Wall clock time and date at job start Tue Mar 31 2020 22:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46971 * 299.99976 * 3 2 1 6 6 H 1.48502 * 109.47224 * 59.99993 * 3 2 1 7 7 C 1.37879 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99980 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47291 * 300.00135 * 9 7 2 11 11 N 1.46497 * 109.47398 * 180.02562 * 9 7 2 12 12 C 1.34776 * 120.00385 * 155.00198 * 11 9 7 13 13 O 1.21586 * 119.99740 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00468 * 180.02562 * 12 11 9 15 15 C 1.46495 * 120.00026 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47029 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.54835 * 303.57753 * 16 15 14 18 18 C 1.54990 * 110.62024 * 180.52371 * 16 15 14 19 19 C 1.54809 * 102.09428 * 204.47780 * 18 16 15 20 20 C 1.54101 * 104.18657 * 20.88047 * 19 18 16 21 21 H 1.08997 * 110.00354 * 242.53576 * 20 19 18 22 22 C 1.50702 * 109.87739 * 121.45549 * 20 19 18 23 23 N 1.34769 * 119.99908 * 65.71530 * 22 20 19 24 24 O 1.21277 * 119.99643 * 245.71210 * 22 20 19 25 25 O 1.43746 * 107.29451 * 2.03219 * 20 19 18 26 26 C 1.52999 * 109.47207 * 59.99602 * 9 7 2 27 27 F 1.39895 * 109.47513 * 180.02562 * 26 9 7 28 28 F 1.39903 * 109.47241 * 300.00263 * 26 9 7 29 29 F 1.39908 * 109.47002 * 60.00258 * 26 9 7 30 30 H 0.96998 * 120.00423 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00160 * 334.99992 * 11 9 7 32 32 H 0.97002 * 119.99281 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.47285 * 60.00413 * 15 14 12 34 34 H 1.08994 * 109.47483 * 299.99824 * 15 14 12 35 35 H 1.09003 * 110.91007 * 322.67866 * 18 16 15 36 36 H 1.09000 * 110.90976 * 86.27867 * 18 16 15 37 37 H 1.09001 * 110.48405 * 262.20595 * 19 18 16 38 38 H 1.08998 * 110.60118 * 139.61117 * 19 18 16 39 39 H 0.96997 * 120.00208 * 0.02562 * 23 22 20 40 40 H 0.97005 * 119.99770 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5563 0.8920 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8118 0.4970 13 8 0.7168 -4.9694 0.9425 14 7 2.7130 -5.8361 0.4984 15 6 2.3152 -7.1394 1.0362 16 6 3.4853 -8.1183 0.9188 17 1 3.8197 -8.1925 -0.1160 18 6 3.0885 -9.5118 1.4691 19 6 4.4623 -10.1103 1.8578 20 6 5.3802 -8.8817 2.0093 21 1 6.1868 -8.9265 1.2776 22 6 5.9540 -8.8395 3.4022 23 7 6.8030 -9.8031 3.8107 24 8 5.6517 -7.9383 4.1554 25 8 4.5738 -7.7146 1.7772 26 6 0.3710 -2.5810 -1.2471 27 9 -0.3289 -3.7923 -1.2458 28 9 -0.5382 -1.5177 -1.2474 29 9 1.1748 -2.5077 -2.3898 30 1 -0.4851 0.8400 0.0004 31 1 3.0970 -3.4869 -0.3524 32 1 3.6069 -5.7102 0.1433 33 1 1.4646 -7.5212 0.4716 34 1 2.0362 -7.0302 2.0841 35 1 2.4446 -9.4159 2.3433 36 1 2.6071 -10.1122 0.6972 37 1 4.8298 -10.7661 1.0685 38 1 4.3915 -10.6522 2.8008 39 1 7.0451 -10.5236 3.2081 40 1 7.1726 -9.7756 4.7072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365284611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:06 Heat of formation + Delta-G solvation = -280.138093 kcal Electronic energy + Delta-G solvation = -30359.525543 eV Core-core repulsion = 25372.778223 eV Total energy + Delta-G solvation = -4986.747320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.38920 -48.02022 -47.70144 -41.42407 -40.82598 -39.37706 -36.67901 -35.67864 -34.84148 -34.44373 -33.06295 -31.58695 -29.91646 -27.08350 -26.53231 -23.94605 -23.15895 -22.44143 -21.81665 -21.46120 -19.97873 -18.91300 -18.80263 -18.69642 -18.53150 -17.99284 -17.82731 -17.46856 -16.92554 -16.60841 -16.47969 -16.01249 -15.73822 -15.37349 -15.09066 -14.98214 -14.92263 -14.59696 -14.48648 -14.42714 -14.27493 -14.01351 -13.90581 -13.81740 -13.79571 -13.03901 -12.74703 -12.69442 -12.64482 -12.58919 -12.29248 -12.20146 -11.87640 -11.54193 -11.28223 -11.18849 -10.69377 -10.69179 -10.54642 -10.31718 -9.76860 -8.20569 -6.51401 1.46384 1.46778 1.56200 1.59854 1.74134 2.13432 2.21590 2.37579 2.57789 2.94968 2.96654 3.31110 3.49330 3.76611 3.81253 3.89550 3.89858 4.02930 4.11914 4.18470 4.22658 4.47163 4.51870 4.65262 4.85826 4.90920 4.92768 5.03494 5.15848 5.44487 5.50066 5.54836 5.66273 5.76327 5.92355 6.12921 6.47370 6.54060 7.16136 7.21015 7.34509 7.65534 8.72578 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.002696 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.679474 B =10382.615595 C =11454.545330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.562 4.562 8 H 0.091 0.909 9 C 0.270 3.730 10 H 0.043 0.957 11 N -0.720 5.720 12 C 0.694 3.306 13 O -0.630 6.630 14 N -0.728 5.728 15 C 0.145 3.855 16 C 0.068 3.932 17 H 0.112 0.888 18 C -0.145 4.145 19 C -0.133 4.133 20 C 0.052 3.948 21 H 0.130 0.870 22 C 0.507 3.493 23 N -0.829 5.829 24 O -0.590 6.590 25 O -0.378 6.378 26 C 0.415 3.585 27 F -0.218 7.218 28 F -0.151 7.151 29 F -0.202 7.202 30 H 0.269 0.731 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.422 0.578 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.066 -24.039 -0.574 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.599 4.599 8 H 0.109 0.891 9 C 0.162 3.838 10 H 0.061 0.939 11 N -0.374 5.374 12 C 0.394 3.606 13 O -0.511 6.511 14 N -0.385 5.385 15 C 0.020 3.980 16 C 0.011 3.989 17 H 0.129 0.871 18 C -0.183 4.183 19 C -0.171 4.171 20 C -0.009 4.009 21 H 0.147 0.853 22 C 0.292 3.708 23 N -0.395 5.395 24 O -0.469 6.469 25 O -0.297 6.297 26 C 0.358 3.642 27 F -0.200 7.200 28 F -0.132 7.132 29 F -0.184 7.184 30 H 0.079 0.921 31 H 0.246 0.754 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.254 0.746 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 13.594 -23.243 0.231 26.928 hybrid contribution 0.656 0.748 -0.224 1.020 sum 14.250 -22.495 0.008 26.629 Atomic orbital electron populations 1.70544 1.07476 1.28107 1.44764 1.26016 0.95942 1.03704 0.93456 0.85086 0.79051 0.77329 0.77680 1.17993 1.20401 1.20356 1.21259 0.94531 0.88353 1.55720 0.89117 1.19166 0.88439 0.86567 0.89673 0.93888 1.44983 1.17363 1.09131 1.65958 1.16270 0.84439 0.81135 0.78800 1.90875 1.22011 1.83685 1.54559 1.44818 1.16055 1.10176 1.67447 1.21313 0.96942 0.81052 0.98650 1.23599 0.85838 0.93479 0.95973 0.87080 1.23149 0.98234 0.94215 1.02706 1.22978 0.93109 0.95860 1.05148 1.22953 0.96675 0.87669 0.93615 0.85270 1.21101 0.78598 0.81312 0.89799 1.43583 1.47810 1.28104 1.20041 1.90793 1.61243 1.37392 1.57520 1.89076 1.40134 1.31147 1.69346 1.23252 0.80846 0.72376 0.87691 1.93058 1.81532 1.48389 1.97005 1.93373 1.68960 1.54534 1.96314 1.92982 1.74156 1.96157 1.55102 0.92134 0.75440 0.75352 0.89702 0.93686 0.91464 0.86331 0.85199 0.89546 0.74633 0.75955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.01 9.50 21.45 0.20 -49.81 16 2 C 0.01 0.75 5.20 84.66 0.44 1.19 16 3 Si 0.99 41.96 29.54 68.60 2.03 43.99 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.56 -29.68 8.46 25.60 0.22 -29.46 16 8 H 0.09 4.45 7.74 -2.91 -0.02 4.42 16 9 C 0.27 14.29 2.21 44.24 0.10 14.38 16 10 H 0.04 2.65 7.58 -2.38 -0.02 2.63 16 11 N -0.72 -31.45 4.99 -461.42 -2.30 -33.75 16 12 C 0.69 29.97 8.10 179.05 1.45 31.42 16 13 O -0.63 -32.92 14.92 -3.99 -0.06 -32.98 16 14 N -0.73 -22.97 5.55 -478.54 -2.65 -25.62 16 15 C 0.14 3.88 5.42 86.38 0.47 4.35 16 16 C 0.07 1.18 3.38 31.28 0.11 1.28 16 17 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 18 C -0.14 -1.62 6.59 31.89 0.21 -1.41 16 19 C -0.13 -0.85 6.62 31.58 0.21 -0.64 16 20 C 0.05 0.69 3.84 30.22 0.12 0.80 16 21 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 22 C 0.51 9.42 7.22 87.66 0.63 10.05 16 23 N -0.83 -6.06 8.86 -173.54 -1.54 -7.60 16 24 O -0.59 -19.37 17.36 15.69 0.27 -19.10 16 25 O -0.38 -8.69 10.43 -130.27 -1.36 -10.04 16 26 C 0.41 22.33 2.81 71.98 0.20 22.53 16 27 F -0.22 -11.70 15.68 44.97 0.70 -11.00 16 28 F -0.15 -8.76 12.91 44.97 0.58 -8.18 16 29 F -0.20 -10.15 16.94 44.97 0.76 -9.39 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.41 15.06 8.55 -92.71 -0.79 14.27 16 32 H 0.41 10.47 8.49 -92.71 -0.79 9.68 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 36 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.09 0.53 7.69 -2.39 -0.02 0.51 16 39 H 0.42 -0.52 8.83 -92.71 -0.82 -1.34 16 40 H 0.41 2.77 8.93 -92.70 -0.83 1.94 16 Total: -1.00 -86.23 350.85 -1.28 -87.51 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -2.07 Total: 21.46 kcal Atomic # 6 Polarization: 50.35 SS G_CDS: 4.15 Total: 54.50 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.29 Total: -116.77 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.15 Total: -62.12 kcal Atomic # 9 Polarization: -30.61 SS G_CDS: 2.05 Total: -28.57 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -86.23 -1.28 -87.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365284611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.624 kcal (2) G-P(sol) polarization free energy of solvation -86.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds