Wall clock time and date at job start Tue Mar 31 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 112.84767 * 2 1 4 4 C 1.34772 * 120.00362 * 309.66601 * 3 2 1 5 5 O 1.21358 * 119.99648 * 0.02562 * 4 3 2 6 6 C 1.49363 * 120.00117 * 180.02562 * 4 3 2 7 7 O 1.21358 * 120.00236 * 0.02562 * 6 4 3 8 8 N 1.34772 * 120.00117 * 180.02562 * 6 4 3 9 9 C 1.39113 * 120.00497 * 174.85026 * 8 6 4 10 10 C 1.39708 * 119.58477 * 185.31633 * 9 8 6 11 11 C 1.38651 * 119.49560 * 179.97438 * 10 9 8 12 12 C 1.38350 * 118.67088 * 0.02562 * 11 10 9 13 13 C 1.40596 * 119.13597 * 359.97438 * 12 11 10 14 14 C 1.41332 * 119.78535 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.40023 * 120.00170 * 180.02562 * 14 13 12 17 17 N 1.30740 * 120.00083 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00064 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47139 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46973 * 120.00535 * 18 16 14 21 21 H 1.48498 * 109.47200 * 240.00007 * 18 16 14 22 22 N 1.31941 * 119.57200 * 5.04325 * 9 8 6 23 23 C 1.53782 * 113.61199 * 228.69181 * 2 1 3 24 24 C 1.53777 * 87.08054 * 220.01904 * 23 2 1 25 25 F 1.39899 * 113.61599 * 270.88229 * 24 23 2 26 26 F 1.39904 * 113.61366 * 139.98258 * 24 23 2 27 27 C 1.53775 * 87.08189 * 25.43537 * 24 23 2 28 28 H 1.09001 * 109.47070 * 288.80189 * 1 2 3 29 29 H 1.09004 * 109.47228 * 48.80170 * 1 2 3 30 30 H 1.09008 * 109.47643 * 168.80305 * 1 2 3 31 31 H 0.97004 * 119.99677 * 129.67482 * 3 2 1 32 32 H 0.97008 * 120.00334 * 354.85033 * 8 6 4 33 33 H 1.08004 * 120.24589 * 359.97158 * 10 9 8 34 34 H 1.08000 * 120.66378 * 180.02562 * 11 10 9 35 35 H 1.07991 * 120.42996 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00479 * 179.97438 * 17 16 14 37 37 H 1.08996 * 113.61645 * 334.57282 * 23 2 1 38 38 H 1.09004 * 113.61023 * 105.46783 * 23 2 1 39 39 H 1.09000 * 113.61866 * 220.01588 * 27 24 23 40 40 H 1.09005 * 113.61852 * 89.11375 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0988 1.3500 0.0000 4 6 1.6740 2.2603 -0.8984 5 8 0.8198 1.9618 -1.7072 6 6 2.2544 3.6366 -0.8987 7 8 3.1089 3.9350 -0.0903 8 7 1.8291 4.5471 -1.7968 9 6 2.2899 5.8580 -1.7300 10 6 1.7604 6.8201 -2.5936 11 6 2.2206 8.1262 -2.5250 12 6 3.1979 8.4378 -1.5965 13 6 3.6907 7.4247 -0.7553 14 6 4.6887 7.7279 0.1984 15 1 5.0699 8.7351 0.2796 16 6 5.1832 6.7224 1.0382 17 7 4.7221 5.5030 0.9396 18 14 6.5017 7.1232 2.2993 19 1 6.8503 8.5639 2.2101 20 1 5.9924 6.8210 3.6611 21 1 7.7102 6.3034 2.0296 22 7 3.2177 6.1779 -0.8481 23 6 2.1460 -0.9301 -1.0585 24 6 3.1923 -1.3136 0.0012 25 9 4.3202 -0.4860 0.0004 26 9 3.5157 -2.6748 0.0025 27 6 2.1460 -0.9281 1.0602 28 1 -0.3633 0.3312 0.9728 29 1 -0.3634 0.6769 -0.7733 30 1 -0.3635 -1.0081 -0.1996 31 1 2.7814 1.5887 0.6466 32 1 1.2017 4.2884 -2.4900 33 1 0.9984 6.5485 -3.3091 34 1 1.8242 8.8852 -3.1832 35 1 3.5771 9.4459 -1.5190 36 1 5.0648 4.8063 1.5210 37 1 1.4944 -1.7548 -1.3473 38 1 2.5649 -0.4007 -1.9142 39 1 2.5650 -0.3971 1.9150 40 1 1.4944 -1.7523 1.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353414757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:22 Heat of formation + Delta-G solvation = -97.596669 kcal Electronic energy + Delta-G solvation = -29685.998170 eV Core-core repulsion = 25137.935666 eV Total energy + Delta-G solvation = -4548.062505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.87871 -48.22725 -41.94474 -40.69660 -39.40779 -38.55516 -36.16388 -35.00446 -34.00580 -32.26957 -31.09773 -30.21725 -27.67525 -27.45768 -26.31221 -24.02573 -23.40691 -22.84716 -21.26223 -20.58445 -20.01736 -18.95927 -18.49246 -18.07733 -17.63214 -17.44071 -17.08270 -16.77397 -16.60365 -16.43179 -16.28794 -15.60564 -15.28408 -15.05692 -15.02208 -14.66728 -14.59487 -14.50955 -14.17151 -13.92563 -13.78935 -13.66465 -13.47595 -13.22290 -12.90847 -12.74600 -12.56231 -12.53728 -12.34286 -12.27739 -11.84563 -11.72087 -11.61522 -11.52234 -10.92722 -10.51256 -10.39191 -9.93721 -9.19606 -8.92129 -8.09337 -6.42966 0.35559 1.01637 1.26512 1.31192 1.42154 1.53136 1.55818 2.26832 2.34667 2.41830 2.57244 2.70376 2.97598 3.08200 3.20238 3.40933 3.51080 4.01466 4.18337 4.27608 4.32884 4.42277 4.51544 4.61997 4.64180 4.67765 4.81685 4.88656 4.91774 4.94352 4.99120 5.25362 5.26028 5.41671 5.63486 5.71480 5.89677 5.98153 6.14358 6.28745 6.52999 6.70111 6.82905 7.03811 7.29473 8.25160 8.54631 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003658 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.513690 B = 7651.920500 C = 9413.758379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 N -0.679 5.679 4 C 0.528 3.472 5 O -0.526 6.526 6 C 0.457 3.543 7 O -0.421 6.421 8 N -0.632 5.632 9 C 0.346 3.654 10 C -0.341 4.341 11 C -0.033 4.033 12 C -0.322 4.322 13 C 0.237 3.763 14 C -0.461 4.461 15 H 0.087 0.913 16 C 0.015 3.985 17 N -0.694 5.694 18 Si 0.975 3.025 19 H -0.256 1.256 20 H -0.269 1.269 21 H -0.272 1.272 22 N -0.506 5.506 23 C -0.165 4.165 24 C 0.237 3.763 25 F -0.195 7.195 26 F -0.194 7.194 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.417 0.583 32 H 0.425 0.575 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.273 0.727 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 -15.682 0.586 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.060 3.940 3 N -0.332 5.332 4 C 0.308 3.692 5 O -0.403 6.403 6 C 0.235 3.765 7 O -0.285 6.285 8 N -0.282 5.282 9 C 0.108 3.892 10 C -0.367 4.367 11 C -0.057 4.057 12 C -0.345 4.345 13 C 0.112 3.888 14 C -0.492 4.492 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.313 5.313 18 Si 0.796 3.204 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.197 1.197 22 N -0.226 5.226 23 C -0.204 4.204 24 C 0.201 3.799 25 F -0.176 7.176 26 F -0.175 7.175 27 C -0.182 4.182 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.254 0.746 32 H 0.263 0.737 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.171 0.829 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.149 -16.614 1.317 18.135 hybrid contribution 0.773 0.977 -0.290 1.279 sum -6.377 -15.636 1.028 16.918 Atomic orbital electron populations 1.22051 0.89997 1.05165 1.03766 1.21269 0.96105 0.79942 0.96672 1.45513 1.42027 1.10931 1.34774 1.19991 0.82170 0.85466 0.81545 1.90643 1.31221 1.80068 1.38397 1.20816 0.85044 0.86655 0.83992 1.91219 1.25365 1.77647 1.34313 1.42966 1.46121 1.06927 1.32169 1.19011 0.92606 0.84376 0.93165 1.20963 1.12048 0.94157 1.09507 1.21048 0.93718 0.95505 0.95459 1.21850 1.07427 0.99814 1.05450 1.18854 0.91602 0.86739 0.91634 1.19938 1.17505 0.97047 1.14696 0.89505 1.26975 0.99495 0.94764 0.99844 1.70458 1.31341 1.00814 1.28683 0.85268 0.77736 0.79688 0.77698 1.17938 1.19419 1.19685 1.68606 1.12707 1.19907 1.21357 1.24692 0.96521 1.01578 0.97631 1.22482 0.82280 0.72356 1.02751 1.93034 1.55596 1.71589 1.97381 1.92999 1.94376 1.32748 1.97371 1.24532 0.95678 1.01082 0.96956 0.91131 0.91186 0.87939 0.74591 0.73682 0.85171 0.84291 0.87415 0.91625 0.82888 0.90354 0.87416 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.10 71.98 0.65 -1.71 16 2 C 0.15 2.64 1.14 4.13 0.00 2.64 16 3 N -0.68 -17.55 4.87 -421.95 -2.06 -19.60 16 4 C 0.53 16.85 7.65 87.24 0.67 17.52 16 5 O -0.53 -16.63 14.08 -3.27 -0.05 -16.67 16 6 C 0.46 18.70 7.84 87.24 0.68 19.38 16 7 O -0.42 -20.48 12.24 -3.27 -0.04 -20.52 16 8 N -0.63 -25.70 5.37 -309.71 -1.66 -27.37 16 9 C 0.35 16.83 7.43 133.30 0.99 17.82 16 10 C -0.34 -14.66 9.96 22.72 0.23 -14.44 16 11 C -0.03 -1.43 10.15 22.40 0.23 -1.20 16 12 C -0.32 -15.98 9.83 22.87 0.22 -15.76 16 13 C 0.24 13.41 6.55 40.20 0.26 13.68 16 14 C -0.46 -25.58 9.14 23.46 0.21 -25.37 16 15 H 0.09 4.53 7.85 -2.91 -0.02 4.50 16 16 C 0.01 0.77 5.50 85.29 0.47 1.24 16 17 N -0.69 -38.13 8.99 21.84 0.20 -37.94 16 18 Si 0.97 39.43 29.56 68.60 2.03 41.46 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 N -0.51 -28.50 5.73 -186.42 -1.07 -29.57 16 23 C -0.17 -2.87 7.21 31.12 0.22 -2.65 16 24 C 0.24 4.58 3.27 31.12 0.10 4.69 16 25 F -0.20 -5.19 16.98 44.97 0.76 -4.43 16 26 F -0.19 -3.93 17.41 44.97 0.78 -3.14 16 27 C -0.14 -1.89 7.12 31.12 0.22 -1.66 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.52 5.54 -2.39 -0.01 1.51 16 30 H 0.10 0.93 7.94 -2.38 -0.02 0.91 16 31 H 0.42 11.26 8.07 -92.70 -0.75 10.51 16 32 H 0.42 14.27 8.18 -92.70 -0.76 13.51 16 33 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 35 H 0.11 4.95 8.06 -2.92 -0.02 4.92 16 36 H 0.27 13.91 8.29 -92.71 -0.77 13.14 16 37 H 0.15 1.67 7.96 -2.39 -0.02 1.66 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.71 16 39 H 0.11 1.37 8.11 -2.39 -0.02 1.36 16 40 H 0.17 0.99 8.10 -2.38 -0.02 0.97 16 Total: -1.00 -71.40 348.94 3.69 -67.70 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.38 Total: 35.90 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 5.17 Total: 14.18 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.59 Total: -114.47 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.09 Total: -37.19 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.55 Total: -7.57 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -71.40 3.69 -67.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353414757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.892 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds