Wall clock time and date at job start Tue Mar 31 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48501 * 109.46964 * 270.00124 * 3 2 1 5 5 H 1.48498 * 109.47026 * 29.99701 * 3 2 1 6 6 H 1.48496 * 109.47351 * 149.99681 * 3 2 1 7 7 C 1.38945 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99535 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00537 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00423 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99810 * 359.72998 * 10 9 7 12 12 C 1.50697 * 120.00288 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47167 * 179.72681 * 12 10 9 14 14 C 1.34776 * 119.99631 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00624 * 354.89788 * 14 13 12 16 16 N 1.34781 * 120.00015 * 174.90200 * 14 13 12 17 17 C 1.47230 * 121.34384 * 184.91766 * 16 14 13 18 18 C 1.52777 * 107.90946 * 115.77296 * 17 16 14 19 19 C 1.50604 * 110.86387 * 47.47180 * 18 17 16 20 20 C 1.38961 * 117.59463 * 159.94735 * 19 18 17 21 21 C 1.38138 * 120.62503 * 179.52836 * 20 19 18 22 22 F 1.35100 * 120.10338 * 179.91773 * 21 20 19 23 23 C 1.38455 * 119.80024 * 359.91560 * 21 20 19 24 24 C 1.38137 * 119.66050 * 0.24621 * 23 21 20 25 25 F 1.35099 * 119.75659 * 180.02562 * 24 23 21 26 26 C 1.37656 * 122.85654 * 339.84919 * 19 18 17 27 27 C 1.46683 * 121.33568 * 4.63740 * 16 14 13 28 28 H 0.97004 * 119.99675 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99282 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46942 * 299.72734 * 12 10 9 31 31 H 1.08993 * 109.46966 * 59.72310 * 12 10 9 32 32 H 0.96998 * 120.00102 * 359.97438 * 13 12 10 33 33 H 1.08999 * 109.77273 * 235.37854 * 17 16 14 34 34 H 1.09008 * 109.77017 * 356.16809 * 17 16 14 35 35 H 1.09001 * 109.19606 * 167.82379 * 18 17 16 36 36 H 1.08996 * 109.20032 * 287.16104 * 18 17 16 37 37 H 1.08006 * 119.68496 * 359.51034 * 20 19 18 38 38 H 1.07997 * 120.16956 * 180.26933 * 23 21 20 39 39 H 1.08997 * 109.43865 * 344.47913 * 27 16 14 40 40 H 1.08998 * 109.43537 * 104.35536 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 -0.0044 12 6 1.2437 -4.8629 0.0000 13 7 2.1957 -5.9764 -0.0065 14 6 1.7464 -7.2471 -0.0087 15 8 0.5552 -7.4710 0.0884 16 7 2.6175 -8.2697 -0.1183 17 6 2.1533 -9.6623 -0.2314 18 6 2.5762 -10.1887 -1.6019 19 6 4.0210 -9.8652 -1.8782 20 6 4.6738 -10.6141 -2.8497 21 6 5.9964 -10.3640 -3.1602 22 9 6.6214 -11.0997 -4.1054 23 6 6.6797 -9.3571 -2.4999 24 6 6.0334 -8.6137 -1.5314 25 9 6.6981 -7.6303 -0.8862 26 6 4.7036 -8.8705 -1.2152 27 6 4.0660 -8.0394 -0.1359 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 -0.0002 30 1 0.6204 -4.9230 0.8921 31 1 0.6137 -4.9183 -0.8877 32 1 3.1493 -5.7992 -0.0100 33 1 2.6084 -10.2675 0.5526 34 1 1.0675 -9.6975 -0.1419 35 1 2.4396 -11.2698 -1.6283 36 1 1.9537 -9.7298 -2.3699 37 1 4.1422 -11.3994 -3.3667 38 1 7.7126 -9.1535 -2.7410 39 1 4.2633 -6.9846 -0.3270 40 1 4.4892 -8.3178 0.8292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348793413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:30 Heat of formation + Delta-G solvation = -142.144505 kcal Electronic energy + Delta-G solvation = -28607.209397 eV Core-core repulsion = 24057.215153 eV Total energy + Delta-G solvation = -4549.994244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.12646 -50.05449 -41.78359 -40.51829 -39.85620 -37.12502 -36.28183 -35.45573 -33.81989 -33.35506 -32.28957 -30.67314 -29.08294 -26.93285 -26.24633 -24.97164 -23.54076 -22.56833 -21.40502 -20.72398 -20.11929 -19.55702 -18.66791 -18.11916 -17.78052 -17.49001 -17.22863 -16.99671 -16.78459 -16.58429 -16.44598 -16.37885 -15.96938 -15.81011 -15.44174 -15.38805 -15.22600 -14.99799 -14.56412 -14.12127 -13.97530 -13.84794 -13.54871 -13.44866 -13.19567 -13.07992 -12.90862 -12.75599 -12.45882 -12.34112 -12.12951 -11.93561 -11.57502 -11.43225 -10.56658 -10.37098 -10.10123 -9.91571 -9.80809 -9.59275 -8.51315 -6.01399 -0.18863 -0.10703 1.36045 1.39672 1.44683 1.56034 1.88593 2.01730 2.18546 2.27215 2.70110 2.76228 3.12789 3.15997 3.21257 3.37392 3.41099 3.81346 3.91345 4.03626 4.15063 4.19288 4.25798 4.38076 4.41181 4.45761 4.53207 4.67068 4.70070 4.76605 4.87531 4.93795 5.06419 5.21148 5.26263 5.36513 5.38661 5.65624 5.80756 5.91906 6.47727 6.78578 7.03372 7.37363 7.45827 7.94316 8.65628 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.002500 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.083258 B =11199.531453 C =12438.317457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.141 3.859 13 N -0.728 5.728 14 C 0.713 3.287 15 O -0.619 6.619 16 N -0.625 5.625 17 C 0.122 3.878 18 C -0.093 4.093 19 C -0.011 4.011 20 C -0.154 4.154 21 C 0.125 3.875 22 F -0.134 7.134 23 C -0.195 4.195 24 C 0.124 3.876 25 F -0.135 7.135 26 C -0.145 4.145 27 C 0.153 3.847 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.407 0.593 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -24.183 -4.117 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.012 3.988 13 N -0.388 5.388 14 C 0.415 3.585 15 O -0.500 6.500 16 N -0.362 5.362 17 C 0.001 3.999 18 C -0.130 4.130 19 C -0.011 4.011 20 C -0.172 4.172 21 C 0.105 3.895 22 F -0.112 7.112 23 C -0.215 4.215 24 C 0.104 3.896 25 F -0.114 7.114 26 C -0.147 4.147 27 C 0.030 3.970 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.100 0.900 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.489 -24.133 -4.056 25.592 hybrid contribution 0.749 1.383 -0.100 1.576 sum 8.239 -22.750 -4.156 24.550 Atomic orbital electron populations 1.69679 1.06976 1.29640 1.49265 1.26114 0.96534 1.02631 0.95782 0.84881 0.77934 0.76549 0.78713 1.19572 1.19588 1.19486 1.19725 0.92938 0.83545 1.50398 0.89654 1.41820 1.09605 1.04538 1.63386 1.20426 0.88112 0.85945 0.83562 1.90475 1.15250 1.87556 1.58059 1.20621 0.90931 0.82966 1.04266 1.44936 1.11066 1.03587 1.79165 1.15705 0.84671 0.80506 0.77658 1.90880 1.15215 1.84161 1.59727 1.47157 1.04936 1.06747 1.77372 1.21762 1.02070 0.78515 0.97564 1.20985 0.89770 1.04505 0.97784 1.19345 0.96584 0.92038 0.93160 1.21450 0.92822 1.03038 0.99912 1.17250 0.91520 0.91673 0.89023 1.91537 1.82576 1.75225 1.61887 1.21097 1.03147 0.98176 0.99031 1.17293 0.89981 0.88274 0.94004 1.91544 1.80419 1.59490 1.79923 1.19786 0.92879 1.00515 1.01559 1.20252 0.79839 0.99114 0.97804 0.91045 0.76634 0.88740 0.88828 0.75381 0.88407 0.88505 0.84939 0.89526 0.81190 0.82139 0.89996 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 41.85 29.55 68.60 2.03 43.87 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.34 -18.60 9.68 84.04 0.81 -17.78 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -28.07 5.29 -306.98 -1.62 -29.70 16 10 C 0.43 20.09 7.85 87.66 0.69 20.78 16 11 O -0.63 -32.61 15.24 -3.09 -0.05 -32.66 16 12 C 0.14 5.19 6.16 85.63 0.53 5.72 16 13 N -0.73 -24.71 5.44 -482.31 -2.62 -27.33 16 14 C 0.71 22.48 8.32 179.05 1.49 23.97 16 15 O -0.62 -22.78 15.84 -3.99 -0.06 -22.85 16 16 N -0.63 -14.52 2.94 -842.81 -2.48 -17.00 16 17 C 0.12 1.96 6.44 86.17 0.56 2.51 16 18 C -0.09 -1.07 5.87 29.74 0.17 -0.89 16 19 C -0.01 -0.16 5.76 -19.86 -0.11 -0.27 16 20 C -0.15 -1.93 9.57 22.42 0.21 -1.72 16 21 C 0.12 1.94 7.29 22.30 0.16 2.10 16 22 F -0.13 -2.20 17.27 44.97 0.78 -1.42 16 23 C -0.20 -3.30 10.01 22.30 0.22 -3.07 16 24 C 0.12 2.45 7.22 22.45 0.16 2.61 16 25 F -0.14 -3.10 16.60 44.97 0.75 -2.35 16 26 C -0.15 -2.73 5.82 -19.89 -0.12 -2.84 16 27 C 0.15 3.21 5.71 85.51 0.49 3.70 16 28 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 29 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 30 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.41 13.90 5.03 -92.71 -0.47 13.43 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.78 7.07 -2.38 -0.02 1.77 16 35 H 0.13 0.58 8.10 -2.39 -0.02 0.56 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.17 1.19 8.05 -2.91 -0.02 1.17 16 38 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.08 2.02 5.73 -2.39 -0.01 2.01 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -68.42 349.85 2.67 -65.75 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.06 Total: 37.27 kcal Atomic # 6 Polarization: 29.02 SS G_CDS: 5.74 Total: 34.76 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.44 Total: -122.38 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.11 Total: -55.50 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 1.52 Total: -3.77 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -68.42 2.67 -65.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348793413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.397 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds