Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48506 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47547 * 300.00288 * 3 2 1 6 6 H 1.48500 * 109.47276 * 60.01020 * 3 2 1 7 7 C 1.37872 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00138 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47064 * 300.00370 * 9 7 2 11 11 N 1.46506 * 109.46892 * 180.02562 * 9 7 2 12 12 C 1.34771 * 119.99515 * 155.00396 * 11 9 7 13 13 O 1.21583 * 120.00543 * 0.26795 * 12 11 9 14 14 N 1.34784 * 119.99547 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.82765 * 59.29929 * 16 15 14 18 18 C 1.54382 * 109.83113 * 180.18696 * 16 15 14 19 19 C 1.55311 * 102.25475 * 140.87023 * 18 16 15 20 20 C 1.54950 * 100.93831 * 325.86491 * 19 18 16 21 21 H 1.08988 * 110.31109 * 277.43015 * 20 19 18 22 22 C 1.50700 * 110.30727 * 155.35863 * 20 19 18 23 23 N 1.34780 * 119.99974 * 65.00181 * 22 20 19 24 24 O 1.21279 * 119.99909 * 244.99978 * 22 20 19 25 25 O 1.43241 * 109.82929 * 298.41160 * 16 15 14 26 26 C 1.52995 * 109.47032 * 60.00511 * 9 7 2 27 27 F 1.39901 * 109.47026 * 180.02562 * 26 9 7 28 28 F 1.39905 * 109.46965 * 299.99708 * 26 9 7 29 29 F 1.39899 * 109.47358 * 59.99830 * 26 9 7 30 30 H 0.96996 * 119.99976 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00076 * 335.00055 * 11 9 7 32 32 H 0.96999 * 120.00044 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 34 34 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 35 35 H 1.09005 * 110.84726 * 259.05730 * 18 16 15 36 36 H 1.08999 * 110.84881 * 22.67784 * 18 16 15 37 37 H 1.09000 * 111.12298 * 83.78551 * 19 18 16 38 38 H 1.08997 * 111.12453 * 207.90645 * 19 18 16 39 39 H 0.96995 * 119.99435 * 359.97438 * 23 22 20 40 40 H 0.96996 * 119.99860 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2032 -3.6126 -0.0005 12 6 1.8370 -4.8122 0.4927 13 8 0.7151 -4.9718 0.9331 14 7 2.7128 -5.8368 0.4922 15 6 2.3150 -7.1406 1.0288 16 6 3.4851 -8.1193 0.9106 17 1 4.3435 -7.7376 1.4632 18 6 3.0732 -9.4981 1.4698 19 6 3.7495 -10.4749 0.4695 20 6 3.6389 -9.6686 -0.8491 21 1 2.6530 -9.8038 -1.2937 22 6 4.7114 -10.0986 -1.8166 23 7 4.7078 -11.3514 -2.3135 24 8 5.5778 -9.3172 -2.1479 25 8 3.8337 -8.2956 -0.4675 26 6 0.3711 -2.5800 -1.2495 27 9 -0.3288 -3.7913 -1.2492 28 9 -0.5381 -1.5166 -1.2489 29 9 1.1750 -2.5056 -2.3920 30 1 -0.4850 0.8400 0.0004 31 1 3.0970 -3.4865 -0.3555 32 1 3.6064 -5.7108 0.1366 33 1 2.0367 -7.0325 2.0772 34 1 1.4638 -7.5215 0.4644 35 1 3.4652 -9.6411 2.4768 36 1 1.9896 -9.6152 1.4538 37 1 4.7916 -10.6510 0.7361 38 1 3.1992 -11.4135 0.4041 39 1 4.0151 -11.9763 -2.0481 40 1 5.3983 -11.6282 -2.9359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365284609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = -249.239257 kcal Electronic energy + Delta-G solvation = -30483.069550 eV Core-core repulsion = 25497.662105 eV Total energy + Delta-G solvation = -4985.407446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.23536 -45.88686 -45.50970 -40.66162 -39.28746 -38.54918 -34.92957 -34.21360 -34.01230 -32.56484 -32.41561 -30.53877 -28.22007 -26.05356 -24.46972 -23.04622 -21.81476 -21.45751 -20.59800 -20.03723 -18.25912 -18.11644 -17.76766 -16.85728 -16.72768 -16.51222 -16.28014 -16.03706 -15.98797 -15.17155 -14.94857 -14.76214 -14.57341 -14.33529 -13.78315 -13.72624 -13.21441 -13.05134 -12.80224 -12.47228 -12.41467 -12.32669 -12.28721 -12.19450 -12.05851 -11.87779 -11.73309 -11.64871 -11.39278 -11.10635 -10.80843 -10.70940 -10.38333 -10.33187 -10.08676 -9.73356 -9.57011 -9.46074 -8.71265 -8.64660 -8.05768 -6.17549 -4.40683 2.24918 2.75354 3.21191 3.22927 3.30075 3.34586 3.67230 3.88754 3.93729 4.24379 4.31394 4.34891 4.62025 4.67282 4.68786 4.84175 4.96337 4.99975 5.10810 5.17534 5.24146 5.35687 5.54754 5.69678 5.93407 5.95509 5.98646 6.31906 6.33978 6.55846 6.87915 6.93600 6.95448 7.31476 7.46430 7.69377 7.78880 7.89782 8.57139 8.76886 9.22519 9.34773 10.74153 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.002636 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.039444 B =10620.169527 C =10702.793298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.726 5.726 12 C 0.699 3.301 13 O -0.588 6.588 14 N -0.748 5.748 15 C 0.135 3.865 16 C 0.065 3.935 17 H 0.092 0.908 18 C -0.145 4.145 19 C -0.144 4.144 20 C 0.061 3.939 21 H 0.100 0.900 22 C 0.516 3.484 23 N -0.854 5.854 24 O -0.519 6.519 25 O -0.341 6.341 26 C 0.416 3.584 27 F -0.217 7.217 28 F -0.138 7.138 29 F -0.210 7.210 30 H 0.267 0.733 31 H 0.395 0.605 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.401 0.599 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -22.866 1.254 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.156 3.844 10 H 0.102 0.898 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.466 6.466 14 N -0.405 5.405 15 C 0.009 3.991 16 C 0.007 3.993 17 H 0.110 0.890 18 C -0.183 4.183 19 C -0.182 4.182 20 C -0.001 4.001 21 H 0.118 0.882 22 C 0.300 3.700 23 N -0.421 5.421 24 O -0.393 6.393 25 O -0.259 6.259 26 C 0.359 3.641 27 F -0.199 7.199 28 F -0.119 7.119 29 F -0.192 7.192 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.229 0.771 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.543 -22.017 1.425 23.012 hybrid contribution 0.854 0.291 -0.741 1.167 sum 7.396 -21.725 0.685 22.960 Atomic orbital electron populations 1.70423 1.05831 1.27146 1.43970 1.25081 0.95149 1.00075 0.94138 0.86161 0.79835 0.82020 0.77808 1.19408 1.20614 1.20614 1.20941 0.93855 0.88138 1.55794 0.90436 1.19584 0.88256 0.85002 0.91534 0.89782 1.45251 1.17415 1.09747 1.65478 1.16058 0.84315 0.80543 0.79194 1.90899 1.19498 1.83043 1.53188 1.44935 1.16647 1.10209 1.68730 1.21473 0.96005 0.82013 0.99565 1.23153 0.97770 0.95518 0.82816 0.89018 1.23111 1.02386 0.92650 1.00130 1.23248 1.02783 0.99100 0.93064 1.22861 0.97512 0.84505 0.95184 0.88244 1.20515 0.86204 0.81983 0.81334 1.43764 1.33980 1.13790 1.50536 1.90798 1.37690 1.51997 1.58773 1.88667 1.87789 1.23500 1.25943 1.23178 0.80915 0.72768 0.87233 1.93069 1.81425 1.48397 1.96969 1.93398 1.68448 1.53869 1.96215 1.92985 1.74461 1.96183 1.55560 0.92250 0.77169 0.76887 0.90652 0.91471 0.88984 0.89269 0.89710 0.88871 0.77097 0.76448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 9.50 55.43 0.53 -23.01 16 2 C 0.06 1.71 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -14.46 8.46 -34.44 -0.29 -14.75 16 8 H 0.08 1.93 7.74 -52.49 -0.41 1.53 16 9 C 0.26 6.79 2.21 -69.08 -0.15 6.63 16 10 H 0.08 2.42 7.58 -51.93 -0.39 2.02 16 11 N -0.73 -15.75 4.99 -59.81 -0.30 -16.05 16 12 C 0.70 14.70 8.10 -86.92 -0.70 13.99 16 13 O -0.59 -14.54 14.90 5.29 0.08 -14.46 16 14 N -0.75 -11.88 5.47 -65.23 -0.36 -12.24 16 15 C 0.13 1.72 5.23 -4.05 -0.02 1.70 16 16 C 0.07 0.63 3.59 -26.01 -0.09 0.53 16 17 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.14 -0.85 6.54 -24.78 -0.16 -1.02 16 19 C -0.14 -0.72 6.55 -24.48 -0.16 -0.88 16 20 C 0.06 0.51 3.87 -26.85 -0.10 0.41 16 21 H 0.10 0.69 8.14 -51.94 -0.42 0.27 16 22 C 0.52 5.04 7.46 -10.98 -0.08 4.96 16 23 N -0.85 -4.11 8.86 31.22 0.28 -3.84 16 24 O -0.52 -7.93 17.38 -13.80 -0.24 -8.17 16 25 O -0.34 -4.13 10.11 -54.59 -0.55 -4.68 16 26 C 0.42 11.13 2.81 37.16 0.10 11.23 16 27 F -0.22 -5.79 15.66 2.25 0.04 -5.76 16 28 F -0.14 -3.95 12.91 2.25 0.03 -3.92 16 29 F -0.21 -5.45 16.94 2.25 0.04 -5.41 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 7.53 8.55 -40.82 -0.35 7.18 16 32 H 0.40 5.61 8.42 -40.82 -0.34 5.27 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.48 7.85 -51.93 -0.41 0.07 16 37 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.40 0.56 8.83 -40.82 -0.36 0.20 16 40 H 0.40 1.67 8.93 -40.82 -0.36 1.30 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -37.10 350.72 -6.67 -43.77 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.71 Total: 8.51 kcal Atomic # 6 Polarization: 26.18 SS G_CDS: -1.76 Total: 24.42 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.15 Total: -55.14 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.71 Total: -27.31 kcal Atomic # 9 Polarization: -15.19 SS G_CDS: 0.10 Total: -15.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.10 -6.67 -43.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365284609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.467 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds