Wall clock time and date at job start Tue Mar 31 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00241 * 2 1 4 4 H 1.48504 * 109.47013 * 270.00569 * 3 2 1 5 5 H 1.48505 * 109.46975 * 30.00147 * 3 2 1 6 6 H 1.48497 * 109.47091 * 150.00157 * 3 2 1 7 7 C 1.38796 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00270 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99834 * 180.27682 * 13 11 10 15 15 C 1.53002 * 109.46733 * 185.67649 * 14 13 11 16 16 N 1.46501 * 115.55223 * 273.09788 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.92154 * 16 15 14 18 18 O 1.21280 * 120.00457 * 354.97181 * 17 16 15 19 19 C 1.50706 * 119.99768 * 174.97829 * 17 16 15 20 20 C 1.50696 * 109.46901 * 179.97438 * 19 17 16 21 21 N 1.33243 * 125.52910 * 90.00152 * 20 19 17 22 22 C 1.30830 * 109.83172 * 179.97438 * 21 20 19 23 23 N 1.34434 * 108.07672 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.82423 * 179.97438 * 23 22 21 25 25 N 1.30713 * 125.52632 * 269.68807 * 20 19 17 26 26 C 1.52997 * 117.49607 * 127.43073 * 15 14 13 27 27 C 1.53006 * 117.49872 * 58.77296 * 15 14 13 28 28 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46872 * 60.00071 * 10 9 7 30 30 H 1.08997 * 109.47195 * 300.00160 * 10 9 7 31 31 H 0.97006 * 119.99784 * 0.02562 * 13 11 10 32 32 H 1.08992 * 109.47040 * 305.67696 * 14 13 11 33 33 H 1.09005 * 109.47179 * 65.68394 * 14 13 11 34 34 H 0.97002 * 119.99720 * 114.91682 * 16 15 14 35 35 H 1.09009 * 109.46694 * 299.99294 * 19 17 16 36 36 H 1.08996 * 109.47155 * 59.99387 * 19 17 16 37 37 H 1.08000 * 125.96461 * 179.97438 * 22 21 20 38 38 H 1.09001 * 117.50020 * 359.97438 * 26 15 14 39 39 H 1.09004 * 117.50183 * 145.01814 * 26 15 14 40 40 H 1.09001 * 117.49685 * 214.97588 * 27 15 14 41 41 H 1.08996 * 117.49655 * 359.96848 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3303 -7.7151 -0.0058 15 6 3.4953 -8.6965 0.1376 16 7 4.1485 -9.0890 -1.1137 17 6 3.4664 -9.7950 -2.0372 18 8 2.3433 -10.1837 -1.7957 19 6 4.0996 -10.1014 -3.3701 20 6 3.1361 -10.8966 -4.2128 21 7 2.2351 -10.3846 -5.0504 22 6 1.5627 -11.3497 -5.6231 23 7 2.0304 -12.5195 -5.1540 24 1 1.7244 -13.4073 -5.3969 25 7 3.0525 -12.2006 -4.2451 26 6 3.4012 -9.7476 1.2453 27 6 4.3733 -8.5734 1.3845 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1245 -3.7314 -0.8905 31 1 3.8009 -6.1835 -0.0006 32 1 1.6391 -7.8475 0.8264 33 1 1.8094 -7.9042 -0.9445 34 1 5.0718 -8.8408 -1.2774 35 1 4.3441 -9.1690 -3.8791 36 1 5.0099 -10.6805 -3.2153 37 1 0.7701 -11.2279 -6.3466 38 1 2.5096 -9.7396 1.8723 39 1 3.8256 -10.7311 1.0434 40 1 5.4369 -8.7848 1.2740 41 1 4.1213 -7.7929 2.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358649164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:52 Heat of formation + Delta-G solvation = 43.900917 kcal Electronic energy + Delta-G solvation = -25689.193838 eV Core-core repulsion = 21733.400267 eV Total energy + Delta-G solvation = -3955.793571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43692 -40.37970 -38.99473 -37.62113 -33.92353 -33.69928 -33.08397 -32.39930 -31.96794 -29.72853 -29.29603 -26.39682 -25.38671 -23.35540 -23.00420 -22.35825 -20.46764 -20.23528 -19.96804 -18.69430 -17.87758 -17.52565 -16.90756 -16.26057 -16.01062 -15.64841 -15.48270 -15.11499 -14.93099 -14.77863 -14.68869 -14.09012 -13.87177 -13.70315 -13.10036 -13.06234 -12.74450 -12.56282 -12.48527 -12.37902 -11.87022 -11.71994 -11.21076 -11.04078 -10.99680 -10.76497 -10.71153 -10.52932 -10.36784 -10.20172 -9.88393 -9.79319 -9.49565 -9.20319 -9.04231 -8.81371 -8.19200 -6.46310 -6.18621 -3.88899 1.25686 2.24166 2.35606 2.41322 2.89674 2.96737 3.16914 3.24277 3.25736 3.31516 3.45709 3.71355 3.84770 4.22240 4.23131 4.26734 4.44194 4.55570 4.56672 4.67985 4.92747 5.10295 5.16239 5.16561 5.26604 5.32012 5.54085 5.59230 5.70181 5.77824 5.83148 5.92631 5.96371 6.01498 6.17156 6.25043 6.64618 6.66979 7.13368 7.62183 7.73400 7.76641 7.94052 8.37998 8.67949 9.26457 10.88770 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002145 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.765646 B =13050.186814 C =14144.730488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.155 3.845 15 C 0.087 3.913 16 N -0.700 5.700 17 C 0.525 3.475 18 O -0.514 6.514 19 C -0.048 4.048 20 C 0.247 3.753 21 N -0.532 5.532 22 C 0.266 3.734 23 N -0.484 5.484 24 H 0.442 0.558 25 N -0.306 5.306 26 C -0.158 4.158 27 C -0.165 4.165 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.224 0.776 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.081 -26.164 -6.805 30.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.390 6.390 13 N -0.391 5.391 14 C 0.030 3.970 15 C -0.001 4.001 16 N -0.353 5.353 17 C 0.309 3.691 18 O -0.388 6.388 19 C -0.091 4.091 20 C -0.036 4.036 21 N -0.259 5.259 22 C -0.033 4.033 23 N -0.202 5.202 24 H 0.287 0.713 25 N -0.136 5.136 26 C -0.197 4.197 27 C -0.203 4.203 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.239 0.761 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.240 0.760 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.479 -26.745 -6.281 29.403 hybrid contribution 2.442 0.835 -0.540 2.637 sum 12.921 -25.910 -6.821 29.746 Atomic orbital electron populations 1.70023 1.05945 1.27413 1.46886 1.24997 0.95027 0.99022 0.94604 0.86170 0.79387 0.81609 0.78327 1.20283 1.20785 1.19718 1.22865 0.94890 0.91684 1.58865 0.90947 1.85441 1.04956 0.96273 1.96697 1.23517 1.06511 0.95370 1.04838 1.20311 0.86542 0.86226 0.75275 1.90716 1.15386 1.85563 1.47321 1.45996 1.09834 1.05206 1.78046 1.20895 0.93096 0.79308 1.03686 1.20774 0.97950 1.00693 0.80641 1.45252 1.15861 1.56935 1.17245 1.20209 0.86311 0.77652 0.84912 1.90773 1.18668 1.50309 1.79010 1.19873 0.96291 1.01272 0.91656 1.23228 0.96037 0.88524 0.95805 1.70394 1.09837 1.32754 1.12932 1.26121 0.98454 0.81033 0.97722 1.48077 1.28329 1.10297 1.33463 0.71277 1.77933 1.08363 1.15662 1.11619 1.23357 1.01816 0.94517 0.99964 1.23370 0.97426 1.01771 0.97712 0.92205 0.89272 0.89275 0.76985 0.90237 0.90537 0.76108 0.85655 0.86443 0.75960 0.87635 0.88199 0.87886 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 10.19 7.85 -10.98 -0.09 10.10 16 12 O -0.52 -12.27 15.85 5.56 0.09 -12.18 16 13 N -0.74 -10.08 5.43 -60.30 -0.33 -10.41 16 14 C 0.16 2.08 5.66 -4.04 -0.02 2.06 16 15 C 0.09 0.82 1.74 -131.82 -0.23 0.59 16 16 N -0.70 -5.49 5.45 -47.60 -0.26 -5.75 16 17 C 0.52 5.58 7.50 -10.98 -0.08 5.50 16 18 O -0.51 -7.93 15.24 5.56 0.08 -7.84 16 19 C -0.05 -0.39 6.33 -29.03 -0.18 -0.57 16 20 C 0.25 2.78 6.63 -156.85 -1.04 1.74 16 21 N -0.53 -6.21 11.19 -11.98 -0.13 -6.34 16 22 C 0.27 2.02 13.13 -90.65 -1.19 0.83 16 23 N -0.48 -3.52 7.45 29.53 0.22 -3.30 16 24 H 0.44 1.44 8.96 -182.33 -1.63 -0.19 16 25 N -0.31 -3.34 12.80 32.42 0.41 -2.92 16 26 C -0.16 -1.35 10.11 -26.69 -0.27 -1.62 16 27 C -0.17 -1.13 9.91 -26.69 -0.26 -1.39 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.40 4.10 8.35 -40.82 -0.34 3.76 16 32 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 33 H 0.08 1.27 7.15 -51.93 -0.37 0.90 16 34 H 0.40 1.72 8.83 -40.82 -0.36 1.36 16 35 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.11 0.93 8.04 -51.93 -0.42 0.52 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -42.62 378.46 -10.12 -52.74 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.46 Total: 2.02 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.95 Total: 1.34 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.65 Total: -54.38 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.17 Total: -20.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -42.62 -10.12 -52.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358649164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.643 kcal (2) G-P(sol) polarization free energy of solvation -42.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds