Wall clock time and date at job start Tue Mar 31 2020 22:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47236 * 2 1 4 4 N 1.29500 * 126.14146 * 90.04107 * 3 2 1 5 5 N 1.26251 * 116.58114 * 179.70363 * 4 3 2 6 6 C 1.29889 * 117.66266 * 0.49426 * 5 4 3 7 7 N 1.39078 * 125.66013 * 179.79843 * 6 5 4 8 8 C 1.34773 * 119.99768 * 359.69992 * 7 6 5 9 9 O 1.21587 * 120.00397 * 354.91110 * 8 7 6 10 10 N 1.34780 * 120.00013 * 174.90538 * 8 7 6 11 11 C 1.46956 * 120.59323 * 5.06347 * 10 8 7 12 12 C 1.53377 * 108.63407 * 235.24468 * 11 10 8 13 13 N 1.46959 * 108.63400 * 310.57615 * 12 11 10 14 14 C 1.34782 * 120.59573 * 235.19974 * 13 12 11 15 15 O 1.21685 * 119.99379 * 5.23331 * 14 13 12 16 16 C 1.46369 * 120.00242 * 185.22368 * 14 13 12 17 17 H 1.07994 * 120.00076 * 354.98548 * 16 14 13 18 18 C 1.40044 * 119.99865 * 174.98141 * 16 14 13 19 19 N 1.30680 * 120.00250 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00118 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47084 * 270.00152 * 20 18 16 22 22 H 1.48499 * 109.47148 * 30.00097 * 20 18 16 23 23 H 1.48500 * 109.47255 * 150.00354 * 20 18 16 24 24 C 1.46968 * 118.81346 * 55.47772 * 13 12 11 25 25 C 1.46967 * 120.59163 * 185.08133 * 10 8 7 26 26 S 1.71314 * 108.68732 * 359.54378 * 6 5 4 27 27 H 1.09000 * 109.46933 * 60.00109 * 1 2 3 28 28 H 1.09004 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47328 * 300.00175 * 1 2 3 30 30 H 1.08999 * 109.47328 * 239.99825 * 2 1 3 31 31 H 1.09000 * 109.46933 * 119.99891 * 2 1 3 32 32 H 0.96996 * 120.00400 * 179.69230 * 7 6 5 33 33 H 1.09000 * 109.61587 * 115.50220 * 11 10 8 34 34 H 1.09004 * 109.60976 * 354.98321 * 11 10 8 35 35 H 1.09004 * 109.61272 * 190.82726 * 12 11 10 36 36 H 1.09004 * 109.60756 * 70.31821 * 12 11 10 37 37 H 0.97000 * 119.99785 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.60905 * 64.26560 * 24 13 12 39 39 H 1.09003 * 109.61062 * 184.77697 * 24 13 12 40 40 H 1.09004 * 109.60847 * 244.49550 * 25 10 8 41 41 H 1.08994 * 109.61485 * 4.83734 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2877 2.1406 1.0458 5 7 2.7080 3.3125 0.8361 6 6 2.8375 3.6948 -0.3985 7 7 3.2804 4.9446 -0.8180 8 6 3.6126 5.8820 0.0916 9 8 3.4381 5.6689 1.2758 10 7 4.1384 7.0557 -0.3115 11 6 4.2528 7.3720 -1.7421 12 6 5.7149 7.7157 -2.0527 13 7 6.1845 8.7019 -1.0695 14 6 6.7112 9.8752 -1.4726 15 8 6.7143 10.1667 -2.6540 16 6 7.2791 10.7988 -0.4893 17 1 7.2040 10.5782 0.5652 18 6 7.9201 11.9686 -0.9160 19 7 8.0106 12.2359 -2.1919 20 14 8.6455 13.1470 0.3388 21 1 7.6198 14.1476 0.7291 22 1 9.0778 12.3873 1.5393 23 1 9.8155 13.8431 -0.2543 24 6 6.0753 8.3832 0.3611 25 6 4.6081 8.0419 0.6717 26 16 2.3792 2.4017 -1.4245 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3502 5.1417 -1.7652 33 1 3.6180 8.2255 -1.9800 34 1 3.9464 6.5089 -2.3332 35 1 5.7868 8.1363 -3.0557 36 1 6.3245 6.8145 -1.9866 37 1 8.4543 13.0463 -2.4874 38 1 6.7099 7.5285 0.5949 39 1 6.3852 9.2448 0.9525 40 1 3.9985 8.9432 0.6057 41 1 4.5334 7.6225 1.6750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365027192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:26 Heat of formation + Delta-G solvation = 31.548368 kcal Electronic energy + Delta-G solvation = -26617.518620 eV Core-core repulsion = 22661.189402 eV Total energy + Delta-G solvation = -3956.329218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53640 -40.41867 -38.26167 -36.14163 -35.57632 -34.40880 -33.14412 -32.59219 -31.04708 -29.82043 -27.68719 -26.44333 -25.99461 -24.04928 -23.36163 -22.63442 -21.18151 -20.32725 -19.73027 -18.54574 -18.16788 -17.24882 -16.51380 -16.33924 -15.83192 -15.36759 -15.20747 -14.98372 -14.67054 -14.40861 -14.31484 -14.17996 -14.03962 -13.68324 -13.43358 -12.97894 -12.65333 -12.23722 -12.16114 -11.79442 -11.69649 -11.59520 -11.47804 -11.25420 -11.08972 -11.03093 -10.82185 -10.73937 -10.47160 -10.32190 -10.18101 -9.88673 -9.86584 -9.07253 -8.95652 -8.69638 -7.74191 -7.36799 -6.31276 -4.76869 0.25436 0.26688 0.93565 2.20930 2.40601 3.07995 3.11022 3.15929 3.18520 3.35463 3.90862 3.98764 4.33130 4.43639 4.45906 4.63063 4.74626 4.90544 4.97510 5.15091 5.28248 5.30202 5.36781 5.44637 5.51350 5.52293 5.70759 5.73521 5.78716 5.83071 5.96503 6.19811 6.20292 6.30715 6.44089 6.65379 7.34974 7.39458 7.51628 7.97556 8.19184 8.26525 8.53886 8.91193 9.25094 10.43312 10.62227 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036612 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.602393 B =12842.244014 C =13387.742032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C 0.001 3.999 4 N -0.224 5.224 5 N -0.271 5.271 6 C 0.257 3.743 7 N -0.637 5.637 8 C 0.700 3.300 9 O -0.530 6.530 10 N -0.612 5.612 11 C 0.096 3.904 12 C 0.107 3.893 13 N -0.642 5.642 14 C 0.559 3.441 15 O -0.576 6.576 16 C -0.544 4.544 17 H 0.074 0.926 18 C 0.088 3.912 19 N -0.766 5.766 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.264 1.264 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.113 3.887 26 S 0.096 5.904 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.270 0.730 38 H 0.049 0.951 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 -20.565 -0.359 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 C -0.282 4.282 4 N -0.060 5.060 5 N -0.115 5.115 6 C -0.114 4.114 7 N -0.294 5.294 8 C 0.399 3.601 9 O -0.401 6.401 10 N -0.350 5.350 11 C -0.029 4.029 12 C -0.019 4.019 13 N -0.381 5.381 14 C 0.366 3.634 15 O -0.459 6.459 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.395 5.395 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.188 1.188 23 H -0.204 1.204 24 C -0.016 4.016 25 C -0.010 4.010 26 S 0.335 5.665 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.167 -20.144 0.037 23.533 hybrid contribution 0.446 0.789 -0.021 0.907 sum -11.720 -19.355 0.016 22.627 Atomic orbital electron populations 1.21803 0.93289 1.02782 1.02916 1.20127 0.96780 0.86293 1.04694 1.29933 1.06731 1.03202 0.88357 1.71427 1.10555 0.98085 1.25908 1.71578 1.18309 1.07244 1.14353 1.25587 1.00451 0.92472 0.92875 1.42319 1.67318 1.08808 1.10948 1.15826 0.79265 0.80194 0.84768 1.91064 1.57004 1.78043 1.13944 1.47336 1.63625 1.15920 1.08071 1.22235 1.00124 1.00463 0.80049 1.21481 0.91052 0.92850 0.96495 1.48197 1.67403 1.18641 1.03883 1.18294 0.77169 0.78866 0.89110 1.90594 1.61310 1.75133 1.18846 1.20955 1.38547 1.05322 0.93164 0.90774 1.25732 0.94365 0.97753 0.95401 1.70004 1.31873 1.22704 1.14872 0.86368 0.78914 0.80398 0.81129 1.19632 1.18772 1.20419 1.21959 0.93274 1.01561 0.84854 1.22250 0.96240 0.90428 0.92101 1.84729 1.63797 1.06390 1.11617 0.92299 0.91103 0.91748 0.89266 0.88142 0.73881 0.90122 0.91323 0.88261 0.93425 0.91961 0.93269 0.87318 0.90737 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.04 -0.22 6.56 -27.88 -0.18 -0.40 16 3 C 0.00 0.01 7.05 -13.26 -0.09 -0.09 16 4 N -0.22 -3.18 11.65 33.58 0.39 -2.79 16 5 N -0.27 -4.43 9.75 29.97 0.29 -4.14 16 6 C 0.26 3.38 8.14 -87.06 -0.71 2.67 16 7 N -0.64 -7.87 5.32 -17.32 -0.09 -7.96 16 8 C 0.70 10.98 8.26 -86.92 -0.72 10.26 16 9 O -0.53 -10.34 14.46 5.29 0.08 -10.26 16 10 N -0.61 -9.08 2.95 -177.94 -0.52 -9.60 16 11 C 0.10 1.26 6.59 -3.60 -0.02 1.24 16 12 C 0.11 1.82 6.60 -3.60 -0.02 1.79 16 13 N -0.64 -13.45 2.94 -173.87 -0.51 -13.96 16 14 C 0.56 14.90 7.62 -12.99 -0.10 14.80 16 15 O -0.58 -17.52 14.45 5.20 0.08 -17.45 16 16 C -0.54 -14.41 8.86 -35.64 -0.32 -14.73 16 17 H 0.07 1.78 5.66 -52.49 -0.30 1.48 16 18 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 19 N -0.77 -22.01 11.84 55.55 0.66 -21.35 16 20 Si 0.91 19.34 29.56 -169.99 -5.02 14.31 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.11 1.92 6.51 -3.36 -0.02 1.90 16 25 C 0.11 1.77 6.60 -3.36 -0.02 1.75 16 26 S 0.10 0.83 23.31 -107.50 -2.51 -1.67 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.42 3.70 6.27 -40.82 -0.26 3.44 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.63 5.55 -51.93 -0.29 0.34 16 35 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 1.97 5.34 -51.93 -0.28 1.70 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.51 7.02 -51.93 -0.36 1.14 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -37.53 354.13 -8.55 -46.08 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.78 Total: 2.40 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: -1.94 Total: 21.05 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.21 Total: -59.80 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: 0.15 Total: -27.71 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.53 -8.55 -46.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365027192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.628 kcal (2) G-P(sol) polarization free energy of solvation -37.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds