Wall clock time and date at job start Tue Mar 31 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47236 * 2 1 4 4 N 1.29500 * 126.14146 * 90.04107 * 3 2 1 5 5 N 1.26251 * 116.58114 * 179.70363 * 4 3 2 6 6 C 1.29889 * 117.66266 * 0.49426 * 5 4 3 7 7 N 1.39078 * 125.66013 * 179.79843 * 6 5 4 8 8 C 1.34773 * 119.99768 * 359.69992 * 7 6 5 9 9 O 1.21587 * 120.00397 * 354.91110 * 8 7 6 10 10 N 1.34780 * 120.00013 * 174.90538 * 8 7 6 11 11 C 1.46956 * 120.59323 * 5.06347 * 10 8 7 12 12 C 1.53377 * 108.63407 * 235.24468 * 11 10 8 13 13 N 1.46959 * 108.63400 * 310.57615 * 12 11 10 14 14 C 1.34782 * 120.59573 * 235.19974 * 13 12 11 15 15 O 1.21685 * 119.99379 * 5.23331 * 14 13 12 16 16 C 1.46369 * 120.00242 * 185.22368 * 14 13 12 17 17 H 1.07994 * 120.00076 * 354.98548 * 16 14 13 18 18 C 1.40044 * 119.99865 * 174.98141 * 16 14 13 19 19 N 1.30680 * 120.00250 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00118 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47084 * 270.00152 * 20 18 16 22 22 H 1.48499 * 109.47148 * 30.00097 * 20 18 16 23 23 H 1.48500 * 109.47255 * 150.00354 * 20 18 16 24 24 C 1.46968 * 118.81346 * 55.47772 * 13 12 11 25 25 C 1.46967 * 120.59163 * 185.08133 * 10 8 7 26 26 S 1.71314 * 108.68732 * 359.54378 * 6 5 4 27 27 H 1.09000 * 109.46933 * 60.00109 * 1 2 3 28 28 H 1.09004 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47328 * 300.00175 * 1 2 3 30 30 H 1.08999 * 109.47328 * 239.99825 * 2 1 3 31 31 H 1.09000 * 109.46933 * 119.99891 * 2 1 3 32 32 H 0.96996 * 120.00400 * 179.69230 * 7 6 5 33 33 H 1.09000 * 109.61587 * 115.50220 * 11 10 8 34 34 H 1.09004 * 109.60976 * 354.98321 * 11 10 8 35 35 H 1.09004 * 109.61272 * 190.82726 * 12 11 10 36 36 H 1.09004 * 109.60756 * 70.31821 * 12 11 10 37 37 H 0.97000 * 119.99785 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.60905 * 64.26560 * 24 13 12 39 39 H 1.09003 * 109.61062 * 184.77697 * 24 13 12 40 40 H 1.09004 * 109.60847 * 244.49550 * 25 10 8 41 41 H 1.08994 * 109.61485 * 4.83734 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2877 2.1406 1.0458 5 7 2.7080 3.3125 0.8361 6 6 2.8375 3.6948 -0.3985 7 7 3.2804 4.9446 -0.8180 8 6 3.6126 5.8820 0.0916 9 8 3.4381 5.6689 1.2758 10 7 4.1384 7.0557 -0.3115 11 6 4.2528 7.3720 -1.7421 12 6 5.7149 7.7157 -2.0527 13 7 6.1845 8.7019 -1.0695 14 6 6.7112 9.8752 -1.4726 15 8 6.7143 10.1667 -2.6540 16 6 7.2791 10.7988 -0.4893 17 1 7.2040 10.5782 0.5652 18 6 7.9201 11.9686 -0.9160 19 7 8.0106 12.2359 -2.1919 20 14 8.6455 13.1470 0.3388 21 1 7.6198 14.1476 0.7291 22 1 9.0778 12.3873 1.5393 23 1 9.8155 13.8431 -0.2543 24 6 6.0753 8.3832 0.3611 25 6 4.6081 8.0419 0.6717 26 16 2.3792 2.4017 -1.4245 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3502 5.1417 -1.7652 33 1 3.6180 8.2255 -1.9800 34 1 3.9464 6.5089 -2.3332 35 1 5.7868 8.1363 -3.0557 36 1 6.3245 6.8145 -1.9866 37 1 8.4543 13.0463 -2.4874 38 1 6.7099 7.5285 0.5949 39 1 6.3852 9.2448 0.9525 40 1 3.9985 8.9432 0.6057 41 1 4.5334 7.6225 1.6750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365027192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:25 Heat of formation + Delta-G solvation = 4.100650 kcal Electronic energy + Delta-G solvation = -26618.708842 eV Core-core repulsion = 22661.189402 eV Total energy + Delta-G solvation = -3957.519441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.52260 -41.57832 -39.88634 -37.72241 -36.70015 -35.16418 -34.76758 -34.45208 -32.40426 -30.74437 -29.19676 -27.94471 -27.13953 -24.99239 -24.66048 -23.73812 -22.43204 -21.43087 -21.04619 -19.80720 -19.22519 -18.32100 -18.17331 -17.63816 -17.39941 -16.51879 -16.42635 -16.29649 -15.92140 -15.77900 -15.67018 -15.37630 -14.87060 -14.74127 -14.42732 -14.40264 -13.72520 -13.57736 -13.54888 -13.18814 -12.90398 -12.74974 -12.70167 -12.48002 -12.46314 -12.25278 -12.13440 -12.02717 -12.01396 -11.72780 -11.38780 -10.93844 -10.91914 -10.60459 -10.28771 -9.84398 -9.79045 -9.03520 -8.30212 -6.84161 -0.58072 -0.54936 0.11443 1.16659 1.41255 1.41777 1.44014 1.56594 1.96255 2.22009 2.30652 2.45362 2.77714 3.19401 3.57416 3.63280 3.82981 3.88573 4.03956 4.06415 4.21037 4.32029 4.38983 4.40997 4.44355 4.65426 4.71984 4.75561 4.84999 4.86936 5.00683 5.02848 5.10664 5.16566 5.36304 5.38521 5.47664 5.70401 6.10343 6.31652 6.43259 6.88426 7.10944 7.35068 7.64144 8.44076 8.65439 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036612 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.602393 B =12842.244014 C =13387.742032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C 0.007 3.993 4 N -0.270 5.270 5 N -0.322 5.322 6 C 0.223 3.777 7 N -0.625 5.625 8 C 0.704 3.296 9 O -0.571 6.571 10 N -0.611 5.611 11 C 0.106 3.894 12 C 0.103 3.897 13 N -0.645 5.645 14 C 0.545 3.455 15 O -0.626 6.626 16 C -0.569 4.569 17 H 0.094 0.906 18 C 0.032 3.968 19 N -0.819 5.819 20 Si 0.990 3.010 21 H -0.263 1.263 22 H -0.249 1.249 23 H -0.275 1.275 24 C 0.112 3.888 25 C 0.122 3.878 26 S 0.190 5.810 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.436 0.564 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.274 0.726 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -22.619 -0.521 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.276 4.276 4 N -0.106 5.106 5 N -0.165 5.165 6 C -0.149 4.149 7 N -0.284 5.284 8 C 0.403 3.597 9 O -0.445 6.445 10 N -0.348 5.348 11 C -0.017 4.017 12 C -0.022 4.022 13 N -0.382 5.382 14 C 0.352 3.648 15 O -0.513 6.513 16 C -0.605 4.605 17 H 0.112 0.888 18 C -0.184 4.184 19 N -0.449 5.449 20 Si 0.810 3.190 21 H -0.187 1.187 22 H -0.172 1.172 23 H -0.200 1.200 24 C -0.013 4.013 25 C -0.001 4.001 26 S 0.430 5.570 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.123 0.877 32 H 0.280 0.720 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.047 -22.273 -0.138 25.813 hybrid contribution 0.624 1.184 -0.057 1.339 sum -12.423 -21.089 -0.194 24.477 Atomic orbital electron populations 1.21807 0.92489 1.04118 1.02169 1.20440 0.97293 0.84014 1.06455 1.30783 1.03787 1.04424 0.88616 1.71396 1.13083 0.98249 1.27827 1.71508 1.19482 1.08672 1.16876 1.25823 1.01568 0.93548 0.93921 1.41988 1.67012 1.08265 1.11093 1.15889 0.78807 0.80390 0.84617 1.91040 1.58678 1.78845 1.15984 1.47291 1.63429 1.15683 1.08390 1.22198 0.97244 1.02528 0.79746 1.21664 0.93812 0.92098 0.94590 1.48004 1.66386 1.17877 1.05928 1.18570 0.77252 0.80468 0.88528 1.90547 1.63292 1.76833 1.20607 1.21498 1.38688 1.05981 0.94318 0.88814 1.26900 0.94317 0.99613 0.97522 1.70165 1.33357 1.23764 1.17597 0.85116 0.77983 0.77623 0.78252 1.18743 1.17231 1.20043 1.22012 0.94937 1.01486 0.82828 1.22050 0.94675 0.90785 0.92637 1.84354 1.61513 1.02705 1.08409 0.91859 0.88767 0.93692 0.86127 0.87738 0.71986 0.90383 0.86566 0.90250 0.91854 0.91616 0.92469 0.88005 0.90717 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.38 16 2 C -0.04 -0.35 6.56 29.85 0.20 -0.16 16 3 C 0.01 0.12 7.05 88.45 0.62 0.74 16 4 N -0.27 -7.58 11.65 -47.68 -0.56 -8.14 16 5 N -0.32 -10.50 9.75 -59.09 -0.58 -11.07 16 6 C 0.22 5.53 8.14 179.10 1.46 6.99 16 7 N -0.63 -14.31 5.32 -326.97 -1.74 -16.05 16 8 C 0.70 21.40 8.26 179.05 1.48 22.88 16 9 O -0.57 -22.42 14.46 -3.99 -0.06 -22.48 16 10 N -0.61 -17.40 2.95 -835.15 -2.46 -19.86 16 11 C 0.11 2.64 6.59 86.42 0.57 3.21 16 12 C 0.10 3.45 6.60 86.42 0.57 4.02 16 13 N -0.65 -27.23 2.94 -822.23 -2.42 -29.65 16 14 C 0.55 29.88 7.62 86.36 0.66 30.54 16 15 O -0.63 -39.61 14.45 -4.30 -0.06 -39.68 16 16 C -0.57 -30.61 8.86 24.83 0.22 -30.39 16 17 H 0.09 4.49 5.66 -2.91 -0.02 4.48 16 18 C 0.03 1.72 5.50 85.30 0.47 2.19 16 19 N -0.82 -48.51 11.84 21.84 0.26 -48.25 16 20 Si 0.99 39.77 29.56 68.60 2.03 41.80 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 23 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 24 C 0.11 3.92 6.51 86.56 0.56 4.48 16 25 C 0.12 3.77 6.60 86.56 0.57 4.34 16 26 S 0.19 2.73 23.31 -56.49 -1.32 1.41 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.44 6.35 6.27 -92.71 -0.58 5.76 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.12 1.75 5.55 -2.39 -0.01 1.74 16 35 H 0.08 3.03 6.99 -2.39 -0.02 3.01 16 36 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.27 14.75 8.29 -92.71 -0.77 13.98 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.10 3.69 5.34 -2.39 -0.01 3.68 16 40 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.10 3.09 7.02 -2.39 -0.02 3.07 16 Total: -1.00 -87.10 354.13 1.71 -85.39 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.52 Total: 18.12 kcal Atomic # 6 Polarization: 40.37 SS G_CDS: 8.09 Total: 48.46 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -7.49 Total: -133.02 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -0.12 Total: -62.16 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.32 Total: 1.41 kcal Total: -87.10 1.71 -85.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365027192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.492 kcal (2) G-P(sol) polarization free energy of solvation -87.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds