Wall clock time and date at job start Tue Mar 31 2020 22:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 120.00168 * 2 1 4 4 H 1.48499 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46791 * 300.00028 * 3 2 1 6 6 H 1.48502 * 109.46926 * 59.99928 * 3 2 1 7 7 C 1.38796 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00331 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00102 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47412 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99996 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00109 * 180.02562 * 11 10 9 14 14 C 1.47579 * 134.49189 * 180.02562 * 13 11 10 15 15 C 1.53939 * 86.11911 * 155.35907 * 14 13 11 16 16 N 1.46498 * 113.74473 * 137.95167 * 15 14 13 17 17 C 1.34783 * 120.00381 * 156.92911 * 16 15 14 18 18 O 1.21282 * 119.99295 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00127 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46917 * 179.97438 * 19 17 16 21 21 N 1.46498 * 109.47171 * 179.97438 * 20 19 17 22 22 C 1.35308 * 125.86965 * 124.99697 * 21 20 19 23 23 C 1.35347 * 106.17713 * 179.97438 * 22 21 20 24 24 N 1.33774 * 106.49812 * 0.02562 * 23 22 21 25 25 N 1.28637 * 108.88333 * 0.02562 * 24 23 22 26 26 C 1.47809 * 134.45750 * 359.87250 * 13 11 10 27 27 H 0.96998 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47224 * 60.00101 * 10 9 7 29 29 H 1.08996 * 109.47621 * 300.00471 * 10 9 7 30 30 H 1.09001 * 113.77366 * 41.05764 * 14 13 11 31 31 H 1.09006 * 113.76802 * 269.66061 * 14 13 11 32 32 H 1.09003 * 113.74268 * 269.15414 * 15 14 13 33 33 H 0.97003 * 120.00071 * 336.92576 * 16 15 14 34 34 H 1.08995 * 109.47077 * 59.99566 * 19 17 16 35 35 H 1.08996 * 109.46865 * 299.99656 * 19 17 16 36 36 H 1.09002 * 109.46649 * 59.99907 * 20 19 17 37 37 H 1.09000 * 109.47178 * 300.00184 * 20 19 17 38 38 H 1.07997 * 126.91159 * 359.97438 * 22 21 20 39 39 H 1.08002 * 126.75518 * 179.97438 * 23 22 21 40 40 H 1.08997 * 113.77322 * 90.37837 * 26 13 11 41 41 H 1.09003 * 113.83648 * 318.91444 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0022 14 6 2.6888 -7.8107 -0.0025 15 6 4.0879 -7.8538 -0.6433 16 7 4.9530 -8.9043 -0.1009 17 6 5.9840 -9.3726 -0.8320 18 8 6.1950 -8.9246 -1.9391 19 6 6.8735 -10.4537 -0.2743 20 6 7.9566 -10.8013 -1.2976 21 7 8.8218 -11.8517 -0.7552 22 6 9.0938 -13.0383 -1.3458 23 6 9.9285 -13.6947 -0.5065 24 7 10.1232 -12.8884 0.5430 25 7 9.4531 -11.8048 0.3656 26 6 4.3166 -6.4716 -0.0055 27 1 -0.4850 0.8400 0.0004 28 1 3.1251 -3.7318 0.8875 29 1 3.1238 -3.7310 -0.8924 30 1 1.8944 -8.1684 -0.6575 31 1 2.6488 -8.2485 0.9950 32 1 4.0722 -7.8368 -1.7331 33 1 4.7840 -9.2628 0.7844 34 1 6.2773 -11.3408 -0.0612 35 1 7.3413 -10.1009 0.6448 36 1 8.5529 -9.9141 -1.5110 37 1 7.4884 -11.1541 -2.2165 38 1 8.7202 -13.3907 -2.2959 39 1 10.3530 -14.6767 -0.6546 40 1 4.7561 -6.5149 0.9910 41 1 4.8192 -5.7622 -0.6630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356755582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:56 Heat of formation + Delta-G solvation = 38.839030 kcal Electronic energy + Delta-G solvation = -24924.469776 eV Core-core repulsion = 20968.456704 eV Total energy + Delta-G solvation = -3956.013071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.15361 -41.68923 -40.49588 -38.82920 -36.21742 -35.00767 -34.61272 -32.32657 -31.91206 -31.58671 -29.00586 -27.70363 -27.19595 -26.36037 -23.62253 -23.13077 -22.22708 -21.51145 -20.46548 -19.56133 -18.90223 -18.21381 -17.82091 -17.58227 -17.35663 -16.95196 -16.88235 -16.59343 -16.18106 -15.85114 -15.72896 -15.32340 -14.92952 -14.69214 -14.55526 -14.21120 -13.95456 -13.81565 -13.68801 -13.56638 -13.19079 -13.14697 -12.92881 -12.79519 -12.61734 -12.44257 -12.36589 -11.82970 -11.74650 -11.27683 -11.18196 -11.10506 -10.89880 -10.32826 -10.29687 -10.23347 -9.84921 -8.71111 -8.37464 -6.16414 0.68840 1.14049 1.33267 1.39969 1.41285 1.48788 1.50267 1.54317 1.66712 1.82193 2.24240 2.29711 2.96938 3.11384 3.29015 3.42136 3.53552 3.63422 3.70812 3.84296 3.89582 4.03005 4.22318 4.27385 4.31901 4.37500 4.38722 4.42078 4.51013 4.51983 4.58762 4.69296 4.80943 4.88093 4.92664 5.31575 5.36694 5.39402 5.67912 6.17364 6.37911 6.49033 7.03170 7.04003 7.12653 7.55746 8.72129 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.001583 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.922043 B =17680.472477 C =18446.086258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.121 4.121 11 C 0.558 3.442 12 O -0.565 6.565 13 N -0.649 5.649 14 C 0.102 3.898 15 C 0.131 3.869 16 N -0.701 5.701 17 C 0.530 3.470 18 O -0.572 6.572 19 C -0.144 4.144 20 C 0.127 3.873 21 N -0.289 5.289 22 C -0.033 4.033 23 C -0.067 4.067 24 N -0.315 5.315 25 N -0.123 5.123 26 C 0.087 3.913 27 H 0.272 0.728 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.423 0.577 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.233 0.767 39 H 0.214 0.786 40 H 0.115 0.885 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.195 -29.413 -2.347 35.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.272 4.272 11 C 0.347 3.653 12 O -0.443 6.443 13 N -0.386 5.386 14 C -0.020 4.020 15 C 0.024 3.976 16 N -0.354 5.354 17 C 0.317 3.683 18 O -0.451 6.451 19 C -0.184 4.184 20 C 0.007 3.993 21 N -0.083 5.083 22 C -0.184 4.184 23 C -0.225 4.225 24 N -0.180 5.180 25 N -0.103 5.103 26 C -0.036 4.036 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.249 0.751 39 H 0.231 0.769 40 H 0.132 0.868 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.581 -28.272 -1.860 33.345 hybrid contribution 0.992 0.746 -0.527 1.349 sum 18.574 -27.526 -2.387 33.292 Atomic orbital electron populations 1.70183 1.07958 1.28632 1.47899 1.26123 0.95971 1.03279 0.93612 0.84899 0.78557 0.76274 0.78173 1.18121 1.19845 1.19791 1.23224 0.95314 0.91931 1.59055 0.90002 1.85553 1.10335 0.99221 1.97042 1.23280 1.03517 0.94078 1.06320 1.19653 0.85152 0.85610 0.74846 1.90699 1.16935 1.85601 1.51051 1.49707 1.08906 1.06351 1.73640 1.23687 0.97072 0.78498 1.02746 1.22709 0.88698 0.86168 1.00011 1.45686 1.29451 1.39127 1.21173 1.20556 0.80655 0.82478 0.84618 1.90782 1.71928 1.60842 1.21592 1.21795 0.96566 0.99379 1.00661 1.21994 0.90519 0.89377 0.97458 1.47721 1.31694 1.14844 1.14045 1.24432 1.03459 0.86576 1.03968 1.24242 1.02808 1.03438 0.91990 1.75088 1.18482 0.99677 1.24798 1.78249 1.09368 1.18936 1.03700 1.24051 0.79488 0.97006 1.03067 0.91905 0.87595 0.87806 0.89647 0.86585 0.86430 0.73841 0.85652 0.86336 0.87953 0.84596 0.75103 0.76892 0.86750 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 2 C 0.02 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 10 C -0.12 -4.91 5.91 71.23 0.42 -4.49 16 11 C 0.56 21.06 8.07 87.66 0.71 21.77 16 12 O -0.56 -26.59 16.59 -3.04 -0.05 -26.64 16 13 N -0.65 -16.12 3.61 -836.57 -3.02 -19.14 16 14 C 0.10 1.60 8.59 86.48 0.74 2.35 16 15 C 0.13 1.63 4.40 46.74 0.21 1.83 16 16 N -0.70 -4.34 5.37 -447.42 -2.40 -6.74 16 17 C 0.53 4.65 7.83 87.66 0.69 5.33 16 18 O -0.57 -9.83 15.60 -3.04 -0.05 -9.88 16 19 C -0.14 -0.54 5.83 29.85 0.17 -0.37 16 20 C 0.13 0.71 5.74 86.38 0.50 1.21 16 21 N -0.29 -2.89 3.44 -347.74 -1.20 -4.09 16 22 C -0.03 -0.20 11.57 83.49 0.97 0.76 16 23 C -0.07 -0.71 12.05 83.73 1.01 0.30 16 24 N -0.32 -6.04 12.41 -58.26 -0.72 -6.76 16 25 N -0.12 -2.17 12.91 37.02 0.48 -1.69 16 26 C 0.09 1.36 8.43 86.44 0.73 2.09 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.12 1.18 8.11 -2.38 -0.02 1.16 16 32 H 0.12 1.89 7.51 -2.39 -0.02 1.87 16 33 H 0.42 0.06 8.71 -92.71 -0.81 -0.75 16 34 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.12 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 37 H 0.14 0.24 8.03 -2.39 -0.02 0.22 16 38 H 0.23 -0.75 8.06 -2.91 -0.02 -0.77 16 39 H 0.21 0.80 8.06 -2.91 -0.02 0.77 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -91.62 377.68 1.70 -89.92 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 0.26 Total: 3.19 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 7.25 Total: 1.29 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -6.58 Total: -94.06 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.10 Total: -36.52 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -91.62 1.70 -89.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356755582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.762 kcal (2) G-P(sol) polarization free energy of solvation -91.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds