Wall clock time and date at job start Tue Mar 31 2020 22:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36595 * 126.58262 * 2 1 4 4 C 1.47527 * 125.76793 * 359.97438 * 3 2 1 5 5 O 1.21599 * 120.00063 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99834 * 179.97438 * 4 3 2 7 7 C 1.47064 * 136.06125 * 359.62614 * 6 4 3 8 8 C 1.53758 * 87.88835 * 152.96624 * 7 6 4 9 9 N 1.46503 * 114.39338 * 272.67936 * 8 7 6 10 10 C 1.34774 * 119.99937 * 248.58582 * 9 8 7 11 11 O 1.21283 * 120.00125 * 0.02562 * 10 9 8 12 12 C 1.50704 * 119.99979 * 180.02562 * 10 9 8 13 13 S 1.81001 * 109.47065 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00239 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99594 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00246 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99882 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99853 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47522 * 89.99933 * 18 16 14 20 20 H 1.48501 * 109.46721 * 210.00011 * 18 16 14 21 21 H 1.48502 * 109.46950 * 329.99715 * 18 16 14 22 22 C 1.47071 * 136.05457 * 180.02562 * 6 4 3 23 23 N 1.34395 * 108.46051 * 179.83321 * 3 2 1 24 24 N 1.28762 * 109.52309 * 0.44236 * 23 3 2 25 25 N 1.34809 * 126.57904 * 180.31613 * 2 1 3 26 26 C 1.46504 * 126.59824 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47152 * 269.70930 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71030 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71011 * 1 2 3 30 30 H 1.08997 * 113.47090 * 267.70292 * 7 6 4 31 31 H 1.09001 * 113.46244 * 38.13893 * 7 6 4 32 32 H 1.08999 * 114.08611 * 139.78817 * 8 7 6 33 33 H 0.96995 * 119.99983 * 68.59016 * 9 8 7 34 34 H 1.08996 * 109.47322 * 299.99865 * 12 10 9 35 35 H 1.08995 * 109.47070 * 60.00455 * 12 10 9 36 36 H 0.97001 * 119.99300 * 180.02562 * 17 16 14 37 37 H 1.08996 * 113.46820 * 321.85670 * 22 6 4 38 38 H 1.09004 * 113.47079 * 92.30509 * 22 6 4 39 39 H 1.08999 * 109.46910 * 90.00021 * 26 25 2 40 40 H 1.08997 * 109.47239 * 210.00142 * 26 25 2 41 41 H 1.09004 * 109.47049 * 330.00462 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7817 3.4987 0.0000 7 6 4.2493 3.5938 0.0078 8 6 4.1082 4.9528 -0.6975 9 7 4.0364 4.8716 -2.1585 10 6 5.0518 5.3409 -2.9102 11 8 6.0252 5.8300 -2.3771 12 6 4.9777 5.2579 -4.4131 13 16 6.4815 5.9645 -5.1312 14 6 6.1353 5.7438 -6.8447 15 1 5.2078 5.2844 -7.1534 16 6 7.0543 6.1604 -7.7977 17 7 8.1848 6.7198 -7.4214 18 14 6.6869 5.9270 -9.6143 19 1 5.9790 7.1245 -10.1340 20 1 7.9595 5.7431 -10.3571 21 1 5.8300 4.7278 -9.7959 22 6 2.7409 4.9688 0.0003 23 7 3.5984 0.6788 0.0037 24 7 3.6299 -0.6084 -0.0034 25 7 2.3104 -1.0825 -0.0060 26 6 1.8864 -2.4849 -0.0142 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5093 30 1 4.6743 3.6664 1.0089 31 1 4.7367 2.8343 -0.6035 32 1 4.8015 5.7138 -0.3396 33 1 3.2580 4.4801 -2.5848 34 1 4.8867 4.2147 -4.7154 35 1 4.1099 5.8154 -4.7654 36 1 8.8269 7.0112 -8.0875 37 1 1.9431 5.3810 -0.6175 38 1 2.7685 5.4037 0.9994 39 1 1.7816 -2.8267 -1.0439 40 1 2.6329 -3.0932 0.4964 41 1 0.9291 -2.5780 0.4987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356744138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:53 Heat of formation + Delta-G solvation = 40.981250 kcal Electronic energy + Delta-G solvation = -26051.616038 eV Core-core repulsion = 22095.695860 eV Total energy + Delta-G solvation = -3955.920178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.34140 -41.69664 -40.17574 -38.80439 -35.95384 -34.75582 -34.57473 -33.34824 -31.49959 -30.14603 -28.56736 -28.34952 -27.65162 -27.00445 -24.64649 -22.96194 -22.02350 -21.71026 -20.37173 -19.84815 -18.71280 -18.00870 -17.50215 -17.35856 -17.17526 -16.87804 -16.72282 -16.50610 -16.32186 -15.75459 -15.28311 -14.81792 -14.70564 -14.63753 -14.33776 -14.17834 -14.06057 -13.96792 -13.89657 -13.42147 -13.37049 -13.16563 -13.03655 -12.95496 -12.89024 -12.61659 -12.24499 -11.98847 -11.73772 -11.18866 -11.15005 -11.14156 -11.02727 -10.32966 -10.28420 -10.16516 -9.78486 -8.65721 -8.34659 -6.12164 0.06584 0.54473 1.08991 1.25514 1.42216 1.45643 1.55231 1.56612 1.72467 2.12396 2.19793 2.27626 2.99382 3.02838 3.26461 3.30615 3.39958 3.59433 3.63133 3.80647 3.91609 4.19844 4.28609 4.30061 4.30656 4.47579 4.49970 4.56077 4.60901 4.62266 4.63094 4.66684 4.77065 4.81129 4.92214 5.04180 5.41901 5.46558 5.47666 6.19845 6.38741 6.51704 6.74957 7.03699 7.06765 7.17902 8.74489 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.002328 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.970029 B =12026.500380 C =13022.231665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.133 4.133 4 C 0.631 3.369 5 O -0.558 6.558 6 N -0.637 5.637 7 C 0.096 3.904 8 C 0.105 3.895 9 N -0.696 5.696 10 C 0.544 3.456 11 O -0.553 6.553 12 C -0.132 4.132 13 S -0.142 6.142 14 C -0.548 4.548 15 H 0.080 0.920 16 C 0.014 3.986 17 N -0.910 5.910 18 Si 0.998 3.002 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.260 1.260 22 C 0.111 3.889 23 N -0.221 5.221 24 N -0.100 5.100 25 N -0.354 5.354 26 C 0.072 3.928 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.411 0.589 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 -17.641 18.859 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.273 4.273 4 C 0.420 3.580 5 O -0.437 6.437 6 N -0.371 5.371 7 C -0.028 4.028 8 C -0.002 4.002 9 N -0.348 5.348 10 C 0.330 3.670 11 O -0.430 6.430 12 C -0.283 4.283 13 S 0.085 5.915 14 C -0.696 4.696 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.546 5.546 18 Si 0.820 3.180 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.011 4.011 23 N -0.093 5.093 24 N -0.080 5.080 25 N -0.140 5.140 26 C -0.067 4.067 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.247 0.753 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.004 -17.266 19.701 31.787 hybrid contribution -1.925 -0.719 -1.824 2.748 sum -19.929 -17.985 17.877 32.252 Atomic orbital electron populations 1.20838 0.82052 1.06326 1.05806 1.22402 0.97522 0.85731 0.95204 1.21261 0.89542 0.95541 1.20962 1.16260 0.84006 0.82015 0.75702 1.90754 1.15841 1.83680 1.53461 1.49433 1.08545 1.07421 1.71704 1.23743 0.79861 0.96893 1.02322 1.22335 0.99376 0.98579 0.79908 1.45349 1.21214 1.62477 1.05801 1.19945 0.82246 0.76465 0.88375 1.90696 1.32968 1.45145 1.74231 1.23374 1.04435 1.05917 0.94597 1.85498 1.22545 1.79614 1.03871 1.23198 1.07986 1.46890 0.91507 0.90148 1.26109 0.94048 0.93897 1.05048 1.70175 1.09087 1.39035 1.36316 0.84965 0.78002 0.79180 0.75901 1.19210 1.20227 1.18423 1.23562 0.96259 0.78477 1.02805 1.74628 1.19893 1.04636 1.10170 1.81945 0.98054 1.03340 1.24617 1.50642 1.05269 1.09454 1.48609 1.22715 1.04222 0.73214 1.06536 0.87410 0.87131 0.88699 0.86258 0.90896 0.85123 0.75306 0.87868 0.87169 0.91954 0.89150 0.84954 0.87572 0.87169 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.39 71.24 0.67 -0.17 16 2 C 0.13 2.21 7.02 41.72 0.29 2.50 16 3 C -0.13 -3.13 6.97 40.82 0.28 -2.84 16 4 C 0.63 15.35 8.07 86.69 0.70 16.04 16 5 O -0.56 -14.91 15.49 -4.03 -0.06 -14.97 16 6 N -0.64 -13.37 3.69 -861.61 -3.18 -16.55 16 7 C 0.10 1.95 7.59 83.27 0.63 2.59 16 8 C 0.10 2.16 4.61 45.56 0.21 2.37 16 9 N -0.70 -17.88 5.40 -441.48 -2.38 -20.26 16 10 C 0.54 19.72 7.85 87.66 0.69 20.41 16 11 O -0.55 -24.52 15.46 -3.04 -0.05 -24.56 16 12 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 13 S -0.14 -7.92 20.57 -56.49 -1.16 -9.08 16 14 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 15 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 16 C 0.01 0.79 5.49 84.86 0.47 1.26 16 17 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 18 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 C 0.11 1.76 8.38 83.18 0.70 2.46 16 23 N -0.22 -5.84 10.80 -50.00 -0.54 -6.38 16 24 N -0.10 -2.41 13.78 37.02 0.51 -1.90 16 25 N -0.35 -5.45 4.03 -355.09 -1.43 -6.88 16 26 C 0.07 0.24 11.18 127.77 1.43 1.67 16 27 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.23 7.82 -2.39 -0.02 0.21 16 29 H 0.09 1.31 6.41 -2.38 -0.02 1.29 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.07 1.85 7.42 -2.39 -0.02 1.84 16 32 H 0.13 2.78 7.45 -2.39 -0.02 2.76 16 33 H 0.41 9.09 8.76 -92.71 -0.81 8.27 16 34 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 35 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.13 -0.41 7.76 -2.38 -0.02 -0.43 16 Total: -1.00 -86.79 372.39 1.44 -85.34 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.27 Total: 14.52 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 7.15 Total: 10.50 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -6.73 Total: -107.76 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.11 Total: -39.54 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -86.79 1.44 -85.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356744138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.326 kcal (2) G-P(sol) polarization free energy of solvation -86.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds