Wall clock time and date at job start Tue Mar 31 2020 22:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33320 * 126.81113 * 2 1 4 4 N 1.28514 * 109.43989 * 179.97438 * 3 2 1 5 5 N 1.28712 * 110.63811 * 359.71488 * 4 3 2 6 6 H 0.97000 * 126.03515 * 180.29814 * 5 4 3 7 7 C 1.37008 * 126.81761 * 179.97438 * 2 1 3 8 8 C 1.47237 * 127.18814 * 0.02562 * 7 2 1 9 9 O 1.21611 * 119.99903 * 359.97438 * 8 7 2 10 10 N 1.34776 * 119.99673 * 180.02562 * 8 7 2 11 11 C 1.46504 * 119.99431 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.64467 * 31.85593 * 11 10 8 13 13 C 1.55162 * 110.71544 * 154.99890 * 11 10 8 14 14 C 1.54905 * 101.57925 * 153.86402 * 13 11 10 15 15 N 1.47427 * 104.83458 * 322.98985 * 14 13 11 16 16 C 1.34778 * 125.64870 * 204.09699 * 15 14 13 17 17 O 1.21278 * 119.99748 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00209 * 0.02562 * 16 15 14 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00123 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00074 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99873 * 24 22 20 28 28 C 1.47028 * 108.70223 * 24.35487 * 15 14 13 29 29 H 1.09002 * 109.47027 * 270.02144 * 1 2 3 30 30 H 1.08994 * 109.47708 * 30.02603 * 1 2 3 31 31 H 1.09008 * 109.46764 * 150.02459 * 1 2 3 32 32 H 0.96994 * 120.00315 * 359.97438 * 10 8 7 33 33 H 1.08995 * 111.00381 * 35.78953 * 13 11 10 34 34 H 1.08993 * 111.03654 * 271.94901 * 13 11 10 35 35 H 1.08999 * 110.36854 * 204.15285 * 14 13 11 36 36 H 1.09007 * 110.37095 * 81.82455 * 14 13 11 37 37 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 38 38 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 39 39 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 40 40 H 1.08993 * 109.87909 * 118.13301 * 28 15 14 41 41 H 1.09002 * 109.87892 * 239.29904 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6837 0.0005 5 7 3.6057 -0.6013 0.0069 6 1 4.4213 -1.1263 0.0127 7 6 2.3280 -1.0968 0.0005 8 6 1.9223 -2.5122 0.0006 9 8 0.7424 -2.8065 0.0007 10 7 2.8587 -3.4815 0.0016 11 6 2.4550 -4.8898 0.0023 12 1 1.5165 -5.0208 -0.5364 13 6 3.5684 -5.7803 -0.6100 14 6 3.2917 -7.1407 0.0773 15 7 2.8755 -6.7932 1.4482 16 6 2.9699 -7.5976 2.5255 17 8 2.5943 -7.2054 3.6099 18 6 3.5422 -8.9844 2.3826 19 16 3.5345 -9.8093 3.9936 20 6 4.2340 -11.3630 3.5451 21 1 4.5183 -11.5517 2.5204 22 6 4.4255 -12.3423 4.5100 23 7 4.0795 -12.1122 5.7590 24 14 5.1743 -13.9867 4.0360 25 1 6.6514 -13.9154 4.1713 26 1 4.6459 -15.0475 4.9308 27 1 4.8208 -14.3044 2.6291 28 6 2.3347 -5.4260 1.4445 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 3.7998 -3.2468 0.0019 33 1 4.5574 -5.4043 -0.3483 34 1 3.4561 -5.8589 -1.6913 35 1 4.1976 -7.7465 0.0980 36 1 2.4914 -7.6709 -0.4391 37 1 4.5653 -8.9189 2.0124 38 1 2.9372 -9.5563 1.6790 39 1 4.2130 -12.7967 6.4331 40 1 1.2887 -5.4404 1.7507 41 1 2.9127 -4.7969 2.1214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353358581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:33 Heat of formation + Delta-G solvation = 28.440881 kcal Electronic energy + Delta-G solvation = -25830.002481 eV Core-core repulsion = 21873.538512 eV Total energy + Delta-G solvation = -3956.463969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.91207 -40.62248 -39.46079 -37.45245 -35.14554 -34.20292 -32.93869 -32.47575 -31.17337 -29.86333 -28.68472 -27.74785 -25.55339 -24.91299 -23.74267 -22.81872 -21.48341 -21.26047 -19.68116 -19.36843 -17.84944 -17.30620 -17.12737 -16.98909 -16.59072 -15.98283 -15.35250 -14.99356 -14.84820 -14.79910 -14.28170 -14.18106 -13.97933 -13.67179 -13.48946 -13.15899 -13.03269 -12.67755 -12.60879 -12.40553 -12.34012 -12.12836 -11.90136 -11.68866 -11.32902 -11.10506 -11.09061 -11.06972 -10.81406 -10.71512 -10.00131 -9.86830 -9.74091 -9.48900 -9.11281 -8.66773 -8.29314 -6.56105 -6.26237 -3.97605 0.30667 1.74291 1.84121 2.19655 2.45986 2.84882 2.95941 3.18594 3.21795 3.26661 3.52761 3.70042 3.86698 4.04806 4.12049 4.16643 4.29944 4.49582 4.50895 4.75157 4.91815 4.95372 5.08948 5.18960 5.25614 5.28345 5.31644 5.35052 5.46160 5.51437 5.53976 5.65147 5.79152 5.82388 5.85038 6.00380 6.04757 6.24899 6.64038 7.36554 7.50183 7.54920 7.72869 8.30274 8.44174 9.18924 10.81157 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030714 B = 0.001856 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.432254 B =15083.081828 C =15241.619154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 N -0.269 5.269 4 N -0.040 5.040 5 N -0.375 5.375 6 H 0.451 0.549 7 C -0.076 4.076 8 C 0.600 3.400 9 O -0.502 6.502 10 N -0.716 5.716 11 C 0.135 3.865 12 H 0.115 0.885 13 C -0.139 4.139 14 C 0.102 3.898 15 N -0.627 5.627 16 C 0.548 3.452 17 O -0.511 6.511 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.099 3.901 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.398 0.602 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 20.353 -18.425 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 N -0.135 5.135 4 N -0.021 5.021 5 N -0.102 5.102 6 H 0.297 0.703 7 C -0.210 4.210 8 C 0.383 3.617 9 O -0.374 6.374 10 N -0.368 5.368 11 C 0.030 3.970 12 H 0.133 0.867 13 C -0.177 4.177 14 C -0.021 4.021 15 N -0.365 5.365 16 C 0.337 3.663 17 O -0.385 6.385 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.026 4.026 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.232 0.768 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.529 21.946 -16.535 27.521 hybrid contribution 1.640 -2.691 -1.504 3.491 sum 0.111 19.256 -18.039 26.386 Atomic orbital electron populations 1.20370 0.84575 1.04596 1.04158 1.22412 0.98779 0.86846 0.99246 1.75004 0.95117 1.25902 1.17518 1.78229 1.16094 0.92113 1.15702 1.45473 1.08741 1.07083 1.48942 0.70264 1.22014 0.85125 0.96301 1.17532 1.16708 0.86020 0.82161 0.76761 1.90880 1.16312 1.81738 1.48507 1.45796 1.09152 1.06120 1.75725 1.22101 1.00041 0.78555 0.96288 0.86696 1.23108 0.98581 0.94947 1.01106 1.22278 1.01184 0.96352 0.82318 1.48451 1.64731 1.14830 1.08526 1.20086 0.77841 0.86035 0.82332 1.90726 1.47402 1.74882 1.25466 1.23507 1.03116 0.94758 1.08319 1.85450 1.82630 1.12754 1.02531 1.22846 1.48008 0.99921 0.97633 0.90899 1.25005 0.95247 0.98885 0.94470 1.70019 1.44583 1.34552 1.01029 0.86158 0.79172 0.81613 0.78496 1.20272 1.20712 1.19675 1.22214 1.00427 0.83912 0.96033 0.89609 0.90077 0.88637 0.76802 0.89845 0.88762 0.89541 0.90666 0.89267 0.89147 0.92131 0.90540 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.93 36.00 0.36 -0.20 16 2 C 0.07 0.60 7.29 -82.39 -0.60 0.00 16 3 N -0.27 -2.77 12.35 33.51 0.41 -2.36 16 4 N -0.04 -0.35 13.35 60.35 0.81 0.45 16 5 N -0.37 -2.09 6.97 33.31 0.23 -1.86 16 6 H 0.45 0.59 8.32 -190.33 -1.58 -0.99 16 7 C -0.08 -0.57 7.17 -82.33 -0.59 -1.16 16 8 C 0.60 4.68 7.81 -12.60 -0.10 4.58 16 9 O -0.50 -5.45 14.63 5.27 0.08 -5.37 16 10 N -0.72 -3.81 5.10 -53.16 -0.27 -4.08 16 11 C 0.14 0.93 3.31 -66.09 -0.22 0.71 16 12 H 0.12 0.86 7.55 -51.93 -0.39 0.47 16 13 C -0.14 -0.69 6.72 -24.58 -0.17 -0.86 16 14 C 0.10 0.85 6.69 -2.53 -0.02 0.83 16 15 N -0.63 -8.11 3.33 -170.51 -0.57 -8.68 16 16 C 0.55 10.11 7.87 -10.99 -0.09 10.02 16 17 O -0.51 -11.65 16.19 5.56 0.09 -11.56 16 18 C -0.15 -2.86 5.16 36.00 0.19 -2.67 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 24 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.10 1.09 6.63 -3.06 -0.02 1.07 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.72 6.61 -51.92 -0.34 0.37 16 32 H 0.40 0.89 7.83 -40.82 -0.32 0.57 16 33 H 0.08 0.33 8.01 -51.93 -0.42 -0.09 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.70 7.48 -51.93 -0.39 0.31 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.58 7.85 -51.92 -0.41 1.17 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -38.20 366.79 -7.60 -45.80 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -6.35 Total: -4.57 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.06 Total: -0.37 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 1.35 Total: -41.61 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.17 Total: -16.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.20 -7.60 -45.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353358581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.241 kcal (2) G-P(sol) polarization free energy of solvation -38.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds