Wall clock time and date at job start Tue Mar 31 2020 22:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48508 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46984 * 299.99546 * 3 2 1 6 6 H 1.48503 * 109.47230 * 59.99839 * 3 2 1 7 7 C 1.37883 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00026 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46818 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99840 * 170.00097 * 10 9 7 12 12 C 1.53239 * 109.34222 * 187.25823 * 11 10 9 13 13 N 1.47083 * 108.51632 * 306.16993 * 12 11 10 14 14 C 1.34779 * 120.88103 * 231.16367 * 13 12 11 15 15 O 1.21576 * 120.00054 * 174.80500 * 14 13 12 16 16 N 1.34776 * 119.99752 * 354.79955 * 14 13 12 17 17 C 1.38894 * 120.00116 * 185.05815 * 16 14 13 18 18 N 1.29518 * 125.27135 * 179.71925 * 17 16 14 19 19 C 1.33671 * 115.65520 * 179.79032 * 18 17 16 20 20 C 1.47199 * 122.49576 * 180.23783 * 19 18 17 21 21 N 1.34771 * 120.00115 * 0.29002 * 20 19 18 22 22 O 1.21646 * 119.99540 * 180.29020 * 20 19 18 23 23 C 1.34871 * 115.00053 * 0.51038 * 19 18 17 24 24 S 1.70978 * 109.19973 * 359.73026 * 23 19 18 25 25 C 1.47075 * 118.23852 * 51.18689 * 13 12 11 26 26 C 1.46896 * 111.00621 * 294.30383 * 10 9 7 27 27 H 0.96995 * 119.99526 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46723 * 60.00417 * 9 7 2 29 29 H 1.08999 * 109.47197 * 299.99786 * 9 7 2 30 30 H 1.09010 * 109.49319 * 307.21503 * 11 10 9 31 31 H 1.08995 * 109.49612 * 67.29412 * 11 10 9 32 32 H 1.09001 * 109.63134 * 65.87663 * 12 11 10 33 33 H 1.08995 * 109.62912 * 186.46254 * 12 11 10 34 34 H 0.96994 * 120.00253 * 5.06170 * 16 14 13 35 35 H 0.96994 * 120.00152 * 359.97438 * 21 20 19 36 36 H 0.97007 * 119.99425 * 179.97438 * 21 20 19 37 37 H 1.07996 * 125.39972 * 179.76875 * 23 19 18 38 38 H 1.09011 * 109.62921 * 189.10376 * 25 13 12 39 39 H 1.08996 * 109.63466 * 68.52708 * 25 13 12 40 40 H 1.09003 * 109.49115 * 292.70946 * 26 10 9 41 41 H 1.08998 * 109.48873 * 52.75775 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5210 -4.8935 0.2387 12 6 2.5635 -6.0033 0.4116 13 7 3.4614 -5.9863 -0.7532 14 6 3.7121 -7.1125 -1.4499 15 8 4.3802 -7.0637 -2.4645 16 7 3.2222 -8.2928 -1.0217 17 6 3.5665 -9.4671 -1.6788 18 7 3.1608 -10.6531 -1.3527 19 6 3.6087 -11.6500 -2.1224 20 6 3.2384 -13.0556 -1.8907 21 7 2.4135 -13.3765 -0.8745 22 8 3.6771 -13.9277 -2.6167 23 6 4.4298 -11.2723 -3.1235 24 16 4.6275 -9.5746 -3.0785 25 6 4.0789 -4.7079 -1.1374 26 6 2.9767 -3.6492 -1.2493 27 1 -0.4849 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 0.9158 -4.8191 1.1422 31 1 0.8795 -5.1264 -0.6111 32 1 3.1392 -5.8266 1.3202 33 1 2.0629 -6.9694 0.4740 34 1 2.6292 -8.3223 -0.2547 35 1 2.0641 -12.6812 -0.2954 36 1 2.1692 -14.3029 -0.7221 37 1 4.8891 -11.9369 -3.8403 38 1 4.5801 -4.8177 -2.0991 39 1 4.8002 -4.4067 -0.3778 40 1 2.3149 -3.8994 -2.0784 41 1 3.4268 -2.6722 -1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365541670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:26 Heat of formation + Delta-G solvation = 4.116096 kcal Electronic energy + Delta-G solvation = -26307.462305 eV Core-core repulsion = 22349.943534 eV Total energy + Delta-G solvation = -3957.518771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11357 -40.40068 -38.68531 -37.94437 -35.27527 -34.67835 -33.88414 -32.52258 -31.06259 -30.16070 -28.39193 -26.05437 -25.61747 -23.81099 -22.95505 -22.23715 -21.39333 -20.57405 -19.61684 -18.57247 -18.09571 -17.70747 -17.21956 -16.44536 -16.33909 -16.04898 -15.75706 -15.34403 -14.84695 -14.67640 -14.48936 -14.34982 -14.28709 -13.94175 -13.73627 -13.48463 -13.19401 -12.49758 -12.21147 -12.10035 -11.43743 -11.41128 -11.29833 -10.98823 -10.89571 -10.75127 -10.69640 -10.59927 -10.36909 -10.22275 -10.00590 -9.98897 -9.65148 -9.38705 -8.95518 -8.55856 -8.41425 -7.49151 -6.14450 -4.16705 0.35564 0.75283 1.51041 1.59022 1.93703 2.71432 3.16207 3.23949 3.24597 3.32193 3.35809 3.38359 4.10166 4.30782 4.56009 4.90889 4.94822 5.03492 5.09083 5.17183 5.23373 5.33349 5.39680 5.58592 5.65919 5.77068 5.84990 6.01050 6.06912 6.23107 6.36735 6.43219 6.54394 6.89795 7.08351 7.14728 7.18191 7.41996 7.63890 7.87511 7.92973 7.95307 7.99718 8.35350 8.90593 9.48457 10.96333 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032601 B = 0.002071 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.656362 B =13519.932355 C =14119.363722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.112 3.888 13 N -0.607 5.607 14 C 0.706 3.294 15 O -0.562 6.562 16 N -0.635 5.635 17 C 0.282 3.718 18 N -0.494 5.494 19 C 0.020 3.980 20 C 0.602 3.398 21 N -0.838 5.838 22 O -0.542 6.542 23 C -0.271 4.271 24 S 0.295 5.705 25 C 0.130 3.870 26 C 0.049 3.951 27 H 0.262 0.738 28 H -0.008 1.008 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.420 0.580 35 H 0.411 0.589 36 H 0.404 0.596 37 H 0.188 0.812 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 -20.785 -0.659 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.011 4.011 13 N -0.342 5.342 14 C 0.407 3.593 15 O -0.440 6.440 16 N -0.290 5.290 17 C -0.089 4.089 18 N -0.218 5.218 19 C -0.115 4.115 20 C 0.385 3.615 21 N -0.401 5.401 22 O -0.419 6.419 23 C -0.415 4.415 24 S 0.547 5.453 25 C 0.008 3.992 26 C -0.080 4.080 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.262 0.738 35 H 0.240 0.760 36 H 0.235 0.765 37 H 0.205 0.795 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.118 -20.165 -1.637 21.448 hybrid contribution -1.356 -0.143 0.486 1.448 sum 5.762 -20.308 -1.151 21.141 Atomic orbital electron populations 1.69961 1.06109 1.26865 1.50678 1.25003 0.94883 0.99451 0.95262 0.86428 0.80060 0.83285 0.77567 1.19582 1.21081 1.20995 1.21154 0.93532 0.89771 1.50489 0.91669 1.19739 0.89949 0.87113 0.96294 1.62107 1.27990 1.02424 1.33477 1.22387 0.94529 0.90755 1.01321 1.21964 0.91972 0.98703 0.88481 1.47429 1.48682 1.07316 1.30749 1.15676 0.80413 0.79916 0.83307 1.90848 1.44622 1.83701 1.24825 1.41953 1.50899 1.02188 1.33999 1.23955 0.99515 0.88213 0.97209 1.66963 1.27735 0.96907 1.30198 1.19624 1.02402 0.93421 0.96084 1.17138 0.78032 0.86096 0.80267 1.43622 1.50328 1.13089 1.33084 1.90857 1.54915 1.48793 1.47321 1.26987 1.05217 1.04626 1.04621 1.85218 1.41453 0.94738 1.23866 1.21958 0.95777 0.79587 1.01840 1.22392 0.95190 0.99239 0.91224 0.92858 0.99006 0.94955 0.89621 0.95274 0.89629 0.91081 0.73815 0.75959 0.76540 0.79516 0.88744 0.90292 0.95447 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.28 8.41 -34.44 -0.29 -13.57 16 8 H 0.07 1.66 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.59 4.72 -4.98 -0.02 4.57 16 10 N -0.53 -9.94 4.62 -235.77 -1.09 -11.02 16 11 C 0.04 0.58 5.62 -3.70 -0.02 0.55 16 12 C 0.11 1.20 6.54 -3.60 -0.02 1.18 16 13 N -0.61 -7.53 3.01 -178.20 -0.54 -8.06 16 14 C 0.71 8.89 8.27 -86.92 -0.72 8.17 16 15 O -0.56 -8.27 13.32 5.30 0.07 -8.20 16 16 N -0.64 -6.57 5.31 -16.30 -0.09 -6.65 16 17 C 0.28 3.16 8.36 -87.54 -0.73 2.42 16 18 N -0.49 -5.36 10.12 -10.51 -0.11 -5.47 16 19 C 0.02 0.22 6.66 -84.62 -0.56 -0.34 16 20 C 0.60 6.74 8.06 -12.62 -0.10 6.63 16 21 N -0.84 -6.17 8.87 30.38 0.27 -5.91 16 22 O -0.54 -7.64 17.49 5.24 0.09 -7.55 16 23 C -0.27 -2.83 10.55 29.54 0.31 -2.52 16 24 S 0.30 3.16 20.30 -107.50 -2.18 0.98 16 25 C 0.13 1.78 6.61 -3.61 -0.02 1.76 16 26 C 0.05 0.83 5.46 -3.71 -0.02 0.80 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H -0.01 -0.20 8.12 -51.93 -0.42 -0.63 16 29 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 30 H 0.09 1.19 7.99 -51.92 -0.41 0.77 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.53 5.74 -51.93 -0.30 0.23 16 34 H 0.42 3.36 6.36 -40.82 -0.26 3.10 16 35 H 0.41 2.49 8.31 -40.82 -0.34 2.15 16 36 H 0.40 2.19 8.93 -40.82 -0.36 1.82 16 37 H 0.19 1.71 7.99 -52.49 -0.42 1.30 16 38 H 0.09 1.27 7.04 -51.92 -0.37 0.90 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.87 6.67 -51.93 -0.35 1.52 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -32.11 355.01 -9.65 -41.76 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.84 Total: 2.85 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -2.30 Total: 11.06 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.81 Total: -61.80 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.16 Total: -15.75 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.18 Total: 0.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.11 -9.65 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365541670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.875 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds