 14 14 C 1.52997 * 117.50353 * 174.99841 * 12 11 10 15 15 C 1.34773 * 120.00268 * 84.75365 * 10 9 7 16 16 O 1.21355 * 120.00139 * 174.67374 * 15 10 9 17 17 C 1.49350 * 119.99947 * 354.68103 * 15 10 9 18 18 O 1.21384 * 119.99859 * 354.40314 * 17 15 10 19 19 N 1.34779 * 120.00002 * 174.68540 * 17 15 10 20 20 C 1.39839 * 119.99535 * 174.66742 * 19 17 15 21 21 C 1.38842 * 120.44409 * 145.63232 * 20 19 17 22 22 N 1.31868 * 120.73668 * 179.97438 * 21 20 19 23 23 C 1.32006 * 121.78786 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.58420 * 179.97438 * 23 22 21 25 25 C 1.38783 * 120.83485 * 0.02562 * 23 22 21 26 26 F 1.35100 * 120.41335 * 179.97438 * 25 23 22 27 27 C 1.38611 * 119.17313 * 359.68132 * 25 23 22 28 28 H 0.96996 * 119.99564 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47369 * 59.99655 * 9 7 2 30 30 H 1.09001 * 109.46693 * 300.00104 * 9 7 2 31 31 H 1.09001 * 109.46767 * 34.58175 * 11 10 9 32 32 H 1.09002 * 109.47346 * 154.57699 * 11 10 9 33 33 H 1.09003 * 115.55139 * 29.32760 * 12 11 10 34 34 H 1.08995 * 117.50208 * 359.97438 * 13 12 11 35 35 H 1.09003 * 117.49682 * 145.02045 * 13 12 11 36 36 H 1.09001 * 117.50108 * 214.97589 * 14 12 11 37 37 H 1.08998 * 117.49965 * 0.02562 * 14 12 11 38 38 H 0.96993 * 119.99994 * 354.67274 * 19 17 15 39 39 H 1.08004 * 119.63530 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.81735 * 180.29677 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.5919 -4.2454 -1.2611 12 6 1.5701 -5.3236 -1.6272 13 6 2.0606 -6.7718 -1.6833 14 6 1.7348 -6.0236 -2.9776 15 6 2.7212 -4.0551 1.1646 16 8 3.4335 -5.0375 1.1768 17 6 2.4186 -3.3364 2.4383 18 8 1.7911 -2.2976 2.4147 19 7 2.8472 -3.8382 3.6135 20 6 2.6618 -3.1110 4.7935 21 6 2.4080 -3.7660 5.9910 22 7 2.2327 -3.0860 7.1072 23 6 2.2898 -1.7675 7.1344 24 9 2.1030 -1.1158 8.3030 25 6 2.5382 -1.0422 5.9776 26 9 2.5943 0.3071 6.0151 27 6 2.7342 -1.7197 4.7843 28 1 -0.4849 0.8400 -0.0004 29 1 0.6248 -2.5572 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6246 -3.4932 -2.0493 32 1 3.5765 -4.7001 -1.1517 33 1 0.5546 -5.1493 -1.2713 34 1 3.1112 -6.9563 -1.4598 35 1 1.3678 -7.5505 -1.3642 36 1 0.8278 -6.3102 -3.5099 37 1 2.5714 -5.7164 -3.6051 38 1 3.2842 -4.7037 3.6408 39 1 2.3534 -4.8446 6.0087 40 1 2.9341 -1.1821 3.8692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348281937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = -85.446193 kcal Electronic energy + Delta-G solvation = -29408.826771 eV Core-core repulsion = 24861.291150 eV Total energy + Delta-G solvation = -4547.535621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.72584 -49.82482 -42.32989 -41.11637 -39.61822 -38.25397 -37.01441 -35.83968 -34.40906 -33.30163 -31.07137 -29.75260 -28.49985 -26.09951 -25.44952 -24.90344 -23.60707 -23.12885 -21.79729 -20.99120 -19.62893 -19.39923 -19.20974 -18.58345 -18.32373 -17.96440 -17.82771 -17.10573 -16.77974 -16.66543 -16.31406 -16.15397 -16.00830 -15.86206 -15.42377 -15.32501 -14.93820 -14.70403 -14.36484 -14.32931 -14.12825 -13.95797 -13.70528 -13.37538 -13.01855 -12.79487 -12.56221 -12.39085 -12.29352 -12.15484 -11.93252 -11.73425 -11.38766 -11.27863 -10.85884 -10.80266 -10.63283 -10.22725 -9.66803 -9.51292 -8.15394 -6.22355 -0.65918 -0.37951 0.47286 1.19309 1.36031 1.40223 1.47817 2.01404 2.04864 2.29476 2.35154 2.49451 2.78588 2.96315 3.14175 3.19786 3.35642 3.48183 3.64789 3.84803 4.04761 4.11355 4.14551 4.37600 4.40364 4.63321 4.65779 4.77669 4.84221 4.85943 4.87734 5.06567 5.25511 5.30392 5.32248 5.37482 5.51130 5.75236 5.94753 6.10227 6.18889 6.30809 6.68771 6.81546 7.02357 7.43683 8.92907 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004211 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.030883 B = 6647.385847 C = 9026.024677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.024 3.976 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.510 4.510 8 H 0.048 0.952 9 C 0.251 3.749 10 N -0.561 5.561 11 C 0.146 3.854 12 C -0.187 4.187 13 C -0.165 4.165 14 C -0.159 4.159 15 C 0.510 3.490 16 O -0.547 6.547 17 C 0.489 3.511 18 O -0.464 6.464 19 N -0.632 5.632 20 C 0.131 3.869 21 C 0.132 3.868 22 N -0.469 5.469 23 C 0.255 3.745 24 F -0.106 7.106 25 C 0.046 3.954 26 F -0.125 7.125 27 C -0.101 4.101 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.440 0.560 39 H 0.228 0.772 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -12.029 5.288 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.214 1.214 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.131 3.869 10 N -0.290 5.290 11 C 0.024 3.976 12 C -0.206 4.206 13 C -0.202 4.202 14 C -0.196 4.196 15 C 0.292 3.708 16 O -0.428 6.428 17 C 0.271 3.729 18 O -0.332 6.332 19 N -0.283 5.283 20 C 0.033 3.967 21 C -0.029 4.029 22 N -0.182 5.182 23 C 0.101 3.899 24 F -0.086 7.086 25 C 0.022 3.978 26 F -0.104 7.104 27 C -0.129 4.129 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.282 0.718 39 H 0.244 0.756 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.320 -11.997 5.966 14.416 hybrid contribution 0.357 2.056 -0.543 2.156 sum 5.677 -9.941 5.423 12.667 Atomic orbital electron populations 1.70007 1.07099 1.27363 1.51704 1.25443 0.95366 1.01662 0.95045 0.85751 0.79183 0.80665 0.77523 1.19300 1.20194 1.21443 1.21371 0.92532 0.91250 1.49681 0.93390 1.19377 0.87449 0.82463 0.97619 1.48138 1.42231 1.33063 1.05594 1.21174 0.97532 0.94614 0.84261 1.22562 0.99729 0.94517 1.03781 1.23037 1.02300 0.93500 1.01383 1.23034 1.04139 1.02474 0.89949 1.19666 0.81733 0.84336 0.85105 1.90664 1.39273 1.25989 1.86847 1.20609 0.80548 0.86161 0.85596 1.91076 1.34252 1.22031 1.85883 1.42948 1.58958 1.23594 1.02831 1.18600 0.99659 0.90162 0.88305 1.23114 0.94159 1.02277 0.83309 1.67219 1.14966 1.05109 1.30942 1.18057 1.03076 0.87967 0.80806 1.91637 1.92422 1.79183 1.45310 1.18210 1.07386 0.78326 0.93846 1.91550 1.93948 1.27948 1.96946 1.21649 0.98769 0.94876 0.97644 0.92927 0.96104 0.94300 0.89932 0.89551 0.89198 0.88498 0.88289 0.87599 0.87601 0.71772 0.75606 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.71 13.29 21.45 0.28 -52.42 16 2 C 0.02 1.31 5.46 84.66 0.46 1.77 16 3 Si 0.94 43.54 29.54 68.60 2.03 45.56 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.51 -26.49 7.72 25.60 0.20 -26.29 16 8 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 9 C 0.25 11.88 4.77 85.63 0.41 12.29 16 10 N -0.56 -21.69 2.47 -827.88 -2.04 -23.74 16 11 C 0.15 4.70 5.68 86.38 0.49 5.19 16 12 C -0.19 -5.18 6.01 -10.80 -0.06 -5.24 16 13 C -0.17 -3.71 10.18 30.60 0.31 -3.40 16 14 C -0.16 -3.32 10.25 30.59 0.31 -3.01 16 15 C 0.51 18.41 7.68 87.24 0.67 19.08 16 16 O -0.55 -18.81 16.06 -3.26 -0.05 -18.86 16 17 C 0.49 17.02 7.45 87.24 0.65 17.67 16 18 O -0.46 -20.09 9.96 -3.35 -0.03 -20.12 16 19 N -0.63 -15.53 5.33 -304.51 -1.62 -17.15 16 20 C 0.13 3.20 6.27 38.27 0.24 3.44 16 21 C 0.13 2.48 11.12 84.83 0.94 3.43 16 22 N -0.47 -11.24 10.36 -196.22 -2.03 -13.27 16 23 C 0.26 7.02 8.41 84.80 0.71 7.73 16 24 F -0.11 -2.98 17.21 44.97 0.77 -2.20 16 25 C 0.05 1.37 7.35 22.49 0.17 1.54 16 26 F -0.13 -4.08 17.19 44.97 0.77 -3.31 16 27 C -0.10 -3.06 8.75 22.62 0.20 -2.86 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 30 H 0.04 2.03 5.93 -2.39 -0.01 2.02 16 31 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 32 H 0.09 2.63 7.10 -2.39 -0.02 2.61 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.10 2.16 8.03 -2.39 -0.02 2.14 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.44 7.84 8.33 -92.71 -0.77 7.07 16 39 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.15 5.34 6.61 -2.91 -0.02 5.32 16 Total: -1.00 -64.49 358.69 4.12 -60.37 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.35 Total: 13.81 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 5.70 Total: 31.33 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -5.42 Total: -106.58 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.09 Total: -38.98 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.55 Total: -5.51 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -64.49 4.12 -60.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348281937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.077 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds