Wall clock time and date at job start Tue Mar 31 2020 22:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99827 * 3 2 1 6 6 H 1.48506 * 109.47215 * 59.99585 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.88651 * 325.70653 * 14 13 11 16 16 C 1.55158 * 111.00358 * 89.58398 * 14 13 11 17 17 C 1.54320 * 102.94591 * 153.58016 * 16 14 13 18 18 N 1.47024 * 107.26771 * 337.80635 * 17 16 14 19 19 C 1.34781 * 125.64793 * 178.99462 * 18 17 16 20 20 O 1.21281 * 119.99754 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99875 * 359.97438 * 19 18 17 22 22 N 1.46504 * 109.46770 * 179.97438 * 21 19 18 23 23 C 1.34425 * 126.81899 * 124.71596 * 22 21 19 24 24 N 1.30829 * 108.07646 * 179.89132 * 23 22 21 25 25 C 1.33243 * 109.82934 * 0.37766 * 24 23 22 26 26 N 1.30717 * 108.94343 * 359.76540 * 25 24 23 27 27 C 1.47468 * 108.72700 * 358.97793 * 18 17 16 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.08999 * 110.72112 * 271.94563 * 16 14 13 33 33 H 1.09003 * 110.71785 * 35.21057 * 16 14 13 34 34 H 1.08996 * 109.88456 * 97.22386 * 17 16 14 35 35 H 1.08992 * 109.88351 * 218.39344 * 17 16 14 36 36 H 1.09001 * 109.46972 * 300.00094 * 21 19 18 37 37 H 1.08996 * 109.47083 * 60.00168 * 21 19 18 38 38 H 1.08008 * 125.96299 * 0.02636 * 23 22 21 39 39 H 1.07998 * 125.52732 * 179.72903 * 25 24 23 40 40 H 1.09005 * 110.34596 * 265.25693 * 27 18 17 41 41 H 1.08994 * 110.40836 * 142.91009 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 1 1.4065 -7.7838 0.5759 16 6 2.1264 -8.2325 -1.4460 17 6 2.2699 -9.7611 -1.2905 18 7 3.0354 -10.0046 -0.0591 19 6 3.3574 -11.2147 0.4394 20 8 3.9957 -11.2968 1.4673 21 6 2.9243 -12.4657 -0.2807 22 7 3.3947 -13.6411 0.4566 23 6 2.6455 -14.6614 0.9088 24 7 3.4374 -15.5104 1.5119 25 6 4.6923 -15.0644 1.4725 26 7 4.7171 -13.9227 0.8365 27 6 3.3932 -8.7057 0.5406 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.1327 -7.9736 -1.8114 33 1 2.8968 -7.8382 -2.1087 34 1 1.2843 -10.2198 -1.2110 35 1 2.8045 -10.1723 -2.1466 36 1 1.8365 -12.4889 -0.3464 37 1 3.3492 -12.4728 -1.2844 38 1 1.5766 -14.7637 0.7925 39 1 5.5498 -15.5647 1.8976 40 1 4.3905 -8.4027 0.2213 41 1 3.3428 -8.7622 1.6279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352747957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:39 Heat of formation + Delta-G solvation = 37.279877 kcal Electronic energy + Delta-G solvation = -25438.189848 eV Core-core repulsion = 21482.109166 eV Total energy + Delta-G solvation = -3956.080681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45420 -40.66001 -39.33999 -37.68958 -34.57222 -34.24994 -32.48190 -31.59721 -31.39881 -29.86767 -29.12793 -27.56359 -25.53794 -24.05431 -22.54855 -22.36992 -21.67435 -20.64855 -19.84148 -18.07986 -17.96235 -17.62461 -17.19368 -16.41352 -16.21534 -15.92570 -15.28937 -15.02314 -14.99194 -14.85365 -14.77530 -14.34599 -14.01308 -13.92257 -13.60819 -13.34125 -13.18438 -12.83027 -12.67907 -12.52892 -12.25064 -12.12089 -11.73697 -11.23730 -11.10976 -11.07577 -10.80758 -10.76692 -10.40448 -10.15558 -9.98605 -9.86589 -9.57406 -9.24958 -9.14376 -9.08606 -8.30908 -6.56701 -6.27260 -3.98333 1.18949 1.68894 1.99604 2.31039 2.63211 2.91003 2.95388 3.18024 3.24363 3.28561 3.58416 3.65666 3.92255 3.94558 4.09719 4.15141 4.27220 4.35169 4.46668 4.56926 4.74607 4.77207 4.83208 5.03813 5.06115 5.08421 5.30672 5.38355 5.53183 5.55471 5.69143 5.78430 5.79438 5.82188 6.04960 6.05660 6.29672 6.41930 6.85355 7.50070 7.54089 7.55226 7.69605 8.30096 8.43823 9.18556 10.80210 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.045011 B = 0.001617 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.917214 B =17315.723913 C =17559.162663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.730 5.730 14 C 0.137 3.863 15 H 0.107 0.893 16 C -0.145 4.145 17 C 0.096 3.904 18 N -0.616 5.616 19 C 0.517 3.483 20 O -0.508 6.508 21 C 0.117 3.883 22 N -0.373 5.373 23 C 0.256 3.744 24 N -0.544 5.544 25 C 0.194 3.806 26 N -0.291 5.291 27 C 0.104 3.896 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.076 0.924 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -26.943 -4.324 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.385 5.385 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.185 4.185 17 C -0.027 4.027 18 N -0.353 5.353 19 C 0.303 3.697 20 O -0.381 6.381 21 C -0.009 4.009 22 N -0.164 5.164 23 C -0.040 4.040 24 N -0.270 5.270 25 C -0.109 4.109 26 N -0.117 5.117 27 C -0.019 4.019 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.237 0.763 39 H 0.234 0.766 40 H 0.094 0.906 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.103 -27.121 -3.733 27.848 hybrid contribution 2.153 1.532 -0.187 2.649 sum 7.256 -25.588 -3.919 26.885 Atomic orbital electron populations 1.70017 1.05961 1.27426 1.46848 1.24993 0.95028 0.99063 0.94457 0.86113 0.79589 0.81832 0.77941 1.19606 1.20538 1.20536 1.22905 0.94959 0.91577 1.59005 0.90822 1.85392 1.04760 0.96408 1.96740 1.23541 1.06745 0.95079 1.05113 1.20353 0.86463 0.86213 0.74667 1.90706 1.15315 1.85492 1.47185 1.45858 1.10157 1.04439 1.78006 1.21928 0.97685 0.81328 0.96045 0.87550 1.23108 1.04658 0.92659 0.98029 1.22205 0.96160 0.97776 0.86531 1.48308 1.55598 1.05110 1.26237 1.20055 0.80664 0.83398 0.85576 1.90835 1.38147 1.85761 1.23352 1.21529 1.01945 0.81611 0.95820 1.50009 1.05942 1.17515 1.42973 1.26119 0.99868 0.84586 0.93461 1.70544 1.01984 1.30724 1.23795 1.26052 0.95807 0.91230 0.97795 1.78201 0.96609 1.17311 1.19625 1.22398 0.98152 0.81655 0.99717 0.92186 0.89040 0.89075 0.76440 0.88709 0.89760 0.90538 0.90641 0.84969 0.86200 0.76342 0.76636 0.90560 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 11 C 0.54 8.93 7.85 -10.98 -0.09 8.84 16 12 O -0.51 -10.55 15.55 5.56 0.09 -10.46 16 13 N -0.73 -8.14 5.22 -51.73 -0.27 -8.41 16 14 C 0.14 1.29 3.37 -65.78 -0.22 1.06 16 15 H 0.11 1.21 7.63 -51.93 -0.40 0.81 16 16 C -0.15 -1.03 6.65 -24.90 -0.17 -1.20 16 17 C 0.10 0.44 6.49 -3.06 -0.02 0.42 16 18 N -0.62 -4.50 3.33 -170.49 -0.57 -5.07 16 19 C 0.52 4.60 7.89 -10.98 -0.09 4.52 16 20 O -0.51 -7.09 16.00 5.56 0.09 -7.00 16 21 C 0.12 0.57 6.22 -5.19 -0.03 0.54 16 22 N -0.37 -3.06 3.41 -63.81 -0.22 -3.27 16 23 C 0.26 1.77 12.63 -90.66 -1.14 0.63 16 24 N -0.54 -5.24 11.19 -15.83 -0.18 -5.41 16 25 C 0.19 1.86 13.03 -91.81 -1.20 0.66 16 26 N -0.29 -3.26 11.82 29.29 0.35 -2.91 16 27 C 0.10 0.87 6.54 -2.50 -0.02 0.85 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 31 H 0.40 3.39 8.54 -40.82 -0.35 3.04 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.13 0.10 8.09 -51.93 -0.42 -0.32 16 37 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.22 0.40 8.06 -52.48 -0.42 -0.02 16 39 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.08 0.58 8.00 -51.93 -0.42 0.17 16 41 H 0.09 0.86 8.04 -51.93 -0.42 0.45 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -40.59 372.49 -9.49 -50.08 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.35 Total: -1.53 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.55 Total: 1.07 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.15 Total: -49.95 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.18 Total: -17.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.59 -9.49 -50.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352747957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.360 kcal (2) G-P(sol) polarization free energy of solvation -40.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds