Wall clock time and date at job start Tue Mar 31 2020 22:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47516 * 2 1 4 4 C 1.50707 * 109.47204 * 239.99615 * 2 1 3 5 5 H 1.08001 * 119.99608 * 240.00589 * 4 2 1 6 6 C 1.37871 * 119.99869 * 60.00398 * 4 2 1 7 7 N 1.31520 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47164 * 59.99861 * 8 6 4 10 10 H 1.48500 * 109.47529 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46969 * 300.00104 * 8 6 4 12 12 C 1.53003 * 109.46517 * 119.99916 * 2 1 3 13 13 S 1.81394 * 109.47387 * 299.99470 * 12 2 1 14 14 O 1.42109 * 110.53807 * 68.37945 * 13 12 2 15 15 O 1.42098 * 110.54422 * 291.62974 * 13 12 2 16 16 N 1.65602 * 104.44973 * 179.97438 * 13 12 2 17 17 C 1.46498 * 119.99612 * 65.28269 * 16 13 12 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.32610 * 125.18713 * 90.02106 * 18 17 16 20 20 C 1.32829 * 109.75764 * 179.97438 * 19 18 17 21 21 N 1.33816 * 132.50267 * 180.02562 * 20 19 18 22 22 C 1.31346 * 120.86444 * 179.97438 * 21 20 19 23 23 C 1.40044 * 120.31480 * 0.02562 * 22 21 20 24 24 C 1.35783 * 119.23900 * 359.97438 * 23 22 21 25 25 N 1.35984 * 119.02040 * 0.02562 * 24 23 22 26 26 N 1.31188 * 125.18052 * 269.72158 * 18 17 16 27 27 H 1.08994 * 109.47224 * 300.00735 * 1 2 3 28 28 H 1.09008 * 109.46641 * 59.99898 * 1 2 3 29 29 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47371 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47114 * 299.99832 * 3 2 1 32 32 H 1.08998 * 109.47012 * 59.99397 * 3 2 1 33 33 H 0.97007 * 119.99442 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.46641 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47327 * 60.00523 * 12 2 1 36 36 H 0.97001 * 119.99942 * 244.99793 * 16 13 12 37 37 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 38 38 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 39 39 H 1.07998 * 119.84783 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.38570 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.49213 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5205 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0278 -0.0183 2.8543 15 8 2.0480 1.4100 2.8544 16 7 2.0528 -0.7409 3.9937 17 6 3.5008 -0.7933 4.2096 18 6 3.7836 -1.3168 5.5943 19 7 3.9484 -2.5943 5.9093 20 6 4.1822 -2.7091 7.2118 21 7 4.4097 -3.7664 7.9998 22 6 4.6182 -3.6144 9.2877 23 6 4.6053 -2.3363 9.8599 24 6 4.3753 -1.2574 9.0682 25 7 4.1629 -1.4482 7.7386 26 7 3.9097 -0.5776 6.6707 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7083 1.1607 -3.4845 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2493 36 1 1.4555 -1.2151 4.5930 37 1 3.9545 -1.4547 3.4715 38 1 3.9200 0.2076 4.1070 39 1 4.7998 -4.4793 9.9085 40 1 4.7770 -2.2100 10.9186 41 1 4.3612 -0.2625 9.4881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364879997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:40 Heat of formation + Delta-G solvation = 74.000321 kcal Electronic energy + Delta-G solvation = -26908.631292 eV Core-core repulsion = 22954.142928 eV Total energy + Delta-G solvation = -3954.488363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.33876 -39.37598 -36.59271 -36.26000 -35.61339 -35.27905 -34.79221 -31.69886 -31.63442 -31.11442 -27.36771 -26.60715 -25.69194 -25.20503 -25.04726 -24.08911 -21.54127 -19.65591 -18.93273 -18.82145 -18.56034 -17.44222 -17.08317 -16.73472 -16.15201 -15.86364 -15.40097 -15.09579 -14.74853 -14.58136 -14.14192 -13.81690 -13.54878 -13.18839 -13.10384 -12.95869 -12.90368 -12.49767 -12.47288 -12.07755 -11.81036 -11.45338 -11.09264 -11.03333 -10.93422 -10.68436 -10.58496 -10.48682 -10.39540 -10.25515 -10.14462 -10.08633 -9.69821 -9.62579 -9.32623 -9.27402 -8.66865 -8.37326 -6.00872 -4.12772 -0.09364 0.20860 0.80189 1.42176 2.02816 2.78174 2.91522 3.26609 3.29861 3.35054 3.37113 3.43488 3.75976 4.01993 4.26951 4.31042 4.40416 4.53233 4.74968 4.77193 5.07313 5.14770 5.24435 5.33889 5.54733 5.63126 5.69942 5.75436 5.80668 5.87623 6.40004 6.72729 6.81979 6.91695 6.93694 6.95716 7.07761 7.34137 7.50201 7.52690 7.70553 8.00632 8.11912 8.35266 8.85618 9.52567 11.00417 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002492 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.838406 B =11234.654212 C =11850.790192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.594 3.406 14 O -0.959 6.959 15 O -0.960 6.960 16 N -1.125 6.125 17 C 0.210 3.790 18 C 0.274 3.726 19 N -0.508 5.508 20 C 0.438 3.562 21 N -0.452 5.452 22 C 0.206 3.794 23 C -0.224 4.224 24 C 0.174 3.826 25 N -0.328 5.328 26 N -0.311 5.311 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.415 0.585 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.192 0.808 40 H 0.176 0.824 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -5.959 25.918 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.692 3.308 14 O -0.949 6.949 15 O -0.950 6.950 16 N -0.882 5.882 17 C 0.081 3.919 18 C -0.009 4.009 19 N -0.240 5.240 20 C 0.078 3.922 21 N -0.166 5.166 22 C 0.019 3.981 23 C -0.249 4.249 24 C 0.036 3.964 25 N -0.108 5.108 26 N -0.143 5.143 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.247 0.753 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.208 0.792 40 H 0.193 0.807 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.798 -5.165 24.759 26.467 hybrid contribution 0.558 -0.652 -0.044 0.859 sum 8.356 -5.817 24.715 26.730 Atomic orbital electron populations 1.22285 0.96913 1.00714 1.02322 1.17939 0.92852 0.92228 0.89002 1.22283 0.99777 0.97768 1.02383 1.20907 1.31759 1.12093 0.89337 0.92250 1.24937 0.94905 0.94991 0.98928 1.69798 1.36249 1.22602 1.23561 0.86588 0.79140 0.79719 0.82115 1.20271 1.21241 1.20275 1.30538 1.11417 1.13101 1.16408 1.05746 0.74512 0.75103 0.75471 1.93566 1.29165 1.86555 1.85657 1.93548 1.78077 1.37911 1.85423 1.55908 1.12493 1.71509 1.48309 1.19576 0.82417 1.02873 0.87022 1.24412 0.93662 0.86546 0.96279 1.70793 1.26977 1.18811 1.07390 1.22818 0.96873 0.81510 0.91037 1.68035 1.16056 1.27072 1.05408 1.23626 0.87016 0.97998 0.89423 1.21990 1.07986 0.92089 1.02859 1.22225 0.91904 1.02839 0.79419 1.48900 1.44280 1.09538 1.08048 1.78695 1.30292 1.12317 0.93032 0.95394 0.88618 0.94387 0.94373 0.88643 0.95307 0.92708 0.86173 0.85872 0.75266 0.87888 0.87054 0.79166 0.80698 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.02 7.77 37.15 0.29 -3.73 16 4 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.58 -11.20 5.02 37.16 0.19 -11.02 16 13 S 2.59 48.20 4.49 -107.50 -0.48 47.72 16 14 O -0.96 -20.37 15.70 -57.54 -0.90 -21.27 16 15 O -0.96 -19.91 15.11 -57.54 -0.87 -20.78 16 16 N -1.13 -16.54 5.88 -11.66 -0.07 -16.60 16 17 C 0.21 2.78 6.76 -5.19 -0.04 2.75 16 18 C 0.27 3.86 7.49 -157.01 -1.18 2.68 16 19 N -0.51 -7.53 11.25 -11.80 -0.13 -7.67 16 20 C 0.44 5.59 8.99 -323.14 -2.91 2.68 16 21 N -0.45 -4.55 10.48 -13.82 -0.14 -4.70 16 22 C 0.21 0.89 11.27 -17.08 -0.19 0.70 16 23 C -0.22 -0.55 10.07 -39.78 -0.40 -0.95 16 24 C 0.17 0.96 11.32 -16.59 -0.19 0.77 16 25 N -0.33 -3.60 3.91 -13.84 -0.05 -3.66 16 26 N -0.31 -4.24 12.78 32.39 0.41 -3.83 16 27 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 28 H 0.10 2.55 6.07 -51.92 -0.32 2.23 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 32 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 35 H 0.12 2.18 8.14 -51.92 -0.42 1.75 16 36 H 0.41 5.68 8.61 -34.47 -0.30 5.39 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.11 1.40 7.68 -51.93 -0.40 1.00 16 39 H 0.19 -0.02 8.06 -52.49 -0.42 -0.45 16 40 H 0.18 -0.33 8.06 -52.49 -0.42 -0.76 16 41 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -37.50 350.23 -10.86 -48.37 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.82 Total: 4.87 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -4.58 Total: -19.80 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.53 Total: -60.12 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.77 Total: -42.05 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 48.20 SS G_CDS: -0.48 Total: 47.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.50 -10.86 -48.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364879997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.369 kcal (2) G-P(sol) polarization free energy of solvation -37.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds