Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1 6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1 7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.08995 * 110.88814 * 30.83840 * 14 13 11 16 16 C 1.55157 * 111.00287 * 266.91670 * 14 13 11 17 17 C 1.54321 * 102.94194 * 206.42410 * 16 14 13 18 18 N 1.47021 * 107.27247 * 22.19542 * 17 16 14 19 19 C 1.34775 * 125.64889 * 181.09182 * 18 17 16 20 20 O 1.21281 * 120.00018 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.00102 * 359.96302 * 19 18 17 22 22 N 1.46500 * 109.47219 * 179.97438 * 21 19 18 23 23 C 1.34430 * 126.82347 * 124.99703 * 22 21 19 24 24 N 1.30831 * 108.07336 * 179.97438 * 23 22 21 25 25 C 1.33236 * 109.83284 * 359.97438 * 24 23 22 26 26 N 1.30710 * 108.94447 * 359.75628 * 25 24 23 27 27 C 1.47422 * 108.70493 * 1.05699 * 18 17 16 28 28 H 0.97000 * 120.00636 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 30 30 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 31 31 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 32 32 H 1.09003 * 110.72040 * 324.78895 * 16 14 13 33 33 H 1.08995 * 110.71997 * 88.06202 * 16 14 13 34 34 H 1.08998 * 109.88528 * 262.77566 * 17 16 14 35 35 H 1.09004 * 110.00979 * 141.67873 * 17 16 14 36 36 H 1.09008 * 109.46871 * 299.99528 * 21 19 18 37 37 H 1.09000 * 109.47329 * 59.99554 * 21 19 18 38 38 H 1.07994 * 125.96216 * 359.97438 * 23 22 21 39 39 H 1.08004 * 125.52920 * 179.97438 * 25 24 23 40 40 H 1.09002 * 110.36871 * 217.03583 * 27 18 17 41 41 H 1.08996 * 110.46009 * 94.75623 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3440 -2.2962 -0.0006 13 7 6.0457 -4.4947 -0.0010 14 6 7.4907 -4.7357 0.0050 15 1 8.0155 -3.9384 0.5313 16 6 8.0330 -4.9007 -1.4393 17 6 9.2860 -5.7791 -1.2397 18 7 9.1210 -6.4917 0.0357 19 6 10.0116 -7.3444 0.5800 20 8 9.7696 -7.8775 1.6421 21 6 11.3079 -7.6356 -0.1313 22 7 12.0961 -8.5844 0.6590 23 6 12.5920 -9.7627 0.2433 24 7 13.2346 -10.3083 1.2438 25 6 13.1717 -9.5115 2.3098 26 7 12.4895 -8.4407 1.9995 27 6 7.8205 -6.1184 0.6210 28 1 -0.4851 0.8400 0.0004 29 1 3.6440 -3.4314 -0.8903 30 1 3.6433 -3.4318 0.8896 31 1 5.4291 -5.2434 -0.0011 32 1 7.3028 -5.4080 -2.0698 33 1 8.3036 -3.9334 -1.8625 34 1 10.1764 -5.1516 -1.2013 35 1 9.3729 -6.4960 -2.0562 36 1 11.0964 -8.0653 -1.1105 37 1 11.8706 -6.7102 -0.2545 38 1 12.4795 -10.1852 -0.7442 39 1 13.6157 -9.7156 3.2730 40 1 7.9006 -6.0413 1.7053 41 1 7.0569 -6.8468 0.3485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352747958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = 7.760225 kcal Electronic energy + Delta-G solvation = -25489.823298 eV Core-core repulsion = 21532.462549 eV Total energy + Delta-G solvation = -3957.360749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.01427 -41.41914 -40.49357 -38.55686 -35.44733 -34.98923 -34.67051 -32.40267 -32.15168 -30.76677 -30.03477 -28.32372 -27.82109 -24.70416 -23.12651 -22.91258 -22.55381 -21.77462 -20.48461 -19.91324 -18.59187 -18.37303 -18.04366 -17.69202 -17.10361 -16.70541 -16.60448 -16.43400 -16.36497 -15.75477 -15.48556 -15.13342 -14.93470 -14.90781 -14.76836 -14.60439 -14.03283 -13.88092 -13.75499 -13.50408 -13.34654 -13.03689 -12.94649 -12.81395 -12.71368 -12.56013 -11.87844 -11.85879 -11.44343 -11.17021 -11.06528 -11.01856 -10.79237 -10.57733 -10.53664 -10.21402 -9.81244 -8.99271 -8.51537 -6.22281 0.65578 0.97576 1.24005 1.31326 1.38861 1.46508 1.52016 1.54333 1.78966 2.03567 2.23974 2.29655 2.71341 2.86926 3.14117 3.44273 3.53921 3.60977 3.68215 3.83668 3.95454 4.06626 4.10414 4.16703 4.24436 4.24935 4.38472 4.48242 4.56343 4.73598 4.78150 4.94570 5.08667 5.11403 5.23945 5.41039 5.45983 5.70491 5.87033 6.11635 6.28762 6.40925 6.93212 6.93730 7.12312 7.14509 8.60747 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.042681 B = 0.001671 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.864949 B =16753.027179 C =16816.541725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.113 4.113 11 C 0.542 3.458 12 O -0.558 6.558 13 N -0.703 5.703 14 C 0.133 3.867 15 H 0.083 0.917 16 C -0.139 4.139 17 C 0.098 3.902 18 N -0.612 5.612 19 C 0.512 3.488 20 O -0.570 6.570 21 C 0.117 3.883 22 N -0.379 5.379 23 C 0.267 3.733 24 N -0.578 5.578 25 C 0.185 3.815 26 N -0.341 5.341 27 C 0.108 3.892 28 H 0.277 0.723 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.419 0.581 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.188 0.812 37 H 0.142 0.858 38 H 0.271 0.729 39 H 0.232 0.768 40 H 0.063 0.937 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.642 -20.076 -7.816 33.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.264 4.264 11 C 0.328 3.672 12 O -0.435 6.435 13 N -0.357 5.357 14 C 0.026 3.974 15 H 0.101 0.899 16 C -0.178 4.178 17 C -0.024 4.024 18 N -0.347 5.347 19 C 0.300 3.700 20 O -0.448 6.448 21 C -0.007 4.007 22 N -0.171 5.171 23 C -0.029 4.029 24 N -0.306 5.306 25 C -0.117 4.117 26 N -0.168 5.168 27 C -0.016 4.016 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.257 0.743 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.205 0.795 37 H 0.160 0.840 38 H 0.286 0.714 39 H 0.248 0.752 40 H 0.081 0.919 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 26.662 -18.448 -6.772 33.122 hybrid contribution -1.879 -0.451 0.325 1.960 sum 24.783 -18.899 -6.447 31.826 Atomic orbital electron populations 1.70014 1.07339 1.29009 1.49131 1.25566 0.95252 1.02267 0.92904 0.85867 0.80648 0.79600 0.80256 1.18529 1.18577 1.16069 1.22475 0.90361 0.96671 1.58250 0.91931 1.84702 1.06305 1.06191 1.97598 1.23276 0.95818 0.99624 1.07639 1.19891 0.89337 0.83174 0.74832 1.90702 1.59193 1.43722 1.49893 1.45513 1.07541 1.07125 1.75499 1.22002 0.81002 0.96440 0.97928 0.89864 1.23064 0.97717 1.01363 0.95670 1.22435 0.99087 0.95979 0.84852 1.48350 1.18181 1.44324 1.23870 1.20816 0.85469 0.78438 0.85285 1.90818 1.77931 1.52045 1.23987 1.21956 0.87904 0.96210 0.94637 1.50167 1.40564 1.17654 1.08689 1.27078 0.91077 0.83176 1.01579 1.70533 1.26581 1.32887 1.00558 1.26460 0.96864 0.88224 1.00192 1.78119 1.19291 1.25301 0.94061 1.22238 0.86067 0.94884 0.98409 0.91403 0.86418 0.86966 0.74318 0.88409 0.89615 0.88823 0.86503 0.79511 0.84048 0.71382 0.75157 0.91887 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.07 13.97 21.65 0.30 -54.77 16 2 C 0.05 2.63 5.50 84.86 0.47 3.09 16 3 Si 0.91 44.11 27.74 68.60 1.90 46.01 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.24 -11.39 6.74 99.48 0.67 -10.72 16 7 C -0.53 -30.11 10.04 67.96 0.68 -29.42 16 8 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 9 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 10 C -0.11 -3.89 6.16 71.24 0.44 -3.45 16 11 C 0.54 16.42 7.85 87.66 0.69 17.11 16 12 O -0.56 -21.57 15.50 -3.04 -0.05 -21.61 16 13 N -0.70 -13.38 5.20 -435.96 -2.27 -15.64 16 14 C 0.13 2.15 3.43 46.39 0.16 2.31 16 15 H 0.08 1.84 7.54 -2.39 -0.02 1.82 16 16 C -0.14 -1.33 6.65 31.78 0.21 -1.12 16 17 C 0.10 0.36 6.49 86.73 0.56 0.92 16 18 N -0.61 -6.83 3.33 -811.80 -2.70 -9.53 16 19 C 0.51 7.77 7.89 87.66 0.69 8.47 16 20 O -0.57 -15.69 16.01 -3.03 -0.05 -15.73 16 21 C 0.12 0.64 6.22 85.63 0.53 1.17 16 22 N -0.38 -5.23 3.40 -355.80 -1.21 -6.44 16 23 C 0.27 2.75 12.63 180.36 2.28 5.03 16 24 N -0.58 -10.23 11.19 -204.01 -2.28 -12.51 16 25 C 0.19 3.56 13.03 180.77 2.36 5.91 16 26 N -0.34 -7.60 11.84 -61.25 -0.72 -8.33 16 27 C 0.11 1.56 6.55 86.86 0.57 2.13 16 28 H 0.28 15.38 8.31 -92.71 -0.77 14.60 16 29 H 0.12 3.64 8.14 -2.40 -0.02 3.62 16 30 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.42 5.36 8.56 -92.71 -0.79 4.56 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.12 -0.39 8.14 -2.38 -0.02 -0.41 16 36 H 0.19 -1.16 8.09 -2.38 -0.02 -1.18 16 37 H 0.14 0.21 8.14 -2.39 -0.02 0.20 16 38 H 0.27 -0.62 8.06 -2.91 -0.02 -0.64 16 39 H 0.23 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.06 1.25 8.04 -2.39 -0.02 1.24 16 41 H 0.09 1.06 8.00 -2.39 -0.02 1.04 16 Total: -1.00 -94.10 369.76 1.75 -92.35 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 0.24 Total: 3.55 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 9.63 Total: 12.14 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -8.88 Total: -107.22 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.10 Total: -37.35 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.50 kcal Total: -94.10 1.75 -92.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352747958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.115 kcal (2) G-P(sol) polarization free energy of solvation -94.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds