Wall clock time and date at job start Tue Mar 31 2020 22:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 11 11 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00476 * 155.00039 * 11 9 7 13 13 O 1.21581 * 119.99993 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00026 * 179.97438 * 12 11 9 15 15 C 1.46494 * 119.99895 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47151 * 179.97438 * 15 14 12 17 17 H 1.09008 * 109.82304 * 305.56570 * 16 15 14 18 18 C 1.54384 * 109.83118 * 184.58964 * 16 15 14 19 19 C 1.55306 * 102.25271 * 219.12953 * 18 16 15 20 20 C 1.54948 * 100.93959 * 34.13012 * 19 18 16 21 21 H 1.09003 * 110.30590 * 82.47724 * 20 19 18 22 22 C 1.50699 * 110.30654 * 204.63939 * 20 19 18 23 23 N 1.34780 * 120.00454 * 292.16886 * 22 20 19 24 24 O 1.21277 * 120.00173 * 112.17380 * 22 20 19 25 25 O 1.43234 * 109.83063 * 66.45220 * 16 15 14 26 26 C 1.52999 * 109.47265 * 59.99739 * 9 7 2 27 27 F 1.39898 * 109.46621 * 60.00227 * 26 9 7 28 28 F 1.39899 * 109.47312 * 179.97438 * 26 9 7 29 29 F 1.39896 * 109.47210 * 300.00686 * 26 9 7 30 30 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99239 * 335.00116 * 11 9 7 32 32 H 0.96998 * 119.99551 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.47503 * 300.00037 * 15 14 12 34 34 H 1.09000 * 109.47245 * 59.99983 * 15 14 12 35 35 H 1.08993 * 110.84559 * 337.32027 * 18 16 15 36 36 H 1.09003 * 110.84539 * 100.94468 * 18 16 15 37 37 H 1.09001 * 111.12686 * 276.21581 * 19 18 16 38 38 H 1.08997 * 111.16304 * 152.06632 * 19 18 16 39 39 H 0.97005 * 119.99571 * 359.97438 * 23 22 20 40 40 H 0.96993 * 120.00352 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 7 2.2028 -3.6128 -0.0005 12 6 1.8366 -4.8124 0.4927 13 8 0.7164 -4.9703 0.9381 14 7 2.7123 -5.8370 0.4922 15 6 2.3144 -7.1407 1.0288 16 6 3.4840 -8.1198 0.9094 17 1 3.8307 -8.1573 -0.1234 18 6 3.0386 -9.5259 1.3656 19 6 4.2877 -10.0332 2.1366 20 6 4.8053 -8.7123 2.7596 21 1 4.2582 -8.4858 3.6748 22 6 6.2822 -8.8109 3.0427 23 7 6.7307 -9.6479 3.9992 24 8 7.0673 -8.1372 2.4098 25 8 4.5542 -7.7054 1.7664 26 6 0.3707 -2.5799 -1.2494 27 9 1.1746 -2.5056 -2.3919 28 9 -0.3284 -3.7917 -1.2497 29 9 -0.5382 -1.5165 -1.2489 30 1 -0.4850 0.8401 0.0004 31 1 3.0967 -3.4866 -0.3556 32 1 3.6058 -5.7110 0.1365 33 1 2.0363 -7.0327 2.0772 34 1 1.4632 -7.5216 0.4645 35 1 2.1739 -9.4635 2.0262 36 1 2.8273 -10.1634 0.5071 37 1 5.0232 -10.4607 1.4552 38 1 4.0090 -10.7494 2.9096 39 1 6.1027 -10.1865 4.5057 40 1 7.6812 -9.7112 4.1816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365284607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:00 Heat of formation + Delta-G solvation = -280.460073 kcal Electronic energy + Delta-G solvation = -30358.289150 eV Core-core repulsion = 25371.527868 eV Total energy + Delta-G solvation = -4986.761282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.39252 -48.02328 -47.70601 -41.43500 -40.79771 -39.43766 -36.65893 -35.62162 -34.81236 -34.43630 -33.10592 -31.57665 -29.92230 -27.07801 -26.53027 -23.97001 -23.15647 -22.54443 -21.75104 -21.29683 -19.95075 -18.87737 -18.76914 -18.71364 -18.55153 -18.39256 -17.90036 -17.04607 -16.89179 -16.72005 -16.46907 -15.98199 -15.64759 -15.61279 -15.10311 -14.93905 -14.86484 -14.55000 -14.46468 -14.42865 -14.27426 -14.01672 -13.92845 -13.84695 -13.47324 -13.03332 -12.94855 -12.73792 -12.67585 -12.60970 -12.35606 -12.20948 -11.84582 -11.57692 -11.24485 -11.15434 -10.69619 -10.67663 -10.50045 -10.29817 -9.75287 -8.20692 -6.51359 1.46371 1.47824 1.54177 1.58874 1.76319 2.13763 2.20355 2.37746 2.58094 2.94912 2.98438 3.36572 3.42522 3.71275 3.81019 3.86714 3.89513 4.02459 4.11270 4.21945 4.23384 4.41286 4.61147 4.64148 4.86313 4.88024 4.94383 5.01457 5.22914 5.44746 5.50942 5.55737 5.66280 5.81605 5.97528 6.12780 6.46377 6.53768 7.15737 7.20601 7.33126 7.66116 8.72217 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.002708 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.749396 B =10336.012597 C =11447.515569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.015 3.985 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.282 1.282 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.271 3.729 10 H 0.046 0.954 11 N -0.723 5.723 12 C 0.695 3.305 13 O -0.628 6.628 14 N -0.731 5.731 15 C 0.131 3.869 16 C 0.070 3.930 17 H 0.094 0.906 18 C -0.138 4.138 19 C -0.130 4.130 20 C 0.051 3.949 21 H 0.117 0.883 22 C 0.513 3.487 23 N -0.828 5.828 24 O -0.586 6.586 25 O -0.378 6.378 26 C 0.414 3.586 27 F -0.204 7.204 28 F -0.218 7.218 29 F -0.150 7.150 30 H 0.269 0.731 31 H 0.408 0.592 32 H 0.408 0.592 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.421 0.579 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.910 -23.118 6.490 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.208 1.208 7 C -0.600 4.600 8 H 0.107 0.893 9 C 0.163 3.837 10 H 0.064 0.936 11 N -0.376 5.376 12 C 0.394 3.606 13 O -0.509 6.509 14 N -0.387 5.387 15 C 0.006 3.994 16 C 0.012 3.988 17 H 0.112 0.888 18 C -0.176 4.176 19 C -0.168 4.168 20 C -0.010 4.010 21 H 0.134 0.866 22 C 0.297 3.703 23 N -0.394 5.394 24 O -0.466 6.466 25 O -0.296 6.296 26 C 0.357 3.643 27 F -0.186 7.186 28 F -0.200 7.200 29 F -0.131 7.131 30 H 0.079 0.921 31 H 0.244 0.756 32 H 0.243 0.757 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.253 0.747 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.139 -22.478 6.367 25.086 hybrid contribution 0.640 0.827 -0.335 1.099 sum 9.780 -21.651 6.032 24.511 Atomic orbital electron populations 1.70537 1.07422 1.28165 1.44666 1.25993 0.95933 1.03618 0.93442 0.85152 0.78471 0.77075 0.78580 1.19522 1.18441 1.20764 1.21225 0.94487 0.88451 1.55852 0.89279 1.19158 0.88385 0.86490 0.89667 0.93594 1.45030 1.17339 1.09273 1.66001 1.16251 0.84423 0.81053 0.78826 1.90865 1.21758 1.83694 1.54629 1.44913 1.15992 1.10328 1.67477 1.21737 0.97266 0.81201 0.99159 1.23162 0.85899 0.94244 0.95524 0.88796 1.23140 0.99010 0.92851 1.02600 1.23275 0.97098 0.95149 1.01259 1.23139 0.91974 0.90802 0.95086 0.86550 1.20886 0.91076 0.78839 0.79478 1.43568 1.13279 1.44203 1.38383 1.90766 1.58978 1.45582 1.51244 1.88592 1.53742 1.42620 1.44690 1.23297 0.80853 0.72384 0.87734 1.92980 1.74206 1.96157 1.55212 1.93058 1.81575 1.48338 1.97011 1.93372 1.68969 1.54494 1.96312 0.92109 0.75601 0.75685 0.92252 0.90437 0.88290 0.87111 0.89931 0.85045 0.74718 0.75801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.58 9.50 21.45 0.20 -49.37 16 2 C 0.02 0.82 5.20 84.66 0.44 1.26 16 3 Si 0.98 41.82 29.54 68.60 2.03 43.84 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.56 -29.68 8.46 25.60 0.22 -29.47 16 8 H 0.09 4.38 7.74 -2.91 -0.02 4.35 16 9 C 0.27 14.25 2.21 44.24 0.10 14.35 16 10 H 0.05 2.78 7.58 -2.38 -0.02 2.76 16 11 N -0.72 -31.51 4.99 -461.42 -2.30 -33.81 16 12 C 0.69 29.47 8.10 179.05 1.45 30.92 16 13 O -0.63 -31.76 14.92 -3.97 -0.06 -31.82 16 14 N -0.73 -22.95 5.53 -478.56 -2.65 -25.59 16 15 C 0.13 3.25 5.21 86.38 0.45 3.70 16 16 C 0.07 1.24 3.56 31.06 0.11 1.35 16 17 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 18 C -0.14 -1.23 6.54 31.86 0.21 -1.03 16 19 C -0.13 -0.87 6.56 32.05 0.21 -0.66 16 20 C 0.05 0.74 3.86 30.51 0.12 0.86 16 21 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.51 9.27 7.45 87.66 0.65 9.92 16 23 N -0.83 -5.95 8.87 -173.53 -1.54 -7.49 16 24 O -0.59 -17.99 17.39 15.46 0.27 -17.72 16 25 O -0.38 -8.75 10.24 -130.50 -1.34 -10.08 16 26 C 0.41 22.25 2.81 71.98 0.20 22.46 16 27 F -0.20 -10.35 16.94 44.97 0.76 -9.59 16 28 F -0.22 -11.66 15.68 44.97 0.70 -10.96 16 29 F -0.15 -8.70 12.91 44.97 0.58 -8.12 16 30 H 0.27 14.41 8.31 -92.70 -0.77 13.63 16 31 H 0.41 15.34 8.55 -92.70 -0.79 14.54 16 32 H 0.41 11.15 8.49 -92.71 -0.79 10.36 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 0.73 7.85 -2.39 -0.02 0.71 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.64 8.05 -2.39 -0.02 0.62 16 38 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.42 -0.33 8.83 -92.70 -0.82 -1.15 16 40 H 0.41 2.53 8.93 -92.71 -0.83 1.70 16 Total: -1.00 -82.92 350.96 -1.25 -84.18 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -2.07 Total: 22.87 kcal Atomic # 6 Polarization: 49.51 SS G_CDS: 4.16 Total: 53.67 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -6.29 Total: -116.27 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -1.13 Total: -59.63 kcal Atomic # 9 Polarization: -30.71 SS G_CDS: 2.05 Total: -28.67 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -82.92 -1.25 -84.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365284607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.281 kcal (2) G-P(sol) polarization free energy of solvation -82.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds