Wall clock time and date at job start Tue Mar 31 2020 22:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36595 * 126.58262 * 2 1 4 4 C 1.47527 * 125.76793 * 359.97438 * 3 2 1 5 5 O 1.21599 * 120.00063 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99834 * 179.97438 * 4 3 2 7 7 C 1.47064 * 136.06125 * 359.62614 * 6 4 3 8 8 C 1.53758 * 87.88835 * 152.96624 * 7 6 4 9 9 N 1.46503 * 114.39338 * 272.67936 * 8 7 6 10 10 C 1.34774 * 119.99937 * 248.58582 * 9 8 7 11 11 O 1.21283 * 120.00125 * 0.02562 * 10 9 8 12 12 C 1.50704 * 119.99979 * 180.02562 * 10 9 8 13 13 S 1.81001 * 109.47065 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00239 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99594 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00246 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99882 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99853 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47522 * 89.99933 * 18 16 14 20 20 H 1.48501 * 109.46721 * 210.00011 * 18 16 14 21 21 H 1.48502 * 109.46950 * 329.99715 * 18 16 14 22 22 C 1.47071 * 136.05457 * 180.02562 * 6 4 3 23 23 N 1.34395 * 108.46051 * 179.83321 * 3 2 1 24 24 N 1.28762 * 109.52309 * 0.44236 * 23 3 2 25 25 N 1.34809 * 126.57904 * 180.31613 * 2 1 3 26 26 C 1.46504 * 126.59824 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47152 * 269.70930 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71030 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71011 * 1 2 3 30 30 H 1.08997 * 113.47090 * 267.70292 * 7 6 4 31 31 H 1.09001 * 113.46244 * 38.13893 * 7 6 4 32 32 H 1.08999 * 114.08611 * 139.78817 * 8 7 6 33 33 H 0.96995 * 119.99983 * 68.59016 * 9 8 7 34 34 H 1.08996 * 109.47322 * 299.99865 * 12 10 9 35 35 H 1.08995 * 109.47070 * 60.00455 * 12 10 9 36 36 H 0.97001 * 119.99300 * 180.02562 * 17 16 14 37 37 H 1.08996 * 113.46820 * 321.85670 * 22 6 4 38 38 H 1.09004 * 113.47079 * 92.30509 * 22 6 4 39 39 H 1.08999 * 109.46910 * 90.00021 * 26 25 2 40 40 H 1.08997 * 109.47239 * 210.00142 * 26 25 2 41 41 H 1.09004 * 109.47049 * 330.00462 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7817 3.4987 0.0000 7 6 4.2493 3.5938 0.0078 8 6 4.1082 4.9528 -0.6975 9 7 4.0364 4.8716 -2.1585 10 6 5.0518 5.3409 -2.9102 11 8 6.0252 5.8300 -2.3771 12 6 4.9777 5.2579 -4.4131 13 16 6.4815 5.9645 -5.1312 14 6 6.1353 5.7438 -6.8447 15 1 5.2078 5.2844 -7.1534 16 6 7.0543 6.1604 -7.7977 17 7 8.1848 6.7198 -7.4214 18 14 6.6869 5.9270 -9.6143 19 1 5.9790 7.1245 -10.1340 20 1 7.9595 5.7431 -10.3571 21 1 5.8300 4.7278 -9.7959 22 6 2.7409 4.9688 0.0003 23 7 3.5984 0.6788 0.0037 24 7 3.6299 -0.6084 -0.0034 25 7 2.3104 -1.0825 -0.0060 26 6 1.8864 -2.4849 -0.0142 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5093 30 1 4.6743 3.6664 1.0089 31 1 4.7367 2.8343 -0.6035 32 1 4.8015 5.7138 -0.3396 33 1 3.2580 4.4801 -2.5848 34 1 4.8867 4.2147 -4.7154 35 1 4.1099 5.8154 -4.7654 36 1 8.8269 7.0112 -8.0875 37 1 1.9431 5.3810 -0.6175 38 1 2.7685 5.4037 0.9994 39 1 1.7816 -2.8267 -1.0439 40 1 2.6329 -3.0932 0.4964 41 1 0.9291 -2.5780 0.4987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356744138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:54 Heat of formation + Delta-G solvation = 71.257910 kcal Electronic energy + Delta-G solvation = -26050.303143 eV Core-core repulsion = 22095.695860 eV Total energy + Delta-G solvation = -3954.607283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.60041 -40.72357 -38.90823 -37.75331 -35.31955 -33.48076 -32.69654 -32.41577 -30.37286 -28.96933 -27.92958 -27.69365 -26.20331 -25.47530 -23.77802 -22.01654 -21.25233 -20.54006 -19.49013 -17.97531 -17.79678 -16.88788 -16.59047 -16.44145 -16.19391 -15.87232 -15.36816 -14.91053 -14.79085 -14.59331 -14.21282 -14.05536 -13.84711 -13.52005 -13.43796 -13.32950 -13.17756 -13.02448 -12.97456 -12.52144 -12.29984 -12.15406 -11.89899 -11.50231 -11.08211 -11.04918 -11.01085 -10.75601 -10.58999 -10.25363 -9.81151 -9.54611 -9.47529 -9.06668 -9.01785 -8.87753 -8.23036 -6.48618 -6.20508 -3.90831 0.74953 1.41539 1.63061 2.53596 2.94490 3.00375 3.03310 3.23562 3.28248 3.32236 3.66034 3.79004 3.87853 4.07780 4.20604 4.21641 4.32651 4.45677 4.68539 4.71492 4.83894 4.97870 5.07923 5.08769 5.14806 5.16303 5.22309 5.23975 5.38801 5.47007 5.51660 5.57470 5.78212 5.85243 5.89645 5.99574 6.15463 6.58484 7.38087 7.56408 7.60949 7.65814 7.89850 8.36585 8.56003 9.24993 10.86919 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.002328 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.970029 B =12026.500380 C =13022.231665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.123 3.877 3 C -0.103 4.103 4 C 0.635 3.365 5 O -0.540 6.540 6 N -0.633 5.633 7 C 0.089 3.911 8 C 0.111 3.889 9 N -0.717 5.717 10 C 0.538 3.462 11 O -0.513 6.513 12 C -0.154 4.154 13 S -0.058 6.058 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.099 3.901 23 N -0.195 5.195 24 N -0.066 5.066 25 N -0.366 5.366 26 C 0.087 3.913 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.401 0.599 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 -16.039 18.738 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.242 4.242 4 C 0.423 3.577 5 O -0.417 6.417 6 N -0.368 5.368 7 C -0.035 4.035 8 C 0.004 3.996 9 N -0.370 5.370 10 C 0.324 3.676 11 O -0.386 6.386 12 C -0.304 4.304 13 S 0.169 5.831 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.024 4.024 23 N -0.068 5.068 24 N -0.046 5.046 25 N -0.151 5.151 26 C -0.055 4.055 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.235 0.765 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.221 -15.622 19.551 29.291 hybrid contribution -2.671 -1.097 -1.903 3.458 sum -17.892 -16.719 17.648 30.184 Atomic orbital electron populations 1.20728 0.84590 1.05582 1.04589 1.21908 0.96227 0.86343 0.97047 1.21030 0.89151 0.94906 1.19122 1.16124 0.84095 0.81545 0.75892 1.90774 1.15292 1.83294 1.52303 1.49351 1.08592 1.06671 1.72149 1.23761 0.79975 0.98206 1.01599 1.22161 0.97572 0.98155 0.81745 1.45602 1.22458 1.64265 1.04683 1.20336 0.81808 0.76375 0.89036 1.90705 1.31171 1.42872 1.73883 1.23532 1.07918 1.05676 0.93303 1.85374 1.16960 1.78163 1.02612 1.22866 1.07544 1.46787 0.91162 0.90948 1.24988 0.94447 0.94557 0.99591 1.70017 1.07866 1.37912 1.34475 0.86168 0.77898 0.78661 0.82776 1.20269 1.20757 1.19723 1.23465 0.97897 0.79511 1.01481 1.74673 1.18907 1.03977 1.09280 1.82061 0.95839 1.03505 1.23156 1.50310 1.06523 1.07810 1.50465 1.22185 1.02432 0.75973 1.04864 0.89038 0.90538 0.86913 0.88486 0.88738 0.85248 0.76490 0.89191 0.89097 0.92187 0.89518 0.88052 0.89126 0.87928 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 9.39 36.01 0.34 -0.22 16 2 C 0.12 1.13 7.02 -81.88 -0.57 0.55 16 3 C -0.10 -1.23 6.97 -83.55 -0.58 -1.81 16 4 C 0.64 7.94 8.07 -12.48 -0.10 7.84 16 5 O -0.54 -7.45 15.49 5.28 0.08 -7.37 16 6 N -0.63 -7.00 3.69 -186.31 -0.69 -7.69 16 7 C 0.09 0.94 7.59 -8.37 -0.06 0.87 16 8 C 0.11 1.21 4.61 -67.67 -0.31 0.90 16 9 N -0.72 -9.53 5.40 -53.47 -0.29 -9.82 16 10 C 0.54 9.77 7.85 -10.98 -0.09 9.69 16 11 O -0.51 -11.13 15.46 5.55 0.09 -11.05 16 12 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 13 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 14 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 15 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 18 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.10 0.89 8.38 -8.50 -0.07 0.82 16 23 N -0.20 -2.56 10.80 32.85 0.35 -2.20 16 24 N -0.07 -0.80 13.78 60.35 0.83 0.03 16 25 N -0.37 -3.10 4.03 -63.59 -0.26 -3.35 16 26 C 0.09 0.26 11.18 59.85 0.67 0.93 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.23 7.82 -51.93 -0.41 -0.17 16 29 H 0.11 0.87 6.41 -51.93 -0.33 0.53 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 32 H 0.13 1.44 7.45 -51.93 -0.39 1.05 16 33 H 0.40 4.71 8.76 -40.82 -0.36 4.35 16 34 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 0.04 7.76 -51.93 -0.40 -0.36 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -38.30 372.39 -6.33 -44.63 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.20 Total: 0.23 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.36 Total: 3.70 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.69 Total: -48.49 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.17 Total: -18.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.30 -6.33 -44.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356744138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.892 kcal (2) G-P(sol) polarization free energy of solvation -38.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds