Wall clock time and date at job start Tue Mar 31 2020 22:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33320 * 126.81113 * 2 1 4 4 N 1.28514 * 109.43989 * 179.97438 * 3 2 1 5 5 N 1.28712 * 110.63811 * 359.71488 * 4 3 2 6 6 H 0.97000 * 126.03515 * 180.29814 * 5 4 3 7 7 C 1.37008 * 126.81761 * 179.97438 * 2 1 3 8 8 C 1.47237 * 127.18814 * 0.02562 * 7 2 1 9 9 O 1.21611 * 119.99903 * 359.97438 * 8 7 2 10 10 N 1.34776 * 119.99673 * 180.02562 * 8 7 2 11 11 C 1.46504 * 119.99431 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.64467 * 31.85593 * 11 10 8 13 13 C 1.55162 * 110.71544 * 154.99890 * 11 10 8 14 14 C 1.54905 * 101.57925 * 153.86402 * 13 11 10 15 15 N 1.47427 * 104.83458 * 322.98985 * 14 13 11 16 16 C 1.34778 * 125.64870 * 204.09699 * 15 14 13 17 17 O 1.21278 * 119.99748 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00209 * 0.02562 * 16 15 14 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00123 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00074 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99873 * 24 22 20 28 28 C 1.47028 * 108.70223 * 24.35487 * 15 14 13 29 29 H 1.09002 * 109.47027 * 270.02144 * 1 2 3 30 30 H 1.08994 * 109.47708 * 30.02603 * 1 2 3 31 31 H 1.09008 * 109.46764 * 150.02459 * 1 2 3 32 32 H 0.96994 * 120.00315 * 359.97438 * 10 8 7 33 33 H 1.08995 * 111.00381 * 35.78953 * 13 11 10 34 34 H 1.08993 * 111.03654 * 271.94901 * 13 11 10 35 35 H 1.08999 * 110.36854 * 204.15285 * 14 13 11 36 36 H 1.09007 * 110.37095 * 81.82455 * 14 13 11 37 37 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 38 38 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 39 39 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 40 40 H 1.08993 * 109.87909 * 118.13301 * 28 15 14 41 41 H 1.09002 * 109.87892 * 239.29904 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6837 0.0005 5 7 3.6057 -0.6013 0.0069 6 1 4.4213 -1.1263 0.0127 7 6 2.3280 -1.0968 0.0005 8 6 1.9223 -2.5122 0.0006 9 8 0.7424 -2.8065 0.0007 10 7 2.8587 -3.4815 0.0016 11 6 2.4550 -4.8898 0.0023 12 1 1.5165 -5.0208 -0.5364 13 6 3.5684 -5.7803 -0.6100 14 6 3.2917 -7.1407 0.0773 15 7 2.8755 -6.7932 1.4482 16 6 2.9699 -7.5976 2.5255 17 8 2.5943 -7.2054 3.6099 18 6 3.5422 -8.9844 2.3826 19 16 3.5345 -9.8093 3.9936 20 6 4.2340 -11.3630 3.5451 21 1 4.5183 -11.5517 2.5204 22 6 4.4255 -12.3423 4.5100 23 7 4.0795 -12.1122 5.7590 24 14 5.1743 -13.9867 4.0360 25 1 6.6514 -13.9154 4.1713 26 1 4.6459 -15.0475 4.9308 27 1 4.8208 -14.3044 2.6291 28 6 2.3347 -5.4260 1.4445 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 3.7998 -3.2468 0.0019 33 1 4.5574 -5.4043 -0.3483 34 1 3.4561 -5.8589 -1.6913 35 1 4.1976 -7.7465 0.0980 36 1 2.4914 -7.6709 -0.4391 37 1 4.5653 -8.9189 2.0124 38 1 2.9372 -9.5563 1.6790 39 1 4.2130 -12.7967 6.4331 40 1 1.2887 -5.4404 1.7507 41 1 2.9127 -4.7969 2.1214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353358581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:32 Heat of formation + Delta-G solvation = -2.371064 kcal Electronic energy + Delta-G solvation = -25831.338587 eV Core-core repulsion = 21873.538512 eV Total energy + Delta-G solvation = -3957.800075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.52863 -41.43925 -40.48554 -38.52247 -35.87677 -34.88460 -34.58792 -33.60153 -32.18913 -30.90002 -29.51313 -28.57404 -27.65184 -25.63779 -24.59085 -23.45217 -22.13736 -21.89173 -20.75513 -20.16475 -19.57917 -18.26680 -17.89208 -17.66737 -17.59854 -16.92474 -16.87813 -16.57437 -15.99913 -15.71163 -15.54772 -15.15413 -14.86819 -14.54872 -14.47767 -14.05701 -13.99425 -13.74230 -13.69385 -13.35923 -13.16536 -13.02713 -12.91475 -12.88326 -12.77824 -12.61935 -12.32285 -11.90398 -11.73153 -11.70336 -11.39911 -11.14482 -11.05735 -10.61144 -10.30851 -10.28133 -9.77474 -8.69009 -8.34977 -6.13901 -0.30114 1.07305 1.19492 1.33291 1.42931 1.43685 1.52361 1.55280 1.70616 1.83459 2.13248 2.26966 2.99422 3.13961 3.20221 3.33385 3.45602 3.47492 3.72231 3.86857 3.89937 3.99458 4.12507 4.23438 4.30849 4.44314 4.57698 4.61799 4.66748 4.74155 4.74979 4.91213 4.94808 4.98355 5.21687 5.27104 5.30673 5.41620 5.61362 6.15320 6.19465 6.31505 6.80695 7.06160 7.07245 7.09508 8.74233 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030714 B = 0.001856 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.432254 B =15083.081828 C =15241.619154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.051 3.949 3 N -0.298 5.298 4 N -0.053 5.053 5 N -0.348 5.348 6 H 0.469 0.531 7 C -0.072 4.072 8 C 0.604 3.396 9 O -0.534 6.534 10 N -0.698 5.698 11 C 0.148 3.852 12 H 0.115 0.885 13 C -0.120 4.120 14 C 0.087 3.913 15 N -0.615 5.615 16 C 0.545 3.455 17 O -0.570 6.570 18 C -0.118 4.118 19 S -0.157 6.157 20 C -0.543 4.543 21 H 0.086 0.914 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.256 1.256 28 C 0.094 3.906 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.416 0.584 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.052 0.948 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 19.889 -21.781 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 N -0.164 5.164 4 N -0.035 5.035 5 N -0.078 5.078 6 H 0.320 0.680 7 C -0.206 4.206 8 C 0.388 3.612 9 O -0.408 6.408 10 N -0.351 5.351 11 C 0.042 3.958 12 H 0.133 0.867 13 C -0.158 4.158 14 C -0.035 4.035 15 N -0.351 5.351 16 C 0.333 3.667 17 O -0.448 6.448 18 C -0.269 4.269 19 S 0.070 5.930 20 C -0.691 4.691 21 H 0.104 0.896 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.030 4.030 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.254 0.746 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.267 21.513 -19.970 29.354 hybrid contribution 1.084 -2.451 -0.535 2.733 sum 1.351 19.063 -20.505 28.029 Atomic orbital electron populations 1.20380 0.83899 1.04872 1.04329 1.22743 0.99596 0.87115 0.99541 1.74983 0.95704 1.26880 1.18813 1.78157 1.15757 0.93248 1.16316 1.45428 1.09071 1.06378 1.46971 0.67952 1.21895 0.85539 0.95894 1.17315 1.16704 0.85792 0.82413 0.76266 1.90877 1.17784 1.82130 1.50044 1.45592 1.09856 1.05122 1.74494 1.21942 1.01381 0.79245 0.93232 0.86714 1.23127 0.98432 0.91722 1.02485 1.22749 1.02124 0.98922 0.79669 1.48337 1.62791 1.14805 1.09136 1.19874 0.77782 0.86148 0.82883 1.90703 1.50206 1.75868 1.28033 1.23292 1.05060 0.94972 1.03533 1.85680 1.83139 1.14628 1.09551 1.23189 1.47708 0.99917 0.98283 0.89616 1.26164 0.95558 1.03344 0.94248 1.70196 1.46140 1.36066 1.02465 0.84934 0.78328 0.75835 0.78763 1.19254 1.20524 1.17969 1.22359 0.98736 0.82921 0.99034 0.89482 0.89081 0.89024 0.74614 0.87933 0.85345 0.88559 0.89213 0.86921 0.87295 0.92034 0.92920 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.93 71.24 0.71 -0.38 16 2 C 0.05 0.88 7.29 42.04 0.31 1.19 16 3 N -0.30 -5.99 12.35 -47.88 -0.59 -6.58 16 4 N -0.05 -0.88 13.35 37.02 0.49 -0.38 16 5 N -0.35 -3.16 6.97 -48.52 -0.34 -3.50 16 6 H 0.47 -0.15 8.32 -219.90 -1.83 -1.98 16 7 C -0.07 -0.97 7.17 40.41 0.29 -0.68 16 8 C 0.60 8.34 7.81 86.61 0.68 9.02 16 9 O -0.53 -11.10 14.63 -4.07 -0.06 -11.16 16 10 N -0.70 -5.32 5.10 -440.34 -2.25 -7.57 16 11 C 0.15 1.58 3.31 46.18 0.15 1.73 16 12 H 0.11 1.38 7.55 -2.39 -0.02 1.36 16 13 C -0.12 -0.60 6.72 31.99 0.21 -0.38 16 14 C 0.09 1.12 6.69 86.85 0.58 1.70 16 15 N -0.62 -14.97 3.33 -811.77 -2.70 -17.67 16 16 C 0.54 20.06 7.87 87.66 0.69 20.75 16 17 O -0.57 -27.02 16.19 -3.02 -0.05 -27.07 16 18 C -0.12 -4.50 5.16 71.23 0.37 -4.13 16 19 S -0.16 -8.64 20.57 -56.49 -1.16 -9.80 16 20 C -0.54 -30.32 9.50 67.96 0.65 -29.68 16 21 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.64 5.49 84.86 0.47 1.11 16 23 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 24 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 28 C 0.09 1.98 6.63 86.73 0.58 2.55 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.37 6.61 -2.38 -0.02 1.35 16 32 H 0.42 0.18 7.83 -92.71 -0.73 -0.54 16 33 H 0.10 0.21 8.01 -2.39 -0.02 0.19 16 34 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.10 1.12 7.48 -2.39 -0.02 1.11 16 36 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.11 3.76 7.85 -2.39 -0.02 3.74 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.40 8.03 -2.39 -0.02 1.38 16 Total: -1.00 -88.43 366.79 -0.12 -88.55 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -1.45 Total: 3.06 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.67 Total: 2.80 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -5.10 Total: -91.03 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.11 Total: -38.23 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -88.43 -0.12 -88.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353358581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.179 kcal (2) G-P(sol) polarization free energy of solvation -88.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds