Wall clock time and date at job start Tue Mar 31 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99827 * 3 2 1 6 6 H 1.48506 * 109.47215 * 59.99585 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.88651 * 325.70653 * 14 13 11 16 16 C 1.55158 * 111.00358 * 89.58398 * 14 13 11 17 17 C 1.54320 * 102.94591 * 153.58016 * 16 14 13 18 18 N 1.47024 * 107.26771 * 337.80635 * 17 16 14 19 19 C 1.34781 * 125.64793 * 178.99462 * 18 17 16 20 20 O 1.21281 * 119.99754 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99875 * 359.97438 * 19 18 17 22 22 N 1.46504 * 109.46770 * 179.97438 * 21 19 18 23 23 C 1.34425 * 126.81899 * 124.71596 * 22 21 19 24 24 N 1.30829 * 108.07646 * 179.89132 * 23 22 21 25 25 C 1.33243 * 109.82934 * 0.37766 * 24 23 22 26 26 N 1.30717 * 108.94343 * 359.76540 * 25 24 23 27 27 C 1.47468 * 108.72700 * 358.97793 * 18 17 16 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.08999 * 110.72112 * 271.94563 * 16 14 13 33 33 H 1.09003 * 110.71785 * 35.21057 * 16 14 13 34 34 H 1.08996 * 109.88456 * 97.22386 * 17 16 14 35 35 H 1.08992 * 109.88351 * 218.39344 * 17 16 14 36 36 H 1.09001 * 109.46972 * 300.00094 * 21 19 18 37 37 H 1.08996 * 109.47083 * 60.00168 * 21 19 18 38 38 H 1.08008 * 125.96299 * 0.02636 * 23 22 21 39 39 H 1.07998 * 125.52732 * 179.72903 * 25 24 23 40 40 H 1.09005 * 110.34596 * 265.25693 * 27 18 17 41 41 H 1.08994 * 110.40836 * 142.91009 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 1 1.4065 -7.7838 0.5759 16 6 2.1264 -8.2325 -1.4460 17 6 2.2699 -9.7611 -1.2905 18 7 3.0354 -10.0046 -0.0591 19 6 3.3574 -11.2147 0.4394 20 8 3.9957 -11.2968 1.4673 21 6 2.9243 -12.4657 -0.2807 22 7 3.3947 -13.6411 0.4566 23 6 2.6455 -14.6614 0.9088 24 7 3.4374 -15.5104 1.5119 25 6 4.6923 -15.0644 1.4725 26 7 4.7171 -13.9227 0.8365 27 6 3.3932 -8.7057 0.5406 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.1327 -7.9736 -1.8114 33 1 2.8968 -7.8382 -2.1087 34 1 1.2843 -10.2198 -1.2110 35 1 2.8045 -10.1723 -2.1466 36 1 1.8365 -12.4889 -0.3464 37 1 3.3492 -12.4728 -1.2844 38 1 1.5766 -14.7637 0.7925 39 1 5.5498 -15.5647 1.8976 40 1 4.3905 -8.4027 0.2213 41 1 3.3428 -8.7622 1.6279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352747957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:38 Heat of formation + Delta-G solvation = 7.610267 kcal Electronic energy + Delta-G solvation = -25439.476419 eV Core-core repulsion = 21482.109166 eV Total energy + Delta-G solvation = -3957.367252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.01274 -41.40496 -40.45761 -38.53976 -35.42114 -34.98205 -34.58371 -32.37312 -32.14444 -30.72858 -30.01643 -28.31603 -27.62610 -24.69012 -23.12682 -22.91644 -22.52929 -21.72445 -20.47677 -19.85414 -18.58744 -18.29670 -18.08406 -17.55868 -16.94271 -16.87830 -16.67722 -16.38467 -16.08937 -15.81215 -15.50305 -15.23411 -14.88740 -14.80678 -14.60588 -14.41446 -14.06944 -13.84285 -13.67988 -13.50197 -13.16008 -12.95363 -12.89048 -12.79481 -12.68590 -12.55502 -11.87367 -11.71071 -11.43767 -11.15986 -11.02969 -10.99590 -10.78779 -10.57453 -10.27256 -10.18390 -9.81540 -8.65841 -8.35231 -6.12473 0.65018 1.20153 1.29530 1.39833 1.41081 1.46423 1.56484 1.58105 1.78709 2.03635 2.26412 2.34597 2.99362 3.13137 3.31287 3.46364 3.54055 3.59207 3.69978 3.92843 3.97210 4.06638 4.10594 4.17946 4.23830 4.31379 4.38516 4.52610 4.56020 4.73871 4.78566 4.94338 5.09021 5.11558 5.24180 5.42470 5.43374 5.46606 5.85921 6.19937 6.28904 6.44885 6.93062 7.06885 7.12328 7.20186 8.74059 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.045011 B = 0.001617 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.917214 B =17315.723913 C =17559.162663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.132 4.132 11 C 0.541 3.459 12 O -0.559 6.559 13 N -0.705 5.705 14 C 0.134 3.866 15 H 0.085 0.915 16 C -0.141 4.141 17 C 0.099 3.901 18 N -0.612 5.612 19 C 0.512 3.488 20 O -0.569 6.569 21 C 0.117 3.883 22 N -0.379 5.379 23 C 0.265 3.735 24 N -0.578 5.578 25 C 0.185 3.815 26 N -0.338 5.338 27 C 0.110 3.890 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.418 0.582 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.182 0.818 37 H 0.147 0.853 38 H 0.268 0.732 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -27.895 -5.926 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.283 4.283 11 C 0.327 3.673 12 O -0.436 6.436 13 N -0.359 5.359 14 C 0.028 3.972 15 H 0.103 0.897 16 C -0.180 4.180 17 C -0.022 4.022 18 N -0.347 5.347 19 C 0.300 3.700 20 O -0.447 6.447 21 C -0.007 4.007 22 N -0.170 5.170 23 C -0.031 4.031 24 N -0.306 5.306 25 C -0.118 4.118 26 N -0.165 5.165 27 C -0.014 4.014 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.255 0.745 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.200 0.800 37 H 0.165 0.835 38 H 0.283 0.717 39 H 0.250 0.750 40 H 0.105 0.895 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.031 -28.094 -5.378 29.233 hybrid contribution 1.881 1.742 0.310 2.582 sum 7.912 -26.352 -5.068 27.976 Atomic orbital electron populations 1.70174 1.07908 1.28538 1.48078 1.26086 0.95933 1.03219 0.93776 0.84935 0.78625 0.76523 0.78051 1.18115 1.19888 1.20095 1.23247 0.95371 0.92118 1.58726 0.89944 1.85531 1.10385 0.99107 1.97048 1.23387 1.03653 0.94366 1.06902 1.19967 0.86166 0.86419 0.74712 1.90697 1.17207 1.85934 1.49764 1.45550 1.10406 1.04218 1.75755 1.21985 0.97081 0.80159 0.97994 0.89730 1.23064 1.04423 0.94646 0.95867 1.22416 0.97733 0.95902 0.86181 1.48366 1.55260 1.04330 1.26761 1.20810 0.79602 0.84605 0.84947 1.90816 1.41066 1.86639 1.26199 1.21955 1.04840 0.78340 0.95592 1.50173 1.05104 1.18550 1.43186 1.27046 1.01360 0.83355 0.91330 1.70538 1.02347 1.32302 1.25380 1.26481 0.96682 0.91073 0.97522 1.78099 0.99057 1.18188 1.21108 1.22224 0.98214 0.82318 0.98681 0.91996 0.87392 0.86937 0.74484 0.89620 0.88997 0.87853 0.87451 0.80042 0.83533 0.71660 0.75030 0.89461 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.85 13.22 21.65 0.29 -54.56 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.44 9.50 67.96 0.65 -29.79 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 10 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 11 C 0.54 17.78 7.85 87.66 0.69 18.47 16 12 O -0.56 -23.40 15.55 -3.01 -0.05 -23.44 16 13 N -0.71 -14.76 5.22 -435.97 -2.27 -17.03 16 14 C 0.13 2.35 3.37 46.39 0.16 2.51 16 15 H 0.08 1.92 7.63 -2.39 -0.02 1.90 16 16 C -0.14 -1.64 6.65 31.78 0.21 -1.43 16 17 C 0.10 0.50 6.49 86.73 0.56 1.07 16 18 N -0.61 -7.41 3.33 -811.69 -2.70 -10.11 16 19 C 0.51 8.11 7.89 87.66 0.69 8.80 16 20 O -0.57 -15.89 16.00 -3.03 -0.05 -15.94 16 21 C 0.12 0.72 6.22 85.63 0.53 1.25 16 22 N -0.38 -5.41 3.41 -355.80 -1.21 -6.62 16 23 C 0.26 3.01 12.63 180.36 2.28 5.29 16 24 N -0.58 -10.59 11.19 -204.00 -2.28 -12.87 16 25 C 0.19 3.55 13.03 180.76 2.36 5.91 16 26 N -0.34 -7.44 11.82 -61.24 -0.72 -8.16 16 27 C 0.11 1.69 6.54 86.85 0.57 2.26 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 30 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.42 6.11 8.54 -92.71 -0.79 5.31 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.18 -0.77 8.09 -2.39 -0.02 -0.79 16 37 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.27 -0.16 8.06 -2.91 -0.02 -0.18 16 39 H 0.23 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.09 1.17 8.00 -2.38 -0.02 1.15 16 41 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 Total: -1.00 -94.84 372.49 1.73 -93.11 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.28 Total: 8.65 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 9.59 Total: 11.21 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -8.91 Total: -109.35 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.10 Total: -39.38 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -94.84 1.73 -93.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352747957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.719 kcal (2) G-P(sol) polarization free energy of solvation -94.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds