Wall clock time and date at job start Tue Mar 31 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47260 * 270.00091 * 3 2 1 5 5 H 1.48499 * 109.47194 * 30.00381 * 3 2 1 6 6 H 1.48506 * 109.47042 * 149.99938 * 3 2 1 7 7 C 1.37883 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99921 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46457 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99338 * 169.99935 * 10 9 7 12 12 C 1.53242 * 109.33398 * 187.25159 * 11 10 9 13 13 N 1.47075 * 108.52208 * 306.17053 * 12 11 10 14 14 C 1.34778 * 120.88096 * 231.18771 * 13 12 11 15 15 O 1.21586 * 120.00427 * 184.99947 * 14 13 12 16 16 N 1.34777 * 119.99922 * 4.99327 * 14 13 12 17 17 C 1.39055 * 119.99972 * 174.83643 * 16 14 13 18 18 C 1.35271 * 125.50032 * 179.97438 * 17 16 14 19 19 N 1.30468 * 115.57306 * 179.74726 * 18 17 16 20 20 C 1.30627 * 116.02770 * 0.47297 * 19 18 17 21 21 C 1.46808 * 125.47196 * 179.82150 * 20 19 18 22 22 N 1.34781 * 120.00003 * 359.69015 * 21 20 19 23 23 O 1.21681 * 119.99966 * 179.69588 * 21 20 19 24 24 S 1.71069 * 125.50320 * 359.97438 * 17 16 14 25 25 C 1.47071 * 118.23884 * 51.46381 * 13 12 11 26 26 C 1.46894 * 111.00010 * 294.29639 * 10 9 7 27 27 H 0.97007 * 119.99902 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47005 * 60.00016 * 9 7 2 29 29 H 1.08998 * 109.47097 * 299.99835 * 9 7 2 30 30 H 1.08995 * 109.48933 * 67.29783 * 11 10 9 31 31 H 1.08994 * 109.49350 * 307.21147 * 11 10 9 32 32 H 1.09003 * 109.62429 * 186.45731 * 12 11 10 33 33 H 1.09002 * 109.63181 * 65.88329 * 12 11 10 34 34 H 0.97002 * 120.00085 * 354.84708 * 16 14 13 35 35 H 1.07992 * 122.20989 * 0.02562 * 18 17 16 36 36 H 0.97002 * 119.99887 * 359.97438 * 22 21 20 37 37 H 0.96999 * 120.00208 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.63535 * 68.24730 * 25 13 12 39 39 H 1.09008 * 109.62963 * 188.83152 * 25 13 12 40 40 H 1.08995 * 109.49760 * 292.71184 * 26 10 9 41 41 H 1.09006 * 109.49199 * 52.76949 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5791 -0.0013 11 6 5.4502 -2.6249 -0.2390 12 6 5.8899 -4.0825 -0.4132 13 7 5.4258 -4.8528 0.7506 14 6 6.2757 -5.6334 1.4470 15 8 5.8578 -6.3331 2.3493 16 7 7.5887 -5.6385 1.1431 17 6 8.4813 -6.3599 1.9283 18 6 9.8162 -6.4428 1.7259 19 7 10.4722 -7.1715 2.5865 20 6 9.7573 -7.7336 3.5243 21 6 10.2791 -8.5951 4.5924 22 7 11.5977 -8.8672 4.6551 23 8 9.5212 -9.0637 5.4210 24 16 8.0685 -7.2857 3.3063 25 6 4.0085 -4.7535 1.1306 26 6 3.6441 -3.2648 1.2477 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8753 -0.6796 -0.8894 30 1 5.9722 -2.1867 0.6116 31 1 5.6886 -2.0626 -1.1417 32 1 6.9770 -4.1320 -0.4753 33 1 5.4494 -4.4917 -1.3224 34 1 7.9111 -5.1389 0.3767 35 1 10.3070 -5.9354 0.9086 36 1 12.2019 -8.4940 3.9943 37 1 11.9424 -9.4367 5.3605 38 1 3.3906 -5.2259 0.3670 39 1 3.8512 -5.2468 2.0898 40 1 4.1914 -2.8177 2.0775 41 1 2.5728 -3.1663 1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364159591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:04 Heat of formation + Delta-G solvation = 9.341435 kcal Electronic energy + Delta-G solvation = -26324.105244 eV Core-core repulsion = 22366.813061 eV Total energy + Delta-G solvation = -3957.292183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14640 -40.19484 -39.07046 -38.11865 -35.55742 -34.83513 -33.91499 -32.50185 -31.11822 -29.84445 -28.68572 -26.51777 -25.68080 -23.62655 -22.87389 -22.39154 -21.17317 -20.72851 -19.80307 -18.85128 -18.43014 -17.50340 -16.98101 -16.81781 -16.26628 -16.19605 -15.56279 -15.43026 -14.85012 -14.74051 -14.60322 -14.41163 -14.25004 -14.13505 -14.04106 -13.67959 -13.33250 -12.63446 -12.40021 -11.84400 -11.70193 -11.65080 -11.47506 -11.12091 -11.01983 -10.87304 -10.78240 -10.67900 -10.43899 -10.05015 -10.03247 -9.86570 -9.48138 -9.41221 -8.94468 -8.68894 -8.43576 -7.65012 -6.16890 -4.15791 0.03226 0.75028 1.45426 1.95051 2.11397 2.70796 3.01556 3.18811 3.22195 3.27034 3.27612 3.35409 4.04553 4.30305 4.34512 4.58791 4.78875 4.86663 4.98011 5.08303 5.16568 5.31663 5.41096 5.52411 5.58044 5.73116 5.84021 5.85464 6.01395 6.21859 6.30747 6.39127 6.46872 6.67433 6.77978 6.89653 7.25631 7.28940 7.39639 7.64288 7.79607 7.88618 7.91941 8.49123 8.89977 9.43701 10.95765 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.002131 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.823076 B =13135.368168 C =13372.033990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.037 3.963 12 C 0.114 3.886 13 N -0.609 5.609 14 C 0.697 3.303 15 O -0.559 6.559 16 N -0.639 5.639 17 C 0.013 3.987 18 C -0.037 4.037 19 N -0.398 5.398 20 C -0.118 4.118 21 C 0.613 3.387 22 N -0.834 5.834 23 O -0.538 6.538 24 S 0.381 5.619 25 C 0.131 3.869 26 C 0.049 3.951 27 H 0.265 0.735 28 H -0.010 1.010 29 H 0.026 0.974 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.418 0.582 35 H 0.176 0.824 36 H 0.410 0.590 37 H 0.407 0.593 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.673 -13.198 1.882 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.093 4.093 12 C -0.010 4.010 13 N -0.344 5.344 14 C 0.398 3.602 15 O -0.437 6.437 16 N -0.289 5.289 17 C -0.211 4.211 18 C -0.199 4.199 19 N -0.115 5.115 20 C -0.391 4.391 21 C 0.395 3.605 22 N -0.398 5.398 23 O -0.414 6.414 24 S 0.630 5.370 25 C 0.009 3.991 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.258 0.742 35 H 0.193 0.807 36 H 0.240 0.760 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.882 -14.306 3.129 25.505 hybrid contribution 2.001 2.379 -0.931 3.245 sum 22.883 -11.928 2.197 25.899 Atomic orbital electron populations 1.69883 1.06116 1.27010 1.50425 1.24901 0.94748 0.98882 0.94695 0.86870 0.80235 0.84068 0.78590 1.20098 1.21107 1.19401 1.20978 0.88470 0.94812 1.51041 0.89983 1.20184 0.97335 0.83484 0.95262 1.61923 1.09402 1.19487 1.34197 1.22442 0.91235 0.94381 1.01239 1.21919 0.97794 0.92542 0.88709 1.47432 1.10355 1.45811 1.30813 1.15881 0.80176 0.81432 0.82733 1.90872 1.74790 1.44623 1.33398 1.42059 1.05244 1.50347 1.31224 1.23521 0.94343 1.02329 1.00937 1.21359 0.88171 1.06525 1.03842 1.66594 1.37169 1.06268 1.01505 1.27494 0.98057 1.10318 1.03204 1.16584 0.82753 0.78869 0.82333 1.43503 1.08015 1.53770 1.34506 1.90917 1.57392 1.52664 1.40388 1.85368 1.01241 1.35633 1.14714 1.22046 0.77225 0.97766 1.02077 1.22524 1.03423 0.91509 0.90581 0.92507 0.99258 0.95564 0.95234 0.89621 0.91156 0.89505 0.74186 0.80735 0.75986 0.76164 0.90104 0.88673 0.95415 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.51 -13.61 8.96 -34.44 -0.31 -13.92 16 8 H 0.08 2.35 7.37 -52.49 -0.39 1.97 16 9 C 0.16 3.59 3.79 -4.97 -0.02 3.58 16 10 N -0.53 -9.48 4.62 -235.46 -1.09 -10.56 16 11 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 12 C 0.11 1.16 6.59 -3.60 -0.02 1.13 16 13 N -0.61 -7.55 3.00 -177.91 -0.53 -8.09 16 14 C 0.70 8.87 8.27 -86.92 -0.72 8.15 16 15 O -0.56 -8.64 13.37 5.29 0.07 -8.57 16 16 N -0.64 -6.16 5.32 -16.19 -0.09 -6.25 16 17 C 0.01 0.13 7.05 -15.33 -0.11 0.02 16 18 C -0.04 -0.34 11.28 -19.19 -0.22 -0.55 16 19 N -0.40 -4.06 10.21 -11.44 -0.12 -4.18 16 20 C -0.12 -1.34 7.43 -14.60 -0.11 -1.45 16 21 C 0.61 6.84 8.06 -12.79 -0.10 6.74 16 22 N -0.83 -5.73 8.87 30.29 0.27 -5.46 16 23 O -0.54 -7.73 17.77 5.21 0.09 -7.64 16 24 S 0.38 4.61 20.11 -107.50 -2.16 2.45 16 25 C 0.13 1.84 6.61 -3.37 -0.02 1.82 16 26 C 0.05 0.82 5.47 -3.46 -0.02 0.80 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H -0.01 -0.23 7.18 -51.93 -0.37 -0.61 16 29 H 0.03 0.57 7.40 -51.93 -0.38 0.19 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.06 7.99 -51.93 -0.41 0.65 16 32 H 0.07 0.46 5.64 -51.93 -0.29 0.16 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.42 2.70 6.31 -40.82 -0.26 2.44 16 35 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.41 2.15 8.47 -40.82 -0.35 1.80 16 37 H 0.41 1.97 8.93 -40.82 -0.36 1.60 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.34 7.09 -51.92 -0.37 0.97 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 2.06 6.67 -51.93 -0.35 1.71 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -33.59 352.05 -8.72 -42.32 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.81 Total: 1.82 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.77 Total: 8.63 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.78 Total: -60.06 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.16 Total: -16.21 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.16 Total: 2.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.59 -8.72 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364159591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.660 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds