Wall clock time and date at job start Tue Mar 31 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 112.84767 * 2 1 4 4 C 1.34772 * 120.00362 * 309.66601 * 3 2 1 5 5 O 1.21358 * 119.99648 * 0.02562 * 4 3 2 6 6 C 1.49363 * 120.00117 * 180.02562 * 4 3 2 7 7 O 1.21358 * 120.00236 * 0.02562 * 6 4 3 8 8 N 1.34772 * 120.00117 * 180.02562 * 6 4 3 9 9 C 1.39113 * 120.00497 * 174.85026 * 8 6 4 10 10 C 1.39708 * 119.58477 * 185.31633 * 9 8 6 11 11 C 1.38651 * 119.49560 * 179.97438 * 10 9 8 12 12 C 1.38350 * 118.67088 * 0.02562 * 11 10 9 13 13 C 1.40596 * 119.13597 * 359.97438 * 12 11 10 14 14 C 1.41332 * 119.78535 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.40023 * 120.00170 * 180.02562 * 14 13 12 17 17 N 1.30740 * 120.00083 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00064 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47139 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46973 * 120.00535 * 18 16 14 21 21 H 1.48498 * 109.47200 * 240.00007 * 18 16 14 22 22 N 1.31941 * 119.57200 * 5.04325 * 9 8 6 23 23 C 1.53782 * 113.61199 * 228.69181 * 2 1 3 24 24 C 1.53777 * 87.08054 * 220.01904 * 23 2 1 25 25 F 1.39899 * 113.61599 * 270.88229 * 24 23 2 26 26 F 1.39904 * 113.61366 * 139.98258 * 24 23 2 27 27 C 1.53775 * 87.08189 * 25.43537 * 24 23 2 28 28 H 1.09001 * 109.47070 * 288.80189 * 1 2 3 29 29 H 1.09004 * 109.47228 * 48.80170 * 1 2 3 30 30 H 1.09008 * 109.47643 * 168.80305 * 1 2 3 31 31 H 0.97004 * 119.99677 * 129.67482 * 3 2 1 32 32 H 0.97008 * 120.00334 * 354.85033 * 8 6 4 33 33 H 1.08004 * 120.24589 * 359.97158 * 10 9 8 34 34 H 1.08000 * 120.66378 * 180.02562 * 11 10 9 35 35 H 1.07991 * 120.42996 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00479 * 179.97438 * 17 16 14 37 37 H 1.08996 * 113.61645 * 334.57282 * 23 2 1 38 38 H 1.09004 * 113.61023 * 105.46783 * 23 2 1 39 39 H 1.09000 * 113.61866 * 220.01588 * 27 24 23 40 40 H 1.09005 * 113.61852 * 89.11375 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0988 1.3500 0.0000 4 6 1.6740 2.2603 -0.8984 5 8 0.8198 1.9618 -1.7072 6 6 2.2544 3.6366 -0.8987 7 8 3.1089 3.9350 -0.0903 8 7 1.8291 4.5471 -1.7968 9 6 2.2899 5.8580 -1.7300 10 6 1.7604 6.8201 -2.5936 11 6 2.2206 8.1262 -2.5250 12 6 3.1979 8.4378 -1.5965 13 6 3.6907 7.4247 -0.7553 14 6 4.6887 7.7279 0.1984 15 1 5.0699 8.7351 0.2796 16 6 5.1832 6.7224 1.0382 17 7 4.7221 5.5030 0.9396 18 14 6.5017 7.1232 2.2993 19 1 6.8503 8.5639 2.2101 20 1 5.9924 6.8210 3.6611 21 1 7.7102 6.3034 2.0296 22 7 3.2177 6.1779 -0.8481 23 6 2.1460 -0.9301 -1.0585 24 6 3.1923 -1.3136 0.0012 25 9 4.3202 -0.4860 0.0004 26 9 3.5157 -2.6748 0.0025 27 6 2.1460 -0.9281 1.0602 28 1 -0.3633 0.3312 0.9728 29 1 -0.3634 0.6769 -0.7733 30 1 -0.3635 -1.0081 -0.1996 31 1 2.7814 1.5887 0.6466 32 1 1.2017 4.2884 -2.4900 33 1 0.9984 6.5485 -3.3091 34 1 1.8242 8.8852 -3.1832 35 1 3.5771 9.4459 -1.5190 36 1 5.0648 4.8063 1.5210 37 1 1.4944 -1.7548 -1.3473 38 1 2.5649 -0.4007 -1.9142 39 1 2.5650 -0.3971 1.9150 40 1 1.4944 -1.7523 1.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353414757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:22 Heat of formation + Delta-G solvation = -77.587553 kcal Electronic energy + Delta-G solvation = -29685.130510 eV Core-core repulsion = 25137.935666 eV Total energy + Delta-G solvation = -4547.194844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.00809 -47.34439 -40.69834 -39.24386 -37.97183 -37.12466 -34.45701 -33.29412 -32.75611 -30.40367 -29.53837 -29.16891 -26.75241 -25.86018 -24.84677 -22.91234 -21.82033 -21.23694 -19.88894 -19.52084 -18.41911 -17.68599 -17.24274 -16.85254 -16.51127 -16.41914 -15.83294 -15.46049 -15.36672 -14.71915 -14.50462 -14.21547 -13.93912 -13.79267 -13.63836 -13.56526 -13.43847 -13.38674 -12.99896 -12.88696 -12.70134 -12.47602 -12.03755 -12.02028 -11.55228 -11.36146 -11.22772 -11.00137 -10.82447 -10.72275 -10.67466 -10.53274 -9.96853 -9.83625 -9.34376 -9.11994 -9.00887 -8.05525 -7.35884 -7.08694 -6.23921 -4.46894 1.80697 2.54976 2.78669 3.05388 3.13903 3.17171 3.17872 3.21613 3.43759 3.80628 3.85194 3.92357 4.00903 4.04654 4.23203 4.84383 4.85922 4.97342 5.01528 5.07385 5.16879 5.39412 5.44475 5.55204 5.62759 5.94788 6.03759 6.07226 6.31617 6.40887 6.54717 6.72488 6.77839 7.13121 7.18868 7.44781 7.50293 7.74272 7.83143 7.99192 8.11892 8.34557 8.59759 8.90294 8.99076 10.12159 10.39561 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003658 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.513690 B = 7651.920500 C = 9413.758379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 N -0.688 5.688 4 C 0.517 3.483 5 O -0.525 6.525 6 C 0.466 3.534 7 O -0.384 6.384 8 N -0.638 5.638 9 C 0.368 3.632 10 C -0.349 4.349 11 C -0.036 4.036 12 C -0.300 4.300 13 C 0.271 3.729 14 C -0.423 4.423 15 H 0.084 0.916 16 C 0.059 3.941 17 N -0.662 5.662 18 Si 0.897 3.103 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.474 5.474 23 C -0.170 4.170 24 C 0.253 3.747 25 F -0.172 7.172 26 F -0.191 7.191 27 C -0.166 4.166 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.419 0.581 32 H 0.411 0.589 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.271 0.729 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 -14.332 0.469 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.071 3.929 3 N -0.343 5.343 4 C 0.299 3.701 5 O -0.401 6.401 6 C 0.242 3.758 7 O -0.246 6.246 8 N -0.286 5.286 9 C 0.130 3.870 10 C -0.374 4.374 11 C -0.060 4.060 12 C -0.323 4.323 13 C 0.146 3.854 14 C -0.454 4.454 15 H 0.102 0.898 16 C -0.169 4.169 17 N -0.281 5.281 18 Si 0.722 3.278 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.194 5.194 23 C -0.209 4.209 24 C 0.216 3.784 25 F -0.153 7.153 26 F -0.172 7.172 27 C -0.204 4.204 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.257 0.743 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.832 -15.228 1.229 16.353 hybrid contribution 0.484 0.610 -0.119 0.788 sum -5.347 -14.618 1.110 15.605 Atomic orbital electron populations 1.22076 0.91255 1.03836 1.04340 1.20940 0.95291 0.81595 0.95051 1.45468 1.42708 1.10023 1.36126 1.20853 0.82007 0.86705 0.80563 1.90631 1.31109 1.80349 1.38049 1.20053 0.85653 0.85164 0.84922 1.91226 1.23764 1.76515 1.33086 1.42971 1.46139 1.07924 1.31600 1.18537 0.92794 0.82525 0.93180 1.20504 1.12345 0.94514 1.10081 1.20586 0.94973 0.94463 0.95995 1.21655 1.06209 0.99775 1.04707 1.18367 0.90747 0.85751 0.90544 1.19631 1.16170 0.96346 1.13206 0.89785 1.26161 0.97470 0.95134 0.98158 1.70302 1.30039 1.00017 1.27750 0.86430 0.80956 0.79850 0.80575 1.18557 1.20028 1.20006 1.68644 1.11346 1.19553 1.19828 1.24607 0.96547 1.01055 0.98738 1.22072 0.82619 0.72797 1.00874 1.93078 1.54150 1.70852 1.97180 1.93009 1.94325 1.32585 1.97243 1.24492 0.96780 1.00963 0.98148 0.91752 0.88531 0.91170 0.74344 0.75315 0.88728 0.88355 0.88366 0.91687 0.85961 0.88257 0.87886 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.10 37.16 0.34 -1.11 16 2 C 0.16 1.59 1.14 -131.01 -0.15 1.44 16 3 N -0.69 -9.02 4.87 -47.31 -0.23 -9.26 16 4 C 0.52 8.25 7.65 -11.63 -0.09 8.16 16 5 O -0.53 -8.47 14.08 5.49 0.08 -8.40 16 6 C 0.47 9.30 7.84 -11.63 -0.09 9.20 16 7 O -0.38 -8.94 12.24 5.49 0.07 -8.88 16 8 N -0.64 -12.87 5.37 -11.83 -0.06 -12.93 16 9 C 0.37 8.85 7.43 -155.09 -1.15 7.69 16 10 C -0.35 -7.73 9.96 -38.88 -0.39 -8.12 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.30 -7.37 9.83 -38.65 -0.38 -7.75 16 13 C 0.27 7.41 6.55 -85.00 -0.56 6.86 16 14 C -0.42 -11.30 9.14 -37.74 -0.34 -11.65 16 15 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 16 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 17 N -0.66 -17.49 8.99 55.55 0.50 -16.99 16 18 Si 0.90 18.68 29.56 -169.99 -5.02 13.65 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 N -0.47 -12.94 5.73 -10.28 -0.06 -13.00 16 23 C -0.17 -1.64 7.21 -25.92 -0.19 -1.83 16 24 C 0.25 2.64 3.27 -25.92 -0.08 2.55 16 25 F -0.17 -2.28 16.98 2.25 0.04 -2.25 16 26 F -0.19 -2.11 17.41 2.25 0.04 -2.07 16 27 C -0.17 -1.31 7.12 -25.92 -0.18 -1.50 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 1.14 5.54 -51.93 -0.29 0.85 16 30 H 0.07 0.47 7.94 -51.92 -0.41 0.06 16 31 H 0.42 5.58 8.07 -40.82 -0.33 5.25 16 32 H 0.41 7.02 8.18 -40.82 -0.33 6.68 16 33 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 37 H 0.12 0.88 7.96 -51.93 -0.41 0.47 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.13 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -31.34 348.94 -7.44 -38.78 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.28 Total: 11.90 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -3.76 Total: 4.17 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.15 Total: -52.18 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.14 Total: -17.27 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.08 Total: -4.31 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.34 -7.44 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353414757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.804 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds