Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46971 * 299.99976 * 3 2 1 6 6 H 1.48502 * 109.47224 * 59.99993 * 3 2 1 7 7 C 1.37879 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99980 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47291 * 300.00135 * 9 7 2 11 11 N 1.46497 * 109.47398 * 180.02562 * 9 7 2 12 12 C 1.34776 * 120.00385 * 155.00198 * 11 9 7 13 13 O 1.21586 * 119.99740 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00468 * 180.02562 * 12 11 9 15 15 C 1.46495 * 120.00026 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47029 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.54835 * 303.57753 * 16 15 14 18 18 C 1.54990 * 110.62024 * 180.52371 * 16 15 14 19 19 C 1.54809 * 102.09428 * 204.47780 * 18 16 15 20 20 C 1.54101 * 104.18657 * 20.88047 * 19 18 16 21 21 H 1.08997 * 110.00354 * 242.53576 * 20 19 18 22 22 C 1.50702 * 109.87739 * 121.45549 * 20 19 18 23 23 N 1.34769 * 119.99908 * 65.71530 * 22 20 19 24 24 O 1.21277 * 119.99643 * 245.71210 * 22 20 19 25 25 O 1.43746 * 107.29451 * 2.03219 * 20 19 18 26 26 C 1.52999 * 109.47207 * 59.99602 * 9 7 2 27 27 F 1.39895 * 109.47513 * 180.02562 * 26 9 7 28 28 F 1.39903 * 109.47241 * 300.00263 * 26 9 7 29 29 F 1.39908 * 109.47002 * 60.00258 * 26 9 7 30 30 H 0.96998 * 120.00423 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00160 * 334.99992 * 11 9 7 32 32 H 0.97002 * 119.99281 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.47285 * 60.00413 * 15 14 12 34 34 H 1.08994 * 109.47483 * 299.99824 * 15 14 12 35 35 H 1.09003 * 110.91007 * 322.67866 * 18 16 15 36 36 H 1.09000 * 110.90976 * 86.27867 * 18 16 15 37 37 H 1.09001 * 110.48405 * 262.20595 * 19 18 16 38 38 H 1.08998 * 110.60118 * 139.61117 * 19 18 16 39 39 H 0.96997 * 120.00208 * 0.02562 * 23 22 20 40 40 H 0.97005 * 119.99770 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5563 0.8920 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8118 0.4970 13 8 0.7168 -4.9694 0.9425 14 7 2.7130 -5.8361 0.4984 15 6 2.3152 -7.1394 1.0362 16 6 3.4853 -8.1183 0.9188 17 1 3.8197 -8.1925 -0.1160 18 6 3.0885 -9.5118 1.4691 19 6 4.4623 -10.1103 1.8578 20 6 5.3802 -8.8817 2.0093 21 1 6.1868 -8.9265 1.2776 22 6 5.9540 -8.8395 3.4022 23 7 6.8030 -9.8031 3.8107 24 8 5.6517 -7.9383 4.1554 25 8 4.5738 -7.7146 1.7772 26 6 0.3710 -2.5810 -1.2471 27 9 -0.3289 -3.7923 -1.2458 28 9 -0.5382 -1.5177 -1.2474 29 9 1.1748 -2.5077 -2.3898 30 1 -0.4851 0.8400 0.0004 31 1 3.0970 -3.4869 -0.3524 32 1 3.6069 -5.7102 0.1433 33 1 1.4646 -7.5212 0.4716 34 1 2.0362 -7.0302 2.0841 35 1 2.4446 -9.4159 2.3433 36 1 2.6071 -10.1122 0.6972 37 1 4.8298 -10.7661 1.0685 38 1 4.3915 -10.6522 2.8008 39 1 7.0451 -10.5236 3.2081 40 1 7.1726 -9.7756 4.7072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365284611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -248.072002 kcal Electronic energy + Delta-G solvation = -30358.135053 eV Core-core repulsion = 25372.778223 eV Total energy + Delta-G solvation = -4985.356830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.25161 -45.90545 -45.51980 -40.67444 -39.27636 -38.50539 -34.96160 -34.22517 -34.03358 -32.54384 -32.38972 -30.54805 -28.21449 -26.04418 -24.46863 -23.00853 -21.74495 -21.37698 -20.86847 -20.05244 -18.33598 -18.08924 -17.33438 -16.88073 -16.78739 -16.63227 -16.50367 -16.09299 -15.84604 -15.12375 -15.03050 -14.71719 -14.43443 -14.27974 -14.03230 -13.82357 -13.20480 -12.89383 -12.82524 -12.64442 -12.42113 -12.30682 -12.20184 -12.15418 -11.98606 -11.88510 -11.73297 -11.54536 -11.34080 -11.09747 -10.80099 -10.70565 -10.47176 -10.32877 -10.07831 -9.82679 -9.56392 -9.45258 -8.71305 -8.64149 -8.05945 -6.16628 -4.39770 2.26189 2.77548 3.21399 3.23412 3.30821 3.35493 3.62992 3.89818 4.02000 4.25256 4.31198 4.35297 4.53939 4.66755 4.73923 4.86928 4.92615 5.00590 5.07696 5.11352 5.26880 5.42693 5.62647 5.67383 5.90648 5.96622 5.98292 6.31217 6.32959 6.49087 6.86297 6.92418 6.94327 7.31682 7.46877 7.70178 7.78368 7.90969 8.57955 8.76472 9.23245 9.35182 10.75084 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.002696 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.679474 B =10382.615595 C =11454.545330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.726 5.726 12 C 0.700 3.300 13 O -0.586 6.586 14 N -0.749 5.749 15 C 0.150 3.850 16 C 0.063 3.937 17 H 0.083 0.917 18 C -0.145 4.145 19 C -0.145 4.145 20 C 0.058 3.942 21 H 0.096 0.904 22 C 0.514 3.486 23 N -0.856 5.856 24 O -0.515 6.515 25 O -0.336 6.336 26 C 0.416 3.584 27 F -0.217 7.217 28 F -0.138 7.138 29 F -0.211 7.211 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.395 0.605 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.400 0.600 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -22.198 0.755 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.464 6.464 14 N -0.407 5.407 15 C 0.025 3.975 16 C 0.005 3.995 17 H 0.100 0.900 18 C -0.183 4.183 19 C -0.183 4.183 20 C -0.004 4.004 21 H 0.114 0.886 22 C 0.297 3.703 23 N -0.423 5.423 24 O -0.388 6.388 25 O -0.254 6.254 26 C 0.360 3.640 27 F -0.199 7.199 28 F -0.119 7.119 29 F -0.193 7.193 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.229 0.771 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.228 0.772 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 10.890 -21.287 1.591 23.964 hybrid contribution 1.439 0.302 -0.666 1.614 sum 12.329 -20.985 0.925 24.356 Atomic orbital electron populations 1.70418 1.05830 1.27155 1.43966 1.25081 0.95150 1.00077 0.94133 0.86160 0.79827 0.82022 0.77806 1.19417 1.20638 1.20581 1.20936 0.93854 0.88130 1.55787 0.90435 1.19588 0.88289 0.84997 0.91556 0.89739 1.45236 1.17333 1.09701 1.65595 1.16038 0.84330 0.80519 0.79170 1.90909 1.19790 1.82929 1.52731 1.44934 1.16325 1.10601 1.68791 1.21107 0.94370 0.81464 1.00518 1.23557 0.87582 0.93726 0.94639 0.89961 1.23108 0.97129 0.95398 1.02705 1.22929 0.95134 0.96815 1.03460 1.22605 0.95701 0.87721 0.94334 0.88647 1.20545 0.78703 0.81726 0.89339 1.43778 1.49959 1.29010 1.19516 1.90824 1.58267 1.34228 1.55445 1.89119 1.39120 1.28564 1.68628 1.23190 0.80924 0.72768 0.87161 1.93066 1.81435 1.48411 1.96963 1.93400 1.68431 1.53846 1.96205 1.92980 1.74494 1.96201 1.55597 0.92242 0.77248 0.77140 0.90171 0.90809 0.89487 0.89116 0.89344 0.89883 0.77160 0.76442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.65 9.50 55.43 0.53 -23.12 16 2 C 0.06 1.72 5.20 -17.82 -0.09 1.62 16 3 Si 0.92 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.55 -14.53 8.46 -34.44 -0.29 -14.82 16 8 H 0.08 1.94 7.74 -52.49 -0.41 1.54 16 9 C 0.26 6.79 2.21 -69.09 -0.15 6.64 16 10 H 0.09 2.46 7.58 -51.93 -0.39 2.07 16 11 N -0.73 -15.72 4.99 -59.82 -0.30 -16.02 16 12 C 0.70 14.84 8.10 -86.92 -0.70 14.14 16 13 O -0.59 -14.74 14.92 5.29 0.08 -14.66 16 14 N -0.75 -11.90 5.55 -65.23 -0.36 -12.26 16 15 C 0.15 2.01 5.42 -4.04 -0.02 1.99 16 16 C 0.06 0.60 3.38 -25.68 -0.09 0.51 16 17 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 18 C -0.15 -0.99 6.59 -24.73 -0.16 -1.15 16 19 C -0.15 -0.74 6.62 -25.20 -0.17 -0.90 16 20 C 0.06 0.46 3.84 -27.31 -0.10 0.36 16 21 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 22 C 0.51 5.04 7.22 -10.99 -0.08 4.96 16 23 N -0.86 -4.06 8.86 31.22 0.28 -3.78 16 24 O -0.51 -8.16 17.36 -14.01 -0.24 -8.41 16 25 O -0.34 -4.05 10.43 -54.80 -0.57 -4.62 16 26 C 0.42 11.02 2.81 37.16 0.10 11.13 16 27 F -0.22 -5.71 15.68 2.25 0.04 -5.68 16 28 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 29 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.39 8.55 -40.82 -0.35 7.04 16 32 H 0.40 5.28 8.49 -40.82 -0.35 4.93 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.68 8.06 -51.93 -0.42 0.26 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.39 7.69 -51.93 -0.40 -0.01 16 39 H 0.40 0.46 8.83 -40.82 -0.36 0.10 16 40 H 0.40 1.69 8.93 -40.82 -0.36 1.32 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -37.53 350.85 -6.69 -44.22 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.71 Total: 8.09 kcal Atomic # 6 Polarization: 26.23 SS G_CDS: -1.76 Total: 24.47 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.14 Total: -55.18 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.74 Total: -27.68 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 0.10 Total: -14.86 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.53 -6.69 -44.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365284611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.853 kcal (2) G-P(sol) polarization free energy of solvation -37.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds