Wall clock time and date at job start Tue Mar 31 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 120.00168 * 2 1 4 4 H 1.48499 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46791 * 300.00028 * 3 2 1 6 6 H 1.48502 * 109.46926 * 59.99928 * 3 2 1 7 7 C 1.38796 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00331 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00102 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47412 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99996 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00109 * 180.02562 * 11 10 9 14 14 C 1.47579 * 134.49189 * 180.02562 * 13 11 10 15 15 C 1.53939 * 86.11911 * 155.35907 * 14 13 11 16 16 N 1.46498 * 113.74473 * 137.95167 * 15 14 13 17 17 C 1.34783 * 120.00381 * 156.92911 * 16 15 14 18 18 O 1.21282 * 119.99295 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00127 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46917 * 179.97438 * 19 17 16 21 21 N 1.46498 * 109.47171 * 179.97438 * 20 19 17 22 22 C 1.35308 * 125.86965 * 124.99697 * 21 20 19 23 23 C 1.35347 * 106.17713 * 179.97438 * 22 21 20 24 24 N 1.33774 * 106.49812 * 0.02562 * 23 22 21 25 25 N 1.28637 * 108.88333 * 0.02562 * 24 23 22 26 26 C 1.47809 * 134.45750 * 359.87250 * 13 11 10 27 27 H 0.96998 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47224 * 60.00101 * 10 9 7 29 29 H 1.08996 * 109.47621 * 300.00471 * 10 9 7 30 30 H 1.09001 * 113.77366 * 41.05764 * 14 13 11 31 31 H 1.09006 * 113.76802 * 269.66061 * 14 13 11 32 32 H 1.09003 * 113.74268 * 269.15414 * 15 14 13 33 33 H 0.97003 * 120.00071 * 336.92576 * 16 15 14 34 34 H 1.08995 * 109.47077 * 59.99566 * 19 17 16 35 35 H 1.08996 * 109.46865 * 299.99656 * 19 17 16 36 36 H 1.09002 * 109.46649 * 59.99907 * 20 19 17 37 37 H 1.09000 * 109.47178 * 300.00184 * 20 19 17 38 38 H 1.07997 * 126.91159 * 359.97438 * 22 21 20 39 39 H 1.08002 * 126.75518 * 179.97438 * 23 22 21 40 40 H 1.08997 * 113.77322 * 90.37837 * 26 13 11 41 41 H 1.09003 * 113.83648 * 318.91444 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0022 14 6 2.6888 -7.8107 -0.0025 15 6 4.0879 -7.8538 -0.6433 16 7 4.9530 -8.9043 -0.1009 17 6 5.9840 -9.3726 -0.8320 18 8 6.1950 -8.9246 -1.9391 19 6 6.8735 -10.4537 -0.2743 20 6 7.9566 -10.8013 -1.2976 21 7 8.8218 -11.8517 -0.7552 22 6 9.0938 -13.0383 -1.3458 23 6 9.9285 -13.6947 -0.5065 24 7 10.1232 -12.8884 0.5430 25 7 9.4531 -11.8048 0.3656 26 6 4.3166 -6.4716 -0.0055 27 1 -0.4850 0.8400 0.0004 28 1 3.1251 -3.7318 0.8875 29 1 3.1238 -3.7310 -0.8924 30 1 1.8944 -8.1684 -0.6575 31 1 2.6488 -8.2485 0.9950 32 1 4.0722 -7.8368 -1.7331 33 1 4.7840 -9.2628 0.7844 34 1 6.2773 -11.3408 -0.0612 35 1 7.3413 -10.1009 0.6448 36 1 8.5529 -9.9141 -1.5110 37 1 7.4884 -11.1541 -2.2165 38 1 8.7202 -13.3907 -2.2959 39 1 10.3530 -14.6767 -0.6546 40 1 4.7561 -6.5149 0.9910 41 1 4.8192 -5.7622 -0.6630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356755582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:57 Heat of formation + Delta-G solvation = 70.269764 kcal Electronic energy + Delta-G solvation = -24923.106837 eV Core-core repulsion = 20968.456704 eV Total energy + Delta-G solvation = -3954.650132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.71479 -40.90912 -39.64630 -37.61491 -35.79805 -34.34356 -32.46192 -31.79088 -31.45704 -30.32243 -27.90954 -26.43359 -25.90296 -25.44792 -23.18798 -22.45421 -21.62899 -21.04447 -19.20437 -18.50355 -17.81845 -17.30375 -17.13975 -16.87483 -16.68118 -16.17845 -15.53126 -15.36770 -15.11720 -14.83295 -14.68508 -14.23714 -14.19903 -13.87361 -13.51937 -13.23412 -13.03282 -12.95186 -12.72670 -12.50433 -12.39974 -12.02939 -11.87817 -11.62676 -11.37794 -11.09242 -11.04986 -10.79165 -10.74720 -10.49016 -9.87778 -9.85499 -9.72132 -9.47669 -9.10595 -8.76771 -8.28520 -6.54840 -6.25054 -3.96306 1.09195 1.69693 1.95253 2.12579 2.37005 2.75797 3.02176 3.19691 3.22240 3.28778 3.49232 3.71264 3.92727 3.95498 4.02203 4.16573 4.18855 4.40005 4.50306 4.55192 4.72720 4.73304 4.79035 4.80569 4.95445 5.08345 5.10451 5.24064 5.25499 5.35001 5.47827 5.49180 5.67497 5.81139 5.86267 5.95147 6.03100 6.08990 6.81403 7.54325 7.56849 7.65186 8.02973 8.32268 8.42067 9.20490 10.82477 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.001583 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.922043 B =17680.472477 C =18446.086258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.560 3.440 12 O -0.511 6.511 13 N -0.650 5.650 14 C 0.103 3.897 15 C 0.111 3.889 16 N -0.716 5.716 17 C 0.525 3.475 18 O -0.534 6.534 19 C -0.156 4.156 20 C 0.131 3.869 21 N -0.292 5.292 22 C -0.047 4.047 23 C -0.053 4.053 24 N -0.271 5.271 25 N -0.086 5.086 26 C 0.091 3.909 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.406 0.594 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.192 0.808 39 H 0.190 0.810 40 H 0.088 0.912 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.033 -27.988 -2.181 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.296 4.296 11 C 0.350 3.650 12 O -0.384 6.384 13 N -0.390 5.390 14 C -0.021 4.021 15 C 0.005 3.995 16 N -0.368 5.368 17 C 0.310 3.690 18 O -0.411 6.411 19 C -0.197 4.197 20 C 0.009 3.991 21 N -0.086 5.086 22 C -0.198 4.198 23 C -0.210 4.210 24 N -0.137 5.137 25 N -0.066 5.066 26 C -0.034 4.034 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.242 0.758 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.209 0.791 39 H 0.207 0.793 40 H 0.106 0.894 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.360 -26.793 -1.736 30.932 hybrid contribution 1.575 0.504 -0.526 1.735 sum 16.935 -26.289 -2.262 31.353 Atomic orbital electron populations 1.70026 1.05961 1.27410 1.46848 1.24994 0.95034 0.99051 0.94457 0.86105 0.79587 0.81801 0.77939 1.19600 1.20512 1.20531 1.22898 0.94948 0.91511 1.59005 0.90827 1.85403 1.04801 0.96422 1.96735 1.23482 1.06608 0.94539 1.04969 1.20047 0.85365 0.85079 0.74515 1.90726 1.14780 1.84878 1.48029 1.49784 1.07359 1.05533 1.76283 1.23368 0.96338 0.81538 1.00879 1.23211 0.89260 0.86176 1.00858 1.45883 1.30245 1.40120 1.20525 1.20219 0.80829 0.82622 0.85305 1.90783 1.70956 1.59527 1.19794 1.21889 0.97100 0.99626 1.01089 1.21849 0.90696 0.89864 0.96655 1.47553 1.32247 1.14151 1.14666 1.23764 1.05005 0.87770 1.03280 1.23676 1.02318 1.02529 0.92498 1.75152 1.17199 0.98638 1.22734 1.78315 1.07795 1.18505 1.01945 1.23689 0.82182 0.96171 1.01335 0.92189 0.89252 0.89157 0.89149 0.89657 0.85217 0.75834 0.87689 0.86626 0.87059 0.86516 0.79121 0.79278 0.89417 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -2.96 5.91 36.00 0.21 -2.75 16 11 C 0.56 10.56 8.07 -10.99 -0.09 10.47 16 12 O -0.51 -11.68 16.59 5.55 0.09 -11.59 16 13 N -0.65 -8.57 3.61 -178.35 -0.64 -9.21 16 14 C 0.10 0.92 8.59 -2.97 -0.03 0.90 16 15 C 0.11 0.83 4.40 -70.16 -0.31 0.52 16 16 N -0.72 -3.37 5.37 -55.35 -0.30 -3.67 16 17 C 0.52 3.00 7.83 -10.98 -0.09 2.92 16 18 O -0.53 -5.09 15.60 5.56 0.09 -5.01 16 19 C -0.16 -0.51 5.83 -27.88 -0.16 -0.67 16 20 C 0.13 0.51 5.74 -4.04 -0.02 0.49 16 21 N -0.29 -1.75 3.44 -61.26 -0.21 -1.96 16 22 C -0.05 -0.21 11.57 -17.05 -0.20 -0.41 16 23 C -0.05 -0.32 12.05 -17.74 -0.21 -0.54 16 24 N -0.27 -2.66 12.41 30.24 0.38 -2.29 16 25 N -0.09 -0.79 12.91 60.35 0.78 -0.01 16 26 C 0.09 0.83 8.43 -2.85 -0.02 0.81 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.13 1.16 7.51 -51.93 -0.39 0.77 16 33 H 0.41 0.85 8.71 -40.82 -0.36 0.49 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.12 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.11 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.12 0.28 8.03 -51.93 -0.42 -0.14 16 38 H 0.19 0.11 8.06 -52.49 -0.42 -0.32 16 39 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -39.78 377.68 -6.70 -46.48 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.35 Total: -4.42 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.72 Total: -1.18 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.74 Total: -42.45 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.18 Total: -16.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.78 -6.70 -46.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356755582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.747 kcal (2) G-P(sol) polarization free energy of solvation -39.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds