Wall clock time and date at job start Tue Mar 31 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47260 * 270.00091 * 3 2 1 5 5 H 1.48499 * 109.47194 * 30.00381 * 3 2 1 6 6 H 1.48506 * 109.47042 * 149.99938 * 3 2 1 7 7 C 1.37883 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99921 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46457 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99338 * 169.99935 * 10 9 7 12 12 C 1.53242 * 109.33398 * 187.25159 * 11 10 9 13 13 N 1.47075 * 108.52208 * 306.17053 * 12 11 10 14 14 C 1.34778 * 120.88096 * 231.18771 * 13 12 11 15 15 O 1.21586 * 120.00427 * 184.99947 * 14 13 12 16 16 N 1.34777 * 119.99922 * 4.99327 * 14 13 12 17 17 C 1.39055 * 119.99972 * 174.83643 * 16 14 13 18 18 C 1.35271 * 125.50032 * 179.97438 * 17 16 14 19 19 N 1.30468 * 115.57306 * 179.74726 * 18 17 16 20 20 C 1.30627 * 116.02770 * 0.47297 * 19 18 17 21 21 C 1.46808 * 125.47196 * 179.82150 * 20 19 18 22 22 N 1.34781 * 120.00003 * 359.69015 * 21 20 19 23 23 O 1.21681 * 119.99966 * 179.69588 * 21 20 19 24 24 S 1.71069 * 125.50320 * 359.97438 * 17 16 14 25 25 C 1.47071 * 118.23884 * 51.46381 * 13 12 11 26 26 C 1.46894 * 111.00010 * 294.29639 * 10 9 7 27 27 H 0.97007 * 119.99902 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47005 * 60.00016 * 9 7 2 29 29 H 1.08998 * 109.47097 * 299.99835 * 9 7 2 30 30 H 1.08995 * 109.48933 * 67.29783 * 11 10 9 31 31 H 1.08994 * 109.49350 * 307.21147 * 11 10 9 32 32 H 1.09003 * 109.62429 * 186.45731 * 12 11 10 33 33 H 1.09002 * 109.63181 * 65.88329 * 12 11 10 34 34 H 0.97002 * 120.00085 * 354.84708 * 16 14 13 35 35 H 1.07992 * 122.20989 * 0.02562 * 18 17 16 36 36 H 0.97002 * 119.99887 * 359.97438 * 22 21 20 37 37 H 0.96999 * 120.00208 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.63535 * 68.24730 * 25 13 12 39 39 H 1.09008 * 109.62963 * 188.83152 * 25 13 12 40 40 H 1.08995 * 109.49760 * 292.71184 * 26 10 9 41 41 H 1.09006 * 109.49199 * 52.76949 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5791 -0.0013 11 6 5.4502 -2.6249 -0.2390 12 6 5.8899 -4.0825 -0.4132 13 7 5.4258 -4.8528 0.7506 14 6 6.2757 -5.6334 1.4470 15 8 5.8578 -6.3331 2.3493 16 7 7.5887 -5.6385 1.1431 17 6 8.4813 -6.3599 1.9283 18 6 9.8162 -6.4428 1.7259 19 7 10.4722 -7.1715 2.5865 20 6 9.7573 -7.7336 3.5243 21 6 10.2791 -8.5951 4.5924 22 7 11.5977 -8.8672 4.6551 23 8 9.5212 -9.0637 5.4210 24 16 8.0685 -7.2857 3.3063 25 6 4.0085 -4.7535 1.1306 26 6 3.6441 -3.2648 1.2477 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8753 -0.6796 -0.8894 30 1 5.9722 -2.1867 0.6116 31 1 5.6886 -2.0626 -1.1417 32 1 6.9770 -4.1320 -0.4753 33 1 5.4494 -4.4917 -1.3224 34 1 7.9111 -5.1389 0.3767 35 1 10.3070 -5.9354 0.9086 36 1 12.2019 -8.4940 3.9943 37 1 11.9424 -9.4367 5.3605 38 1 3.3906 -5.2259 0.3670 39 1 3.8512 -5.2468 2.0898 40 1 4.1914 -2.8177 2.0775 41 1 2.5728 -3.1663 1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364159591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:04 Heat of formation + Delta-G solvation = -19.991120 kcal Electronic energy + Delta-G solvation = -26325.377199 eV Core-core repulsion = 22366.813061 eV Total energy + Delta-G solvation = -3958.564138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09681 -41.03580 -39.96461 -39.29555 -36.48819 -36.15573 -34.68855 -34.43308 -32.22156 -30.97920 -29.99793 -27.66912 -26.85233 -24.76792 -23.83004 -23.60038 -22.58479 -21.57222 -20.88494 -19.65624 -19.44723 -18.89445 -18.26686 -17.75583 -17.21560 -17.15016 -16.59728 -16.34359 -16.29826 -16.08048 -15.67654 -15.52453 -15.23815 -15.20570 -15.05478 -14.93326 -14.50829 -14.39076 -13.68155 -13.28740 -12.89256 -12.60529 -12.56071 -12.49023 -12.35172 -12.26744 -12.09929 -11.87508 -11.72364 -11.65880 -11.41087 -10.78418 -10.77826 -10.74333 -10.36476 -9.97331 -9.27699 -9.06904 -8.27533 -6.31155 -0.82145 -0.08193 0.61354 1.14624 1.20660 1.35475 1.37378 1.46693 1.77085 2.18379 2.34378 2.42149 2.54349 3.04322 3.12039 3.33914 3.81894 3.83335 3.96282 4.05623 4.20136 4.21542 4.38058 4.43926 4.63955 4.67255 4.79334 4.81117 4.93267 4.97270 5.07500 5.11030 5.22379 5.49592 5.52487 5.77120 5.93615 6.19906 6.25545 6.42336 6.49647 6.60990 6.76084 6.97488 7.18858 7.32511 8.88620 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.002131 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.823076 B =13135.368168 C =13372.033990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.516 4.516 8 H 0.041 0.959 9 C 0.172 3.828 10 N -0.538 5.538 11 C 0.033 3.967 12 C 0.117 3.883 13 N -0.610 5.610 14 C 0.696 3.304 15 O -0.590 6.590 16 N -0.621 5.621 17 C 0.013 3.987 18 C -0.023 4.023 19 N -0.393 5.393 20 C -0.119 4.119 21 C 0.607 3.393 22 N -0.809 5.809 23 O -0.578 6.578 24 S 0.322 5.678 25 C 0.144 3.856 26 C 0.056 3.944 27 H 0.266 0.734 28 H -0.016 1.016 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.435 0.565 35 H 0.215 0.785 36 H 0.421 0.579 37 H 0.419 0.581 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.021 0.979 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.804 -12.588 0.345 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.175 1.175 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.045 3.955 10 N -0.263 5.263 11 C -0.096 4.096 12 C -0.005 4.005 13 N -0.345 5.345 14 C 0.397 3.603 15 O -0.470 6.470 16 N -0.272 5.272 17 C -0.211 4.211 18 C -0.185 4.185 19 N -0.110 5.110 20 C -0.391 4.391 21 C 0.389 3.611 22 N -0.374 5.374 23 O -0.458 6.458 24 S 0.572 5.428 25 C 0.021 3.979 26 C -0.074 4.074 27 H 0.075 0.925 28 H 0.002 0.998 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.279 0.721 35 H 0.231 0.769 36 H 0.253 0.747 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 25.119 -13.709 1.552 28.658 hybrid contribution 0.780 2.093 -0.467 2.282 sum 25.899 -11.616 1.085 28.405 Atomic orbital electron populations 1.70051 1.08165 1.28046 1.52541 1.25853 0.95565 1.03162 0.94518 0.85728 0.79229 0.78726 0.79280 1.18718 1.21357 1.17548 1.21268 0.91129 0.93267 1.49770 0.94029 1.19937 0.94225 0.86079 0.95246 1.61805 1.12978 1.17031 1.34462 1.22625 0.87817 0.97128 1.02014 1.22092 1.00634 0.89839 0.87923 1.47364 1.09482 1.46175 1.31443 1.15949 0.81011 0.81127 0.82253 1.90875 1.75658 1.45796 1.34663 1.41756 1.03926 1.50089 1.31473 1.23486 0.94793 1.02454 1.00366 1.21926 0.87537 1.05217 1.03822 1.66656 1.36869 1.06162 1.01314 1.27461 0.97273 1.10692 1.03686 1.16696 0.83660 0.78779 0.81977 1.43340 1.06650 1.52746 1.34641 1.90898 1.58602 1.54402 1.41907 1.85645 1.03015 1.37278 1.16839 1.21715 0.78775 0.95269 1.02122 1.22361 1.01283 0.93487 0.90232 0.92525 0.99786 0.94429 0.95109 0.87846 0.86460 0.88620 0.72063 0.76886 0.74693 0.74791 0.89966 0.89059 0.96039 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.54 13.96 21.45 0.30 -57.24 16 2 C 0.01 0.36 5.47 84.66 0.46 0.82 16 3 Si 0.95 41.96 27.47 68.60 1.88 43.84 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 7 C -0.52 -28.05 8.96 25.60 0.23 -27.82 16 8 H 0.04 2.53 7.37 -2.91 -0.02 2.51 16 9 C 0.17 7.46 3.79 85.56 0.32 7.78 16 10 N -0.54 -18.97 4.62 -898.87 -4.15 -23.12 16 11 C 0.03 0.78 5.62 86.38 0.49 1.27 16 12 C 0.12 1.94 6.59 86.35 0.57 2.50 16 13 N -0.61 -13.86 3.00 -835.03 -2.51 -16.36 16 14 C 0.70 16.35 8.27 179.05 1.48 17.83 16 15 O -0.59 -18.02 13.37 -3.99 -0.05 -18.07 16 16 N -0.62 -9.88 5.32 -323.41 -1.72 -11.60 16 17 C 0.01 0.23 7.05 82.86 0.58 0.81 16 18 C -0.02 -0.33 11.28 84.21 0.95 0.62 16 19 N -0.39 -6.89 10.21 -190.10 -1.94 -8.84 16 20 C -0.12 -2.54 7.43 87.12 0.65 -1.90 16 21 C 0.61 13.10 8.06 86.48 0.70 13.79 16 22 N -0.81 -9.69 8.87 -176.29 -1.56 -11.26 16 23 O -0.58 -16.87 17.77 -4.29 -0.08 -16.95 16 24 S 0.32 7.71 20.11 -56.49 -1.14 6.57 16 25 C 0.14 4.05 6.61 86.51 0.57 4.62 16 26 C 0.06 1.92 5.47 86.54 0.47 2.40 16 27 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 28 H -0.02 -0.69 7.18 -2.39 -0.02 -0.71 16 29 H 0.04 1.56 7.40 -2.39 -0.02 1.54 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 2.13 7.99 -2.39 -0.02 2.12 16 32 H 0.12 0.85 5.64 -2.39 -0.01 0.83 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.44 3.42 6.31 -92.71 -0.58 2.84 16 35 H 0.21 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.42 3.36 8.47 -92.71 -0.79 2.57 16 37 H 0.42 3.33 8.93 -92.71 -0.83 2.50 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.64 7.09 -2.38 -0.02 2.63 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 3.01 6.67 -2.38 -0.02 2.99 16 Total: -1.00 -77.06 352.05 -4.62 -81.68 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -1.13 Total: 8.62 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 7.48 Total: 22.73 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -11.59 Total: -128.43 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.13 Total: -35.02 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.14 Total: 6.57 kcal Total: -77.06 -4.62 -81.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364159591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.686 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds