Wall clock time and date at job start Tue Mar 31 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00241 * 2 1 4 4 H 1.48504 * 109.47013 * 270.00569 * 3 2 1 5 5 H 1.48505 * 109.46975 * 30.00147 * 3 2 1 6 6 H 1.48497 * 109.47091 * 150.00157 * 3 2 1 7 7 C 1.38796 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00270 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99834 * 180.27682 * 13 11 10 15 15 C 1.53002 * 109.46733 * 185.67649 * 14 13 11 16 16 N 1.46501 * 115.55223 * 273.09788 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.92154 * 16 15 14 18 18 O 1.21280 * 120.00457 * 354.97181 * 17 16 15 19 19 C 1.50706 * 119.99768 * 174.97829 * 17 16 15 20 20 C 1.50696 * 109.46901 * 179.97438 * 19 17 16 21 21 N 1.33243 * 125.52910 * 90.00152 * 20 19 17 22 22 C 1.30830 * 109.83172 * 179.97438 * 21 20 19 23 23 N 1.34434 * 108.07672 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.82423 * 179.97438 * 23 22 21 25 25 N 1.30713 * 125.52632 * 269.68807 * 20 19 17 26 26 C 1.52997 * 117.49607 * 127.43073 * 15 14 13 27 27 C 1.53006 * 117.49872 * 58.77296 * 15 14 13 28 28 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46872 * 60.00071 * 10 9 7 30 30 H 1.08997 * 109.47195 * 300.00160 * 10 9 7 31 31 H 0.97006 * 119.99784 * 0.02562 * 13 11 10 32 32 H 1.08992 * 109.47040 * 305.67696 * 14 13 11 33 33 H 1.09005 * 109.47179 * 65.68394 * 14 13 11 34 34 H 0.97002 * 119.99720 * 114.91682 * 16 15 14 35 35 H 1.09009 * 109.46694 * 299.99294 * 19 17 16 36 36 H 1.08996 * 109.47155 * 59.99387 * 19 17 16 37 37 H 1.08000 * 125.96461 * 179.97438 * 22 21 20 38 38 H 1.09001 * 117.50020 * 359.97438 * 26 15 14 39 39 H 1.09004 * 117.50183 * 145.01814 * 26 15 14 40 40 H 1.09001 * 117.49685 * 214.97588 * 27 15 14 41 41 H 1.08996 * 117.49655 * 359.96848 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3303 -7.7151 -0.0058 15 6 3.4953 -8.6965 0.1376 16 7 4.1485 -9.0890 -1.1137 17 6 3.4664 -9.7950 -2.0372 18 8 2.3433 -10.1837 -1.7957 19 6 4.0996 -10.1014 -3.3701 20 6 3.1361 -10.8966 -4.2128 21 7 2.2351 -10.3846 -5.0504 22 6 1.5627 -11.3497 -5.6231 23 7 2.0304 -12.5195 -5.1540 24 1 1.7244 -13.4073 -5.3969 25 7 3.0525 -12.2006 -4.2451 26 6 3.4012 -9.7476 1.2453 27 6 4.3733 -8.5734 1.3845 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1245 -3.7314 -0.8905 31 1 3.8009 -6.1835 -0.0006 32 1 1.6391 -7.8475 0.8264 33 1 1.8094 -7.9042 -0.9445 34 1 5.0718 -8.8408 -1.2774 35 1 4.3441 -9.1690 -3.8791 36 1 5.0099 -10.6805 -3.2153 37 1 0.7701 -11.2279 -6.3466 38 1 2.5096 -9.7396 1.8723 39 1 3.8256 -10.7311 1.0434 40 1 5.4369 -8.7848 1.2740 41 1 4.1213 -7.7929 2.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358649164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:52 Heat of formation + Delta-G solvation = 9.237663 kcal Electronic energy + Delta-G solvation = -25690.696950 eV Core-core repulsion = 21733.400267 eV Total energy + Delta-G solvation = -3957.296683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.09058 -41.27942 -40.37119 -38.53882 -35.23990 -34.56305 -34.45007 -33.80329 -32.65385 -31.27001 -29.97058 -27.87400 -27.30674 -24.04412 -23.66070 -23.07055 -21.71028 -21.19426 -20.81323 -19.81719 -19.29572 -18.25436 -18.04146 -17.60444 -17.06672 -16.86035 -16.53386 -16.40925 -16.23467 -15.83756 -15.70740 -15.52393 -14.94181 -14.60528 -14.42047 -14.36797 -14.30392 -13.53687 -13.35600 -13.18252 -13.14586 -13.03451 -12.86965 -12.59462 -12.44752 -11.95854 -11.71471 -11.54625 -11.25375 -11.12394 -11.09710 -11.02791 -10.91282 -10.60272 -10.25019 -10.18121 -10.08290 -8.65432 -8.32458 -6.10942 0.61502 1.27642 1.44547 1.48203 1.55075 1.58604 1.61076 1.66398 1.83241 2.15196 2.22332 2.29463 2.81982 3.01672 3.15519 3.34351 3.46100 3.64776 3.76803 3.81263 3.91169 4.03497 4.14633 4.32009 4.42548 4.47889 4.52472 4.55266 4.60223 4.73976 4.76830 4.97901 5.18461 5.20917 5.34272 5.35618 5.43985 5.49440 6.22029 6.23519 6.49185 6.52773 7.08469 7.08572 7.23487 7.25702 8.76821 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002145 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.765646 B =13050.186814 C =14144.730488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.570 6.570 13 N -0.703 5.703 14 C 0.161 3.839 15 C 0.071 3.929 16 N -0.680 5.680 17 C 0.521 3.479 18 O -0.570 6.570 19 C -0.045 4.045 20 C 0.230 3.770 21 N -0.580 5.580 22 C 0.272 3.728 23 N -0.474 5.474 24 H 0.458 0.542 25 N -0.336 5.336 26 C -0.165 4.165 27 C -0.130 4.130 28 H 0.270 0.730 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.418 0.582 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.425 0.575 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.267 0.733 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.803 -26.285 -6.917 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.069 5.931 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.449 6.449 13 N -0.358 5.358 14 C 0.036 3.964 15 C -0.017 4.017 16 N -0.334 5.334 17 C 0.307 3.693 18 O -0.448 6.448 19 C -0.087 4.087 20 C -0.054 4.054 21 N -0.309 5.309 22 C -0.026 4.026 23 N -0.194 5.194 24 H 0.306 0.694 25 N -0.166 5.166 26 C -0.204 4.204 27 C -0.167 4.167 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.256 0.744 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.264 0.736 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.283 0.717 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.308 -26.911 -6.400 31.143 hybrid contribution 1.258 0.708 -0.535 1.539 sum 15.566 -26.204 -6.935 31.257 Atomic orbital electron populations 1.70200 1.08065 1.28565 1.48119 1.26172 0.95977 1.03454 0.93804 0.84926 0.78231 0.75865 0.78771 1.19347 1.20469 1.17927 1.23202 0.95399 0.91772 1.58695 0.89629 1.85692 1.10857 0.99496 1.97061 1.23340 1.03425 0.93739 1.07086 1.20199 0.86185 0.86863 0.75033 1.90707 1.17788 1.86176 1.50186 1.45657 1.10317 1.04285 1.75509 1.20769 0.94755 0.79666 1.01235 1.20513 0.98289 1.00789 0.82118 1.45062 1.16527 1.55626 1.16181 1.20725 0.85675 0.76954 0.85914 1.90749 1.21184 1.52732 1.80153 1.20031 0.96581 1.02335 0.89779 1.23764 0.96559 0.88900 0.96142 1.70381 1.11287 1.34761 1.14499 1.26943 0.98165 0.80325 0.97158 1.48023 1.27500 1.11284 1.32602 0.69362 1.77819 1.09952 1.15864 1.12991 1.23396 1.02470 0.95291 0.99256 1.23504 0.98576 1.00066 0.94568 0.92065 0.86648 0.87027 0.74407 0.91789 0.94026 0.73587 0.83961 0.83146 0.71723 0.88650 0.87596 0.84525 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 2 C 0.01 0.59 5.49 84.86 0.47 1.06 16 3 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.54 -31.00 9.50 67.95 0.65 -30.35 16 8 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 10 C -0.12 -4.93 6.16 71.24 0.44 -4.49 16 11 C 0.53 20.31 7.85 87.66 0.69 21.00 16 12 O -0.57 -28.17 15.85 -3.02 -0.05 -28.22 16 13 N -0.70 -18.31 5.43 -463.07 -2.51 -20.83 16 14 C 0.16 4.34 5.66 86.38 0.49 4.83 16 15 C 0.07 1.22 1.74 3.61 0.01 1.23 16 16 N -0.68 -9.25 5.45 -422.91 -2.31 -11.55 16 17 C 0.52 10.76 7.50 87.66 0.66 11.42 16 18 O -0.57 -18.17 15.24 -3.03 -0.05 -18.21 16 19 C -0.05 -0.67 6.33 29.10 0.18 -0.49 16 20 C 0.23 5.10 6.63 138.63 0.92 6.02 16 21 N -0.58 -13.53 11.19 -191.80 -2.15 -15.67 16 22 C 0.27 3.91 13.13 180.36 2.37 6.28 16 23 N -0.47 -6.60 7.45 -60.49 -0.45 -7.05 16 24 H 0.46 2.58 8.96 -213.09 -1.91 0.67 16 25 N -0.34 -7.23 12.80 -51.34 -0.66 -7.89 16 26 C -0.17 -2.58 10.11 30.62 0.31 -2.27 16 27 C -0.13 -1.31 9.91 30.62 0.30 -1.00 16 28 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 29 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 31 H 0.42 7.29 8.35 -92.70 -0.77 6.52 16 32 H 0.06 1.94 7.87 -2.39 -0.02 1.92 16 33 H 0.04 1.45 7.15 -2.38 -0.02 1.43 16 34 H 0.42 2.08 8.83 -92.71 -0.82 1.26 16 35 H 0.14 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.27 0.85 8.06 -2.91 -0.02 0.82 16 38 H 0.10 1.67 8.04 -2.39 -0.02 1.66 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -99.22 378.46 -1.93 -101.15 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -2.39 Total: 15.93 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 7.48 Total: 13.23 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -7.79 Total: -119.39 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.09 Total: -46.43 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -99.22 -1.93 -101.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358649164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.386 kcal (2) G-P(sol) polarization free energy of solvation -99.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds