Wall clock time and date at job start Tue Mar 31 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47516 * 2 1 4 4 C 1.50707 * 109.47204 * 239.99615 * 2 1 3 5 5 H 1.08001 * 119.99608 * 240.00589 * 4 2 1 6 6 C 1.37871 * 119.99869 * 60.00398 * 4 2 1 7 7 N 1.31520 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47164 * 59.99861 * 8 6 4 10 10 H 1.48500 * 109.47529 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46969 * 300.00104 * 8 6 4 12 12 C 1.53003 * 109.46517 * 119.99916 * 2 1 3 13 13 S 1.81394 * 109.47387 * 299.99470 * 12 2 1 14 14 O 1.42109 * 110.53807 * 68.37945 * 13 12 2 15 15 O 1.42098 * 110.54422 * 291.62974 * 13 12 2 16 16 N 1.65602 * 104.44973 * 179.97438 * 13 12 2 17 17 C 1.46498 * 119.99612 * 65.28269 * 16 13 12 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.32610 * 125.18713 * 90.02106 * 18 17 16 20 20 C 1.32829 * 109.75764 * 179.97438 * 19 18 17 21 21 N 1.33816 * 132.50267 * 180.02562 * 20 19 18 22 22 C 1.31346 * 120.86444 * 179.97438 * 21 20 19 23 23 C 1.40044 * 120.31480 * 0.02562 * 22 21 20 24 24 C 1.35783 * 119.23900 * 359.97438 * 23 22 21 25 25 N 1.35984 * 119.02040 * 0.02562 * 24 23 22 26 26 N 1.31188 * 125.18052 * 269.72158 * 18 17 16 27 27 H 1.08994 * 109.47224 * 300.00735 * 1 2 3 28 28 H 1.09008 * 109.46641 * 59.99898 * 1 2 3 29 29 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47371 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47114 * 299.99832 * 3 2 1 32 32 H 1.08998 * 109.47012 * 59.99397 * 3 2 1 33 33 H 0.97007 * 119.99442 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.46641 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47327 * 60.00523 * 12 2 1 36 36 H 0.97001 * 119.99942 * 244.99793 * 16 13 12 37 37 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 38 38 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 39 39 H 1.07998 * 119.84783 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.38570 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.49213 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5205 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0278 -0.0183 2.8543 15 8 2.0480 1.4100 2.8544 16 7 2.0528 -0.7409 3.9937 17 6 3.5008 -0.7933 4.2096 18 6 3.7836 -1.3168 5.5943 19 7 3.9484 -2.5943 5.9093 20 6 4.1822 -2.7091 7.2118 21 7 4.4097 -3.7664 7.9998 22 6 4.6182 -3.6144 9.2877 23 6 4.6053 -2.3363 9.8599 24 6 4.3753 -1.2574 9.0682 25 7 4.1629 -1.4482 7.7386 26 7 3.9097 -0.5776 6.6707 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7083 1.1607 -3.4845 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2493 36 1 1.4555 -1.2151 4.5930 37 1 3.9545 -1.4547 3.4715 38 1 3.9200 0.2076 4.1070 39 1 4.7998 -4.4793 9.9085 40 1 4.7770 -2.2100 10.9186 41 1 4.3612 -0.2625 9.4881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364879997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:39 Heat of formation + Delta-G solvation = 47.198586 kcal Electronic energy + Delta-G solvation = -26909.793502 eV Core-core repulsion = 22954.142928 eV Total energy + Delta-G solvation = -3955.650574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.05685 -39.99634 -38.17308 -38.10996 -36.97230 -36.54363 -35.50698 -33.61048 -32.35224 -31.86108 -28.42186 -28.17074 -27.65913 -27.21481 -25.61172 -24.74124 -22.40160 -21.39469 -20.37196 -19.51568 -19.29453 -18.80923 -17.94595 -17.87467 -17.45368 -16.96231 -16.90878 -16.61010 -15.99425 -15.58914 -15.10329 -15.01694 -14.62920 -14.52381 -14.39872 -14.06343 -13.88102 -13.81198 -13.75585 -13.42664 -13.15527 -13.06937 -12.86533 -12.84946 -12.76487 -12.47950 -12.16501 -12.14591 -11.95948 -11.53442 -11.47516 -11.36978 -11.03112 -10.81685 -10.78352 -10.44991 -10.38448 -9.96308 -8.00594 -6.18791 -0.74577 -0.50875 -0.36784 0.80958 1.18557 1.47353 1.47651 1.54751 1.91604 2.15045 2.36812 2.46360 2.69248 2.83356 3.21046 3.24817 3.36806 3.50597 3.88418 3.98155 4.10534 4.16321 4.22849 4.39245 4.52109 4.56375 4.63250 4.77861 4.89540 4.90622 4.96364 5.02269 5.02800 5.11783 5.34438 5.41999 5.53638 5.67634 5.81536 6.00760 6.14420 6.34729 6.36727 6.73003 6.85793 7.49229 8.99097 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002492 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.838406 B =11234.654212 C =11850.790192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.516 4.516 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.618 3.382 14 O -0.988 6.988 15 O -0.982 6.982 16 N -1.112 6.112 17 C 0.204 3.796 18 C 0.261 3.739 19 N -0.550 5.550 20 C 0.419 3.581 21 N -0.493 5.493 22 C 0.215 3.785 23 C -0.184 4.184 24 C 0.143 3.857 25 N -0.332 5.332 26 N -0.340 5.340 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.261 0.739 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.420 0.580 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.240 0.760 40 H 0.233 0.767 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.046 -7.492 29.096 31.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.717 4.717 13 S 2.716 3.284 14 O -0.978 6.978 15 O -0.972 6.972 16 N -0.871 5.871 17 C 0.075 3.925 18 C -0.021 4.021 19 N -0.285 5.285 20 C 0.059 3.941 21 N -0.210 5.210 22 C 0.033 3.967 23 C -0.208 4.208 24 C 0.008 3.992 25 N -0.112 5.112 26 N -0.173 5.173 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.254 0.746 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.256 0.744 40 H 0.250 0.750 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.411 -6.706 28.001 30.292 hybrid contribution 0.138 -0.263 -0.686 0.748 sum 9.549 -6.970 27.315 29.763 Atomic orbital electron populations 1.22231 0.97877 1.00512 1.01364 1.17934 0.92280 0.92307 0.90770 1.22216 1.00097 0.98159 1.01408 1.21268 1.31634 1.12297 0.90299 0.91728 1.25669 0.95237 0.95675 1.01640 1.69944 1.37157 1.23706 1.23848 0.85676 0.78768 0.78657 0.78879 1.19871 1.21412 1.19658 1.30468 1.13132 1.13479 1.14646 1.04762 0.73530 0.74635 0.75510 1.93519 1.31167 1.86954 1.86183 1.93513 1.78319 1.39538 1.85853 1.55433 1.13604 1.71037 1.47066 1.19781 0.81089 1.03672 0.87934 1.24291 0.94748 0.86682 0.96426 1.70635 1.29030 1.19379 1.09419 1.22980 0.97325 0.82699 0.91070 1.68148 1.18643 1.26540 1.07677 1.24680 0.83452 1.00706 0.87911 1.22711 1.03204 0.90047 1.04801 1.23183 0.92731 1.05647 0.77657 1.48939 1.44447 1.08574 1.09221 1.78497 1.31435 1.13621 0.93768 0.94911 0.90982 0.94144 0.93704 0.91095 0.94767 0.92965 0.83666 0.84167 0.74564 0.85947 0.86742 0.74392 0.75037 0.76993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.15 7.77 71.98 0.56 -7.59 16 2 C 0.07 3.35 0.52 -52.93 -0.03 3.32 16 3 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 4 C -0.52 -26.91 8.01 25.60 0.21 -26.71 16 5 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 6 C 0.02 0.91 5.15 84.65 0.44 1.35 16 7 N -0.91 -50.63 9.35 21.45 0.20 -50.43 16 8 Si 0.95 42.58 29.54 68.60 2.03 44.60 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 C -0.58 -22.05 5.02 71.98 0.36 -21.69 16 13 S 2.62 96.83 4.49 -56.49 -0.25 96.57 16 14 O -0.99 -42.13 15.70 -127.65 -2.00 -44.13 16 15 O -0.98 -40.76 15.11 -127.65 -1.93 -42.68 16 16 N -1.11 -32.52 5.88 -190.79 -1.12 -33.64 16 17 C 0.20 5.39 6.76 85.63 0.58 5.97 16 18 C 0.26 7.52 7.49 138.69 1.04 8.56 16 19 N -0.55 -16.73 11.25 -191.24 -2.15 -18.89 16 20 C 0.42 10.60 8.99 261.60 2.35 12.95 16 21 N -0.49 -9.20 10.48 -197.64 -2.07 -11.27 16 22 C 0.22 1.00 11.27 85.20 0.96 1.96 16 23 C -0.18 0.01 10.07 22.14 0.22 0.23 16 24 C 0.14 1.16 11.32 83.48 0.94 2.10 16 25 N -0.33 -7.04 3.91 -197.70 -0.77 -7.82 16 26 N -0.34 -9.36 12.78 -51.44 -0.66 -10.02 16 27 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 28 H 0.07 3.95 6.07 -2.38 -0.01 3.93 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 32 H 0.03 1.61 5.46 -2.39 -0.01 1.59 16 33 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 34 H 0.15 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 36 H 0.42 11.59 8.61 -96.74 -0.83 10.76 16 37 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.11 2.90 7.68 -2.39 -0.02 2.88 16 39 H 0.24 -1.43 8.06 -2.91 -0.02 -1.46 16 40 H 0.23 -2.65 8.06 -2.91 -0.02 -2.68 16 41 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -85.63 350.23 -0.29 -85.92 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.25 Total: 18.71 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 8.19 Total: -26.93 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -6.57 Total: -132.06 kcal Atomic # 8 Polarization: -82.89 SS G_CDS: -3.93 Total: -86.82 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 96.83 SS G_CDS: -0.25 Total: 96.57 kcal Total: -85.63 -0.29 -85.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364879997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.119 kcal (2) G-P(sol) polarization free energy of solvation -85.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds