Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48506 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47547 * 300.00288 * 3 2 1 6 6 H 1.48500 * 109.47276 * 60.01020 * 3 2 1 7 7 C 1.37872 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00138 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47064 * 300.00370 * 9 7 2 11 11 N 1.46506 * 109.46892 * 180.02562 * 9 7 2 12 12 C 1.34771 * 119.99515 * 155.00396 * 11 9 7 13 13 O 1.21583 * 120.00543 * 0.26795 * 12 11 9 14 14 N 1.34784 * 119.99547 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.82765 * 59.29929 * 16 15 14 18 18 C 1.54382 * 109.83113 * 180.18696 * 16 15 14 19 19 C 1.55311 * 102.25475 * 140.87023 * 18 16 15 20 20 C 1.54950 * 100.93831 * 325.86491 * 19 18 16 21 21 H 1.08988 * 110.31109 * 277.43015 * 20 19 18 22 22 C 1.50700 * 110.30727 * 155.35863 * 20 19 18 23 23 N 1.34780 * 119.99974 * 65.00181 * 22 20 19 24 24 O 1.21279 * 119.99909 * 244.99978 * 22 20 19 25 25 O 1.43241 * 109.82929 * 298.41160 * 16 15 14 26 26 C 1.52995 * 109.47032 * 60.00511 * 9 7 2 27 27 F 1.39901 * 109.47026 * 180.02562 * 26 9 7 28 28 F 1.39905 * 109.46965 * 299.99708 * 26 9 7 29 29 F 1.39899 * 109.47358 * 59.99830 * 26 9 7 30 30 H 0.96996 * 119.99976 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00076 * 335.00055 * 11 9 7 32 32 H 0.96999 * 120.00044 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 34 34 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 35 35 H 1.09005 * 110.84726 * 259.05730 * 18 16 15 36 36 H 1.08999 * 110.84881 * 22.67784 * 18 16 15 37 37 H 1.09000 * 111.12298 * 83.78551 * 19 18 16 38 38 H 1.08997 * 111.12453 * 207.90645 * 19 18 16 39 39 H 0.96995 * 119.99435 * 359.97438 * 23 22 20 40 40 H 0.96996 * 119.99860 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2032 -3.6126 -0.0005 12 6 1.8370 -4.8122 0.4927 13 8 0.7151 -4.9718 0.9331 14 7 2.7128 -5.8368 0.4922 15 6 2.3150 -7.1406 1.0288 16 6 3.4851 -8.1193 0.9106 17 1 4.3435 -7.7376 1.4632 18 6 3.0732 -9.4981 1.4698 19 6 3.7495 -10.4749 0.4695 20 6 3.6389 -9.6686 -0.8491 21 1 2.6530 -9.8038 -1.2937 22 6 4.7114 -10.0986 -1.8166 23 7 4.7078 -11.3514 -2.3135 24 8 5.5778 -9.3172 -2.1479 25 8 3.8337 -8.2956 -0.4675 26 6 0.3711 -2.5800 -1.2495 27 9 -0.3288 -3.7913 -1.2492 28 9 -0.5381 -1.5166 -1.2489 29 9 1.1750 -2.5056 -2.3920 30 1 -0.4850 0.8400 0.0004 31 1 3.0970 -3.4865 -0.3555 32 1 3.6064 -5.7108 0.1366 33 1 2.0367 -7.0325 2.0772 34 1 1.4638 -7.5215 0.4644 35 1 3.4652 -9.6411 2.4768 36 1 1.9896 -9.6152 1.4538 37 1 4.7916 -10.6510 0.7361 38 1 3.1992 -11.4135 0.4041 39 1 4.0151 -11.9763 -2.0481 40 1 5.3983 -11.6282 -2.9359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365284609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = -280.442630 kcal Electronic energy + Delta-G solvation = -30484.422630 eV Core-core repulsion = 25497.662105 eV Total energy + Delta-G solvation = -4986.760525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39947 -48.03620 -47.71038 -41.42893 -40.79209 -39.43547 -36.65375 -35.60853 -34.82514 -34.43343 -33.10084 -31.57138 -29.92086 -27.08164 -26.53448 -23.97642 -23.15107 -22.52819 -21.74410 -21.29198 -19.94743 -18.87606 -18.77503 -18.73586 -18.54167 -18.39381 -17.89749 -17.00276 -16.90193 -16.79174 -16.49201 -15.94566 -15.63498 -15.61301 -15.09254 -14.97041 -14.83629 -14.57243 -14.46838 -14.43941 -14.28176 -14.02264 -13.92699 -13.84873 -13.46679 -13.02429 -12.95269 -12.72043 -12.67476 -12.64590 -12.35030 -12.20115 -11.84190 -11.54019 -11.24339 -11.15241 -10.70114 -10.69025 -10.50594 -10.29438 -9.74826 -8.20520 -6.51152 1.46107 1.47604 1.54286 1.60152 1.75462 2.16274 2.18917 2.37976 2.57713 2.94881 2.97980 3.37942 3.42431 3.70817 3.80586 3.86271 3.89370 4.02013 4.11924 4.20399 4.23689 4.41615 4.61573 4.65476 4.86260 4.87944 4.94718 5.01911 5.23426 5.45063 5.50937 5.55324 5.66575 5.81242 5.96961 6.13261 6.45763 6.54343 7.16008 7.20894 7.32573 7.66441 8.72666 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.002636 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.039444 B =10620.169527 C =10702.793298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.090 0.910 9 C 0.271 3.729 10 H 0.048 0.952 11 N -0.723 5.723 12 C 0.695 3.305 13 O -0.628 6.628 14 N -0.730 5.730 15 C 0.130 3.870 16 C 0.069 3.931 17 H 0.097 0.903 18 C -0.138 4.138 19 C -0.130 4.130 20 C 0.050 3.950 21 H 0.115 0.885 22 C 0.513 3.487 23 N -0.828 5.828 24 O -0.586 6.586 25 O -0.378 6.378 26 C 0.412 3.588 27 F -0.219 7.219 28 F -0.150 7.150 29 F -0.205 7.205 30 H 0.269 0.731 31 H 0.408 0.592 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.421 0.579 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.507 -24.538 1.709 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.108 0.892 9 C 0.163 3.837 10 H 0.066 0.934 11 N -0.376 5.376 12 C 0.394 3.606 13 O -0.509 6.509 14 N -0.386 5.386 15 C 0.006 3.994 16 C 0.011 3.989 17 H 0.114 0.886 18 C -0.176 4.176 19 C -0.168 4.168 20 C -0.011 4.011 21 H 0.132 0.868 22 C 0.297 3.703 23 N -0.394 5.394 24 O -0.465 6.465 25 O -0.297 6.297 26 C 0.355 3.645 27 F -0.201 7.201 28 F -0.131 7.131 29 F -0.187 7.187 30 H 0.079 0.921 31 H 0.244 0.756 32 H 0.243 0.757 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.253 0.747 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.821 -23.805 1.875 25.127 hybrid contribution 0.426 0.678 -0.917 1.217 sum 8.248 -23.127 0.959 24.572 Atomic orbital electron populations 1.70541 1.07454 1.28102 1.44747 1.26004 0.95934 1.03662 0.93459 0.85091 0.79042 0.77363 0.77683 1.18043 1.20677 1.20086 1.21261 0.94516 0.88364 1.55690 0.89159 1.19179 0.88368 0.86533 0.89577 0.93401 1.45032 1.17359 1.09350 1.65905 1.16257 0.84419 0.81048 0.78844 1.90866 1.21458 1.83716 1.54907 1.44893 1.16171 1.10081 1.67500 1.21752 0.97369 0.80961 0.99328 1.23179 0.96446 0.96783 0.82493 0.88568 1.23146 1.03124 0.90141 1.01169 1.23279 1.03362 0.99846 0.90273 1.23159 0.97482 0.83699 0.96711 0.86790 1.20884 0.85642 0.82577 0.81182 1.43565 1.34184 1.12532 1.49145 1.90767 1.40326 1.54120 1.61320 1.88632 1.87937 1.26005 1.27116 1.23383 0.80900 0.72361 0.87827 1.93058 1.81552 1.48458 1.97013 1.93373 1.68958 1.54485 1.96316 1.92981 1.74234 1.96154 1.55315 0.92129 0.75622 0.75688 0.90168 0.92591 0.86918 0.88445 0.89740 0.85075 0.74729 0.75796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.58 9.50 21.45 0.20 -49.38 16 2 C 0.01 0.77 5.20 84.65 0.44 1.21 16 3 Si 0.98 41.66 29.54 68.60 2.03 43.69 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.56 -29.46 8.46 25.60 0.22 -29.24 16 8 H 0.09 4.40 7.74 -2.91 -0.02 4.38 16 9 C 0.27 14.29 2.21 44.24 0.10 14.39 16 10 H 0.05 2.88 7.58 -2.39 -0.02 2.86 16 11 N -0.72 -31.60 4.99 -461.40 -2.30 -33.90 16 12 C 0.69 29.53 8.10 179.05 1.45 30.98 16 13 O -0.63 -31.79 14.90 -3.98 -0.06 -31.85 16 14 N -0.73 -23.04 5.47 -478.54 -2.62 -25.66 16 15 C 0.13 3.24 5.23 86.38 0.45 3.69 16 16 C 0.07 1.22 3.59 31.06 0.11 1.33 16 17 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.14 -1.21 6.54 31.86 0.21 -1.00 16 19 C -0.13 -0.86 6.55 32.05 0.21 -0.65 16 20 C 0.05 0.75 3.87 30.51 0.12 0.87 16 21 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 22 C 0.51 9.48 7.46 87.66 0.65 10.13 16 23 N -0.83 -6.23 8.86 -173.53 -1.54 -7.77 16 24 O -0.59 -18.22 17.38 15.48 0.27 -17.95 16 25 O -0.38 -8.88 10.11 -130.47 -1.32 -10.20 16 26 C 0.41 22.44 2.81 71.98 0.20 22.64 16 27 F -0.22 -11.94 15.66 44.97 0.70 -11.24 16 28 F -0.15 -8.76 12.91 44.97 0.58 -8.18 16 29 F -0.20 -10.66 16.94 44.97 0.76 -9.90 16 30 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.41 15.42 8.55 -92.71 -0.79 14.62 16 32 H 0.41 11.33 8.42 -92.71 -0.78 10.55 16 33 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.10 0.73 7.85 -2.39 -0.02 0.71 16 37 H 0.08 0.62 8.05 -2.39 -0.02 0.60 16 38 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.42 -0.19 8.83 -92.71 -0.82 -1.00 16 40 H 0.41 2.66 8.93 -92.71 -0.83 1.83 16 Total: -1.00 -83.22 350.72 -1.20 -84.42 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -2.06 Total: 23.55 kcal Atomic # 6 Polarization: 50.20 SS G_CDS: 4.16 Total: 54.36 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -6.26 Total: -116.71 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.11 Total: -59.99 kcal Atomic # 9 Polarization: -31.36 SS G_CDS: 2.05 Total: -29.32 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -83.22 -1.20 -84.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365284609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.028 kcal (2) G-P(sol) polarization free energy of solvation -83.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds