Wall clock time and date at job start Tue Mar 31 2020 22:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99668 * 2 1 4 4 H 1.48503 * 109.47023 * 90.00237 * 3 2 1 5 5 H 1.48508 * 109.47187 * 209.99903 * 3 2 1 6 6 H 1.48500 * 109.47550 * 329.99923 * 3 2 1 7 7 C 1.37868 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99919 * 184.88843 * 7 2 1 9 9 C 1.50696 * 120.00434 * 4.88048 * 7 2 1 10 10 H 1.09003 * 109.46754 * 334.81330 * 9 7 2 11 11 N 1.46496 * 109.47104 * 94.80965 * 9 7 2 12 12 C 1.34781 * 120.00035 * 205.00446 * 11 9 7 13 13 O 1.21582 * 120.00140 * 5.25452 * 12 11 9 14 14 N 1.34779 * 119.99719 * 185.25273 * 12 11 9 15 15 C 1.46925 * 120.62756 * 185.07342 * 14 12 11 16 16 C 1.52767 * 109.00949 * 233.58513 * 15 14 12 17 17 C 1.53044 * 109.37775 * 305.58938 * 16 15 14 18 18 O 1.42896 * 109.45217 * 301.22096 * 17 16 15 19 19 C 1.50703 * 109.45352 * 181.25772 * 17 16 15 20 20 N 1.34781 * 120.00201 * 84.93428 * 19 17 16 21 21 O 1.21278 * 120.00228 * 264.92781 * 19 17 16 22 22 C 1.53038 * 109.54023 * 61.24177 * 17 16 15 23 23 C 1.46921 * 120.63331 * 5.35511 * 14 12 11 24 24 C 1.53004 * 109.47446 * 214.81460 * 9 7 2 25 25 F 1.39897 * 109.47307 * 54.98878 * 24 9 7 26 26 F 1.39899 * 109.46893 * 174.98909 * 24 9 7 27 27 F 1.39900 * 109.47023 * 294.98645 * 24 9 7 28 28 H 0.97001 * 119.99834 * 174.91067 * 1 2 3 29 29 H 0.96998 * 120.00213 * 25.00254 * 11 9 7 30 30 H 1.09007 * 109.58916 * 353.41716 * 15 14 12 31 31 H 1.08995 * 109.58956 * 113.84720 * 15 14 12 32 32 H 1.08995 * 109.56541 * 185.55339 * 16 15 14 33 33 H 1.08997 * 109.36095 * 65.49722 * 16 15 14 34 34 H 0.96694 * 114.00042 * 300.06817 * 18 17 16 35 35 H 0.97001 * 119.99357 * 359.97438 * 20 19 17 36 36 H 0.97001 * 120.00464 * 179.97438 * 20 19 17 37 37 H 1.08999 * 109.49761 * 178.67574 * 22 17 16 38 38 H 1.09007 * 109.49766 * 58.58264 * 22 17 16 39 39 H 1.08998 * 109.58415 * 246.15461 * 23 14 12 40 40 H 1.08998 * 109.58505 * 6.43774 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 0.0792 9 6 1.2552 -2.4967 -0.1121 10 1 0.2384 -2.3637 0.2574 11 7 1.2139 -2.9177 -1.5147 12 6 0.2257 -3.7258 -1.9470 13 8 -0.6835 -4.0282 -1.1985 14 7 0.2453 -4.1986 -3.2089 15 6 -0.8785 -4.9888 -3.7298 16 6 -0.3442 -6.3074 -4.2861 17 6 0.7512 -6.0177 -5.3149 18 8 0.2158 -5.2109 -6.3658 19 6 1.2582 -7.3163 -5.8875 20 7 0.6160 -7.8926 -6.9229 21 8 2.2441 -7.8428 -5.4167 22 6 1.9050 -5.2739 -4.6384 23 6 1.3936 -3.9390 -4.0879 24 6 1.9648 -3.5662 0.7208 25 9 2.1057 -3.1146 2.0373 26 9 1.2087 -4.7433 0.7099 27 9 3.2286 -3.8187 0.1765 28 1 -0.4850 -0.8368 -0.0745 29 1 1.8978 -2.6148 -2.1323 30 1 -1.5855 -5.1929 -2.9256 31 1 -1.3769 -4.4350 -4.5254 32 1 -1.1551 -6.8576 -4.7633 33 1 0.0697 -6.9019 -3.4717 34 1 -0.5210 -5.6204 -6.8396 35 1 -0.1727 -7.4716 -7.2992 36 1 0.9424 -8.7282 -7.2917 37 1 2.6949 -5.0887 -5.3663 38 1 2.2977 -5.8783 -3.8206 39 1 1.0843 -3.2978 -4.9133 40 1 2.1844 -3.4483 -3.5205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364166188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:23 Heat of formation + Delta-G solvation = -299.788596 kcal Electronic energy + Delta-G solvation = -31773.781741 eV Core-core repulsion = 26786.182312 eV Total energy + Delta-G solvation = -4987.599430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.92443 -48.44326 -48.41415 -41.93582 -40.83449 -38.76463 -37.01561 -36.55602 -34.56505 -34.43323 -32.72481 -32.26823 -30.07513 -26.99905 -26.57275 -24.63681 -23.87245 -22.94950 -21.49623 -20.78877 -20.11380 -19.46810 -19.38671 -19.15321 -18.97106 -18.12056 -17.84705 -17.17497 -16.85620 -16.32068 -15.84987 -15.68912 -15.64899 -15.46334 -15.39141 -15.26060 -15.13868 -15.02973 -14.89109 -14.76100 -14.63484 -14.61121 -14.43986 -14.01069 -13.43767 -13.37014 -13.22603 -12.71734 -12.63536 -12.57416 -12.38642 -12.28000 -11.86174 -11.61730 -11.33705 -11.08841 -10.78262 -10.73326 -10.70286 -10.18518 -9.52073 -8.87489 -6.73481 1.38011 1.51549 1.60617 1.70692 1.86009 1.92292 2.20481 2.33693 2.48966 2.76982 3.05906 3.10972 3.35393 3.39579 3.42767 3.49187 3.67921 3.80204 3.94102 4.19902 4.25916 4.43479 4.49437 4.52331 4.61590 4.74843 4.82255 4.94812 5.14203 5.25563 5.52040 5.59822 5.78047 5.88527 5.98870 6.21229 6.26366 6.68840 7.02138 7.15326 7.17940 7.58090 8.49331 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.003683 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.440001 B = 7599.709538 C = 8211.455674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 1.126 2.874 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.282 1.282 7 C -0.616 4.616 8 H 0.074 0.926 9 C 0.235 3.765 10 H 0.062 0.938 11 N -0.723 5.723 12 C 0.690 3.310 13 O -0.632 6.632 14 N -0.628 5.628 15 C 0.133 3.867 16 C -0.147 4.147 17 C 0.137 3.863 18 O -0.538 6.538 19 C 0.499 3.501 20 N -0.826 5.826 21 O -0.582 6.582 22 C -0.106 4.106 23 C 0.118 3.882 24 C 0.435 3.565 25 F -0.187 7.187 26 F -0.200 7.200 27 F -0.188 7.188 28 H 0.261 0.739 29 H 0.402 0.598 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.418 0.582 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -10.617 -17.615 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.945 3.055 4 H -0.199 1.199 5 H -0.183 1.183 6 H -0.207 1.207 7 C -0.654 4.654 8 H 0.092 0.908 9 C 0.129 3.871 10 H 0.080 0.920 11 N -0.380 5.380 12 C 0.392 3.608 13 O -0.513 6.513 14 N -0.365 5.365 15 C 0.011 3.989 16 C -0.186 4.186 17 C 0.093 3.907 18 O -0.346 6.346 19 C 0.283 3.717 20 N -0.392 5.392 21 O -0.462 6.462 22 C -0.145 4.145 23 C -0.005 4.005 24 C 0.379 3.621 25 F -0.168 7.168 26 F -0.182 7.182 27 F -0.169 7.169 28 H 0.073 0.927 29 H 0.241 0.759 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.247 0.753 35 H 0.251 0.749 36 H 0.243 0.757 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.296 -9.052 -16.400 18.735 hybrid contribution -0.172 -2.659 -0.233 2.675 sum -0.468 -11.712 -16.633 20.348 Atomic orbital electron populations 1.70887 1.08160 1.30932 1.43369 1.27568 0.96015 1.06609 0.90091 0.82835 0.74412 0.70114 0.78090 1.19877 1.18302 1.20698 1.22009 0.95683 0.89977 1.57745 0.90776 1.19412 0.97763 0.89895 0.79983 0.91984 1.46425 1.29336 1.50721 1.11471 1.16484 0.82674 0.79185 0.82411 1.90825 1.38615 1.65537 1.56349 1.47366 1.21922 1.56415 1.10814 1.21358 0.87801 0.90749 0.99014 1.22460 0.99128 0.98158 0.98844 1.21050 0.94410 0.87214 0.88062 1.86702 1.54275 1.45609 1.48039 1.21447 0.82911 0.87038 0.80296 1.43631 1.32879 1.28218 1.34438 1.90770 1.27937 1.65854 1.61593 1.21688 0.96516 0.96013 1.00301 1.21658 0.87667 0.97090 0.94042 1.21924 0.77741 0.82683 0.79798 1.93076 1.95881 1.89210 1.38680 1.93124 1.76308 1.52195 1.96542 1.93055 1.43200 1.94929 1.85738 0.92746 0.75911 0.90724 0.88801 0.85917 0.92156 0.75277 0.74927 0.75660 0.88732 0.91343 0.88781 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.54 13.63 21.44 0.29 -51.25 16 2 C 0.00 0.09 5.45 84.65 0.46 0.55 16 3 Si 1.13 45.15 29.91 68.60 2.05 47.20 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.62 -31.61 7.97 25.60 0.20 -31.41 16 8 H 0.07 3.70 7.76 -2.91 -0.02 3.68 16 9 C 0.23 11.87 2.08 44.25 0.09 11.96 16 10 H 0.06 3.61 5.54 -2.39 -0.01 3.60 16 11 N -0.72 -31.91 4.77 -461.41 -2.20 -34.11 16 12 C 0.69 29.88 7.87 179.05 1.41 31.29 16 13 O -0.63 -32.21 14.58 -3.97 -0.06 -32.26 16 14 N -0.63 -20.14 2.98 -837.75 -2.50 -22.64 16 15 C 0.13 3.33 6.18 86.22 0.53 3.86 16 16 C -0.15 -2.70 5.05 30.53 0.15 -2.55 16 17 C 0.14 2.40 0.92 -11.51 -0.01 2.39 16 18 O -0.54 -6.31 11.60 -148.98 -1.73 -8.03 16 19 C 0.50 9.13 7.00 87.66 0.61 9.74 16 20 N -0.83 -6.16 8.78 -173.53 -1.52 -7.69 16 21 O -0.58 -16.83 16.96 -3.02 -0.05 -16.88 16 22 C -0.11 -2.49 4.62 30.67 0.14 -2.35 16 23 C 0.12 3.05 6.11 86.36 0.53 3.57 16 24 C 0.43 21.01 2.83 71.98 0.20 21.22 16 25 F -0.19 -9.12 16.89 44.97 0.76 -8.36 16 26 F -0.20 -9.83 16.05 44.97 0.72 -9.11 16 27 F -0.19 -8.44 16.93 44.97 0.76 -7.67 16 28 H 0.26 15.74 6.46 -92.71 -0.60 15.14 16 29 H 0.40 15.87 6.19 -92.71 -0.57 15.30 16 30 H 0.07 2.25 7.00 -2.38 -0.02 2.23 16 31 H 0.09 1.87 7.81 -2.39 -0.02 1.86 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.40 0.51 7.58 -74.06 -0.56 -0.05 16 35 H 0.42 -0.25 7.33 -92.71 -0.68 -0.93 16 36 H 0.41 2.55 8.93 -92.71 -0.83 1.72 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 1.95 7.92 -2.38 -0.02 1.93 16 39 H 0.09 2.15 7.81 -2.39 -0.02 2.13 16 40 H 0.08 2.11 5.74 -2.39 -0.01 2.10 16 Total: -1.00 -77.79 340.96 -0.44 -78.23 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -1.30 Total: 24.28 kcal Atomic # 6 Polarization: 43.95 SS G_CDS: 4.33 Total: 48.28 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -5.93 Total: -115.68 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -1.84 Total: -57.18 kcal Atomic # 9 Polarization: -27.38 SS G_CDS: 2.24 Total: -25.14 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.05 Total: 47.20 kcal Total: -77.79 -0.44 -78.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364166188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.561 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds