Wall clock time and date at job start Tue Mar 31 2020 22:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47191 * 265.17326 * 3 2 1 5 5 H 1.48502 * 109.47413 * 25.17464 * 3 2 1 6 6 H 1.48500 * 109.47218 * 145.17448 * 3 2 1 7 7 C 1.37880 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99723 * 354.10709 * 7 2 1 9 9 C 1.50696 * 120.00234 * 174.10846 * 7 2 1 10 10 H 1.09001 * 109.47124 * 56.81582 * 9 7 2 11 11 N 1.46502 * 109.46926 * 296.81578 * 9 7 2 12 12 C 1.34779 * 119.99908 * 154.99888 * 11 9 7 13 13 O 1.21588 * 119.99848 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99831 * 179.97438 * 12 11 9 15 15 C 1.46507 * 119.99734 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47072 * 180.02562 * 15 14 12 17 17 H 1.09005 * 110.42183 * 57.68427 * 16 15 14 18 18 C 1.54477 * 110.37503 * 180.02562 * 16 15 14 19 19 C 1.54505 * 104.18720 * 142.73817 * 18 16 15 20 20 C 1.54792 * 103.91115 * 0.10265 * 19 18 16 21 21 H 1.09003 * 110.53134 * 94.82908 * 20 19 18 22 22 C 1.50707 * 110.30728 * 217.11595 * 20 19 18 23 23 N 1.34778 * 119.99886 * 291.79788 * 22 20 19 24 24 O 1.21277 * 119.99541 * 111.79845 * 22 20 19 25 25 O 1.44420 * 104.80326 * 335.91557 * 20 19 18 26 26 C 1.53000 * 109.47117 * 176.82003 * 9 7 2 27 27 F 1.39897 * 109.47111 * 185.23401 * 26 9 7 28 28 F 1.39901 * 109.46986 * 305.23140 * 26 9 7 29 29 F 1.39896 * 109.47660 * 65.23122 * 26 9 7 30 30 H 0.97004 * 119.99419 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00058 * 335.00010 * 11 9 7 32 32 H 0.96998 * 120.00675 * 359.97438 * 14 12 11 33 33 H 1.09001 * 109.47226 * 60.00292 * 15 14 12 34 34 H 1.09001 * 109.47142 * 299.99732 * 15 14 12 35 35 H 1.09007 * 110.50637 * 261.45770 * 18 16 15 36 36 H 1.08998 * 110.50864 * 24.02100 * 18 16 15 37 37 H 1.08999 * 110.51023 * 118.71476 * 19 18 16 38 38 H 1.08997 * 110.51454 * 241.42178 * 19 18 16 39 39 H 0.96998 * 119.99887 * 359.97438 * 23 22 20 40 40 H 0.97003 * 119.99375 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5987 1.9875 -1.3951 5 1 1.3994 2.6800 0.5956 6 1 3.4920 1.4717 0.7995 7 6 2.0045 -1.1941 -0.0005 8 1 1.4687 -2.1269 0.0951 9 6 3.5055 -1.1975 -0.1345 10 1 3.9426 -0.5929 0.6601 11 7 3.8809 -0.6391 -1.4358 12 6 5.0941 -0.0763 -1.6030 13 8 5.8771 -0.0325 -0.6739 14 7 5.4396 0.4370 -2.8003 15 6 6.7586 1.0482 -2.9821 16 6 6.8948 1.5485 -4.4216 17 1 6.1021 2.2598 -4.6537 18 6 8.2801 2.1972 -4.6368 19 6 8.6740 1.7818 -6.0718 20 6 7.4747 0.9311 -6.5554 21 1 6.7706 1.5465 -7.1156 22 6 7.9565 -0.2175 -7.4040 23 7 8.4988 0.0203 -8.6147 24 8 7.8561 -1.3556 -6.9973 25 8 6.8597 0.4386 -5.3451 26 6 4.0238 -2.6330 -0.0269 27 9 5.4228 -2.6253 -0.0315 28 9 3.5645 -3.2067 1.1635 29 9 3.5581 -3.3798 -1.1144 30 1 -0.4849 0.8401 0.0004 31 1 3.2563 -0.6743 -2.1771 32 1 4.8154 0.4011 -3.5419 33 1 7.5330 0.3084 -2.7795 34 1 6.8683 1.8869 -2.2946 35 1 8.2100 3.2822 -4.5587 36 1 8.9996 1.8092 -3.9157 37 1 8.7987 2.6614 -6.7034 38 1 9.5869 1.1864 -6.0602 39 1 8.5786 0.9306 -8.9400 40 1 8.8092 -0.7190 -9.1606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365284606.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:58 Heat of formation + Delta-G solvation = -268.810885 kcal Electronic energy + Delta-G solvation = -30616.046880 eV Core-core repulsion = 25629.790745 eV Total energy + Delta-G solvation = -4986.256135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.96469 -46.46795 -46.45914 -40.64222 -39.38602 -38.58615 -35.16681 -34.25875 -34.08780 -32.51746 -32.37794 -30.66916 -28.76336 -26.11451 -24.92253 -23.10570 -21.61919 -21.32368 -20.90165 -20.18868 -18.40699 -18.12145 -17.63546 -17.37076 -17.28929 -16.77614 -16.71119 -16.33485 -15.93670 -15.72806 -14.98175 -14.62377 -14.53878 -14.39431 -14.06433 -13.87960 -13.40084 -13.34940 -12.97233 -12.92141 -12.87416 -12.74779 -12.65321 -12.61199 -12.56934 -12.21656 -12.01487 -11.72222 -11.58564 -11.19964 -11.11333 -10.57449 -10.38844 -10.14487 -10.10405 -9.98311 -9.84415 -9.60367 -8.94567 -8.76909 -8.23243 -6.46646 -4.59115 2.23284 2.73237 3.06695 3.20396 3.24385 3.36090 3.66342 3.71391 4.03186 4.05999 4.17250 4.25791 4.39495 4.51481 4.68458 4.71147 4.82583 5.02127 5.05644 5.08875 5.15517 5.27431 5.32292 5.44874 5.51879 5.58559 5.64110 5.89280 6.29065 6.43949 6.46986 6.82170 6.89449 6.95564 7.22253 7.52926 7.88326 7.97071 8.57575 8.68199 9.07852 9.21571 10.61691 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003285 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.265603 B = 8520.409734 C = 9313.822313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.096 3.904 3 Si 0.883 3.117 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.536 4.536 8 H 0.095 0.905 9 C 0.221 3.779 10 H 0.091 0.909 11 N -0.731 5.731 12 C 0.693 3.307 13 O -0.591 6.591 14 N -0.749 5.749 15 C 0.149 3.851 16 C 0.060 3.940 17 H 0.081 0.919 18 C -0.145 4.145 19 C -0.142 4.142 20 C 0.054 3.946 21 H 0.096 0.904 22 C 0.520 3.480 23 N -0.855 5.855 24 O -0.514 6.514 25 O -0.333 6.333 26 C 0.440 3.560 27 F -0.192 7.192 28 F -0.186 7.186 29 F -0.190 7.190 30 H 0.274 0.726 31 H 0.398 0.602 32 H 0.397 0.603 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.438 8.956 -16.897 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.113 4.113 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.574 4.574 8 H 0.113 0.887 9 C 0.117 3.883 10 H 0.108 0.892 11 N -0.387 5.387 12 C 0.393 3.607 13 O -0.470 6.470 14 N -0.406 5.406 15 C 0.024 3.976 16 C 0.002 3.998 17 H 0.099 0.901 18 C -0.184 4.184 19 C -0.180 4.180 20 C -0.008 4.008 21 H 0.114 0.886 22 C 0.303 3.697 23 N -0.421 5.421 24 O -0.387 6.387 25 O -0.251 6.251 26 C 0.384 3.616 27 F -0.174 7.174 28 F -0.167 7.167 29 F -0.172 7.172 30 H 0.084 0.916 31 H 0.234 0.766 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 15.744 8.156 -15.502 23.552 hybrid contribution 0.092 0.961 -1.307 1.624 sum 15.836 9.116 -16.808 24.828 Atomic orbital electron populations 1.69888 1.06404 1.28192 1.45264 1.24914 0.94750 0.99293 0.92352 0.86714 0.80417 0.82457 0.79449 1.19764 1.21477 1.18212 1.20842 0.86675 0.96533 1.53304 0.88700 1.20105 0.98255 0.84944 0.85041 0.89185 1.46766 1.14752 1.61634 1.15554 1.16379 0.83018 0.78463 0.82837 1.90882 1.51555 1.64087 1.40452 1.45062 1.17800 1.65284 1.12462 1.21163 0.85647 0.98410 0.92374 1.23408 0.97410 0.88618 0.90398 0.90091 1.22912 0.96966 1.01767 0.96730 1.22951 0.98129 0.99839 0.97070 1.22902 0.95496 0.93213 0.89148 0.88607 1.20265 0.77398 0.90253 0.81756 1.43742 1.66076 1.12771 1.19499 1.90830 1.53605 1.23038 1.71274 1.89381 1.79955 1.33898 1.21854 1.21555 0.74694 0.92305 0.73007 1.93151 1.30878 1.97128 1.96202 1.93099 1.88861 1.86840 1.47938 1.93080 1.88619 1.79710 1.55777 0.91636 0.76633 0.76889 0.90779 0.90297 0.89529 0.89539 0.89436 0.89997 0.77116 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 13.96 55.43 0.77 -23.28 16 2 C 0.10 2.54 5.46 -17.82 -0.10 2.44 16 3 Si 0.88 20.66 26.12 -169.99 -4.44 16.22 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.29 6.55 56.52 0.37 -5.92 16 7 C -0.54 -14.12 8.64 -34.44 -0.30 -14.42 16 8 H 0.10 2.72 7.91 -52.49 -0.42 2.30 16 9 C 0.22 5.32 1.41 -69.08 -0.10 5.22 16 10 H 0.09 2.30 6.29 -51.93 -0.33 1.98 16 11 N -0.73 -15.86 3.20 -59.81 -0.19 -16.05 16 12 C 0.69 14.65 7.95 -86.92 -0.69 13.95 16 13 O -0.59 -14.29 14.91 5.29 0.08 -14.21 16 14 N -0.75 -12.45 5.52 -65.22 -0.36 -12.81 16 15 C 0.15 2.03 5.29 -4.04 -0.02 2.01 16 16 C 0.06 0.60 3.33 -25.96 -0.09 0.51 16 17 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 18 C -0.15 -1.00 6.62 -25.17 -0.17 -1.17 16 19 C -0.14 -0.80 6.64 -25.00 -0.17 -0.97 16 20 C 0.05 0.45 3.72 -26.94 -0.10 0.35 16 21 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 22 C 0.52 5.21 7.34 -10.98 -0.08 5.13 16 23 N -0.85 -4.17 8.87 31.22 0.28 -3.89 16 24 O -0.51 -8.25 17.39 -13.63 -0.24 -8.49 16 25 O -0.33 -4.18 10.57 -54.42 -0.58 -4.75 16 26 C 0.44 10.35 2.79 37.16 0.10 10.45 16 27 F -0.19 -4.55 15.84 2.25 0.04 -4.52 16 28 F -0.19 -4.35 16.83 2.25 0.04 -4.31 16 29 F -0.19 -4.39 16.97 2.25 0.04 -4.35 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.40 7.98 8.61 -40.82 -0.35 7.63 16 32 H 0.40 5.82 8.49 -40.82 -0.35 5.48 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 39 H 0.40 0.52 8.83 -40.82 -0.36 0.16 16 40 H 0.41 1.72 8.93 -40.82 -0.36 1.36 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -36.36 352.12 -5.64 -42.01 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.68 Total: 9.60 kcal Atomic # 6 Polarization: 25.22 SS G_CDS: -1.70 Total: 23.52 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.50 Total: -56.03 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.73 Total: -27.44 kcal Atomic # 9 Polarization: -13.29 SS G_CDS: 0.11 Total: -13.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.44 Total: 16.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.36 -5.64 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365284606.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.805 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds