Wall clock time and date at job start Tue Mar 31 2020 22:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48508 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46984 * 299.99546 * 3 2 1 6 6 H 1.48503 * 109.47230 * 59.99839 * 3 2 1 7 7 C 1.37883 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00026 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46818 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99840 * 170.00097 * 10 9 7 12 12 C 1.53239 * 109.34222 * 187.25823 * 11 10 9 13 13 N 1.47083 * 108.51632 * 306.16993 * 12 11 10 14 14 C 1.34779 * 120.88103 * 231.16367 * 13 12 11 15 15 O 1.21576 * 120.00054 * 174.80500 * 14 13 12 16 16 N 1.34776 * 119.99752 * 354.79955 * 14 13 12 17 17 C 1.38894 * 120.00116 * 185.05815 * 16 14 13 18 18 N 1.29518 * 125.27135 * 179.71925 * 17 16 14 19 19 C 1.33671 * 115.65520 * 179.79032 * 18 17 16 20 20 C 1.47199 * 122.49576 * 180.23783 * 19 18 17 21 21 N 1.34771 * 120.00115 * 0.29002 * 20 19 18 22 22 O 1.21646 * 119.99540 * 180.29020 * 20 19 18 23 23 C 1.34871 * 115.00053 * 0.51038 * 19 18 17 24 24 S 1.70978 * 109.19973 * 359.73026 * 23 19 18 25 25 C 1.47075 * 118.23852 * 51.18689 * 13 12 11 26 26 C 1.46896 * 111.00621 * 294.30383 * 10 9 7 27 27 H 0.96995 * 119.99526 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46723 * 60.00417 * 9 7 2 29 29 H 1.08999 * 109.47197 * 299.99786 * 9 7 2 30 30 H 1.09010 * 109.49319 * 307.21503 * 11 10 9 31 31 H 1.08995 * 109.49612 * 67.29412 * 11 10 9 32 32 H 1.09001 * 109.63134 * 65.87663 * 12 11 10 33 33 H 1.08995 * 109.62912 * 186.46254 * 12 11 10 34 34 H 0.96994 * 120.00253 * 5.06170 * 16 14 13 35 35 H 0.96994 * 120.00152 * 359.97438 * 21 20 19 36 36 H 0.97007 * 119.99425 * 179.97438 * 21 20 19 37 37 H 1.07996 * 125.39972 * 179.76875 * 23 19 18 38 38 H 1.09011 * 109.62921 * 189.10376 * 25 13 12 39 39 H 1.08996 * 109.63466 * 68.52708 * 25 13 12 40 40 H 1.09003 * 109.49115 * 292.70946 * 26 10 9 41 41 H 1.08998 * 109.48873 * 52.75775 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5210 -4.8935 0.2387 12 6 2.5635 -6.0033 0.4116 13 7 3.4614 -5.9863 -0.7532 14 6 3.7121 -7.1125 -1.4499 15 8 4.3802 -7.0637 -2.4645 16 7 3.2222 -8.2928 -1.0217 17 6 3.5665 -9.4671 -1.6788 18 7 3.1608 -10.6531 -1.3527 19 6 3.6087 -11.6500 -2.1224 20 6 3.2384 -13.0556 -1.8907 21 7 2.4135 -13.3765 -0.8745 22 8 3.6771 -13.9277 -2.6167 23 6 4.4298 -11.2723 -3.1235 24 16 4.6275 -9.5746 -3.0785 25 6 4.0789 -4.7079 -1.1374 26 6 2.9767 -3.6492 -1.2493 27 1 -0.4849 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 0.9158 -4.8191 1.1422 31 1 0.8795 -5.1264 -0.6111 32 1 3.1392 -5.8266 1.3202 33 1 2.0629 -6.9694 0.4740 34 1 2.6292 -8.3223 -0.2547 35 1 2.0641 -12.6812 -0.2954 36 1 2.1692 -14.3029 -0.7221 37 1 4.8891 -11.9369 -3.8403 38 1 4.5801 -4.8177 -2.0991 39 1 4.8002 -4.4067 -0.3778 40 1 2.3149 -3.8994 -2.0784 41 1 3.4268 -2.6722 -1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365541670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:25 Heat of formation + Delta-G solvation = -21.656317 kcal Electronic energy + Delta-G solvation = -26308.579880 eV Core-core repulsion = 22349.943534 eV Total energy + Delta-G solvation = -3958.636346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07574 -41.27947 -39.65411 -39.11287 -36.27652 -36.01174 -34.64769 -34.39106 -32.19243 -31.10928 -29.91702 -27.41034 -26.69396 -24.95842 -24.20603 -23.52110 -22.55315 -21.61010 -20.59458 -19.51743 -19.03046 -18.52540 -18.44136 -18.04618 -17.30153 -16.92813 -16.85522 -16.50273 -16.25552 -15.99072 -15.51636 -15.47638 -15.30921 -15.22349 -15.08097 -14.42186 -14.31246 -14.04473 -13.59333 -13.19827 -12.99360 -12.74444 -12.60785 -12.36378 -12.32558 -12.23585 -12.15204 -11.77056 -11.59834 -11.36444 -11.23225 -11.06700 -10.75158 -10.61322 -10.48892 -10.02611 -9.32047 -9.04221 -8.19795 -6.29001 -0.48910 -0.07337 0.66192 0.72141 1.01061 1.43123 1.44832 1.57111 1.75903 2.30229 2.34033 2.41863 2.62178 3.13006 3.21214 3.34491 3.86238 4.02346 4.07690 4.15920 4.25613 4.26053 4.42683 4.50889 4.57234 4.69737 4.83425 4.93361 4.97036 5.01996 5.09082 5.21566 5.31202 5.47264 5.66152 5.78390 6.04625 6.08314 6.24851 6.38139 6.56150 6.59598 6.87406 6.97811 7.21986 7.41009 8.91343 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032601 B = 0.002071 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.656362 B =13519.932355 C =14119.363722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.519 4.519 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.537 5.537 11 C 0.036 3.964 12 C 0.120 3.880 13 N -0.608 5.608 14 C 0.709 3.291 15 O -0.585 6.585 16 N -0.622 5.622 17 C 0.268 3.732 18 N -0.484 5.484 19 C 0.004 3.996 20 C 0.599 3.401 21 N -0.818 5.818 22 O -0.578 6.578 23 C -0.265 4.265 24 S 0.299 5.701 25 C 0.144 3.856 26 C 0.053 3.947 27 H 0.263 0.737 28 H -0.042 1.042 29 H 0.011 0.989 30 H 0.092 0.908 31 H 0.020 0.980 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.432 0.568 35 H 0.419 0.581 36 H 0.415 0.585 37 H 0.197 0.803 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.012 0.988 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 -21.795 0.205 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.094 4.094 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.409 3.591 15 O -0.464 6.464 16 N -0.278 5.278 17 C -0.103 4.103 18 N -0.209 5.209 19 C -0.131 4.131 20 C 0.381 3.619 21 N -0.381 5.381 22 O -0.458 6.458 23 C -0.409 4.409 24 S 0.551 5.449 25 C 0.021 3.979 26 C -0.077 4.077 27 H 0.072 0.928 28 H -0.024 1.024 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.038 0.962 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.276 0.724 35 H 0.251 0.749 36 H 0.248 0.752 37 H 0.214 0.786 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.030 0.970 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.155 -21.217 -0.718 22.741 hybrid contribution -1.730 0.094 0.206 1.745 sum 6.425 -21.123 -0.512 22.084 Atomic orbital electron populations 1.70085 1.07724 1.27758 1.51997 1.25893 0.95684 1.03171 0.94999 0.85368 0.79221 0.78808 0.77430 1.18369 1.20923 1.20699 1.21509 0.93826 0.90867 1.49580 0.91363 1.19371 0.90037 0.88803 0.93603 1.62010 1.27017 1.02948 1.34224 1.22532 0.95724 0.89921 1.01176 1.22031 0.90981 0.98914 0.88269 1.47380 1.48904 1.06881 1.31162 1.15656 0.80229 0.80298 0.82884 1.90841 1.45603 1.84165 1.25768 1.41693 1.50696 1.01279 1.34141 1.24066 1.00101 0.88456 0.97676 1.66937 1.27345 0.96668 1.29904 1.19772 1.03052 0.93668 0.96620 1.17200 0.78299 0.85744 0.80628 1.43482 1.48694 1.14130 1.31756 1.90840 1.56570 1.49553 1.48822 1.27141 1.04624 1.04684 1.04436 1.85262 1.41230 0.94708 1.23721 1.21721 0.94360 0.79151 1.02623 1.22335 0.95589 0.99744 0.89987 0.92809 1.02385 0.97101 0.89010 0.96187 0.88135 0.87162 0.72407 0.74920 0.75239 0.78587 0.88369 0.89110 0.97001 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.52 -27.43 8.41 25.60 0.22 -27.21 16 8 H 0.07 3.49 7.13 -2.91 -0.02 3.47 16 9 C 0.21 10.19 4.72 85.56 0.40 10.59 16 10 N -0.54 -19.98 4.62 -899.84 -4.16 -24.13 16 11 C 0.04 0.99 5.62 86.38 0.49 1.48 16 12 C 0.12 2.23 6.54 86.35 0.56 2.79 16 13 N -0.61 -13.69 3.01 -835.95 -2.52 -16.21 16 14 C 0.71 16.21 8.27 179.05 1.48 17.69 16 15 O -0.58 -16.21 13.32 -3.96 -0.05 -16.26 16 16 N -0.62 -11.17 5.31 -323.76 -1.72 -12.89 16 17 C 0.27 5.42 8.36 179.27 1.50 6.92 16 18 N -0.48 -9.47 10.12 -187.16 -1.89 -11.36 16 19 C 0.00 0.08 6.66 40.45 0.27 0.35 16 20 C 0.60 12.58 8.06 86.60 0.70 13.27 16 21 N -0.82 -10.46 8.87 -176.03 -1.56 -12.02 16 22 O -0.58 -15.85 17.49 -4.18 -0.07 -15.93 16 23 C -0.26 -5.20 10.55 67.05 0.71 -4.49 16 24 S 0.30 5.96 20.30 -56.49 -1.15 4.81 16 25 C 0.14 3.72 6.61 86.35 0.57 4.29 16 26 C 0.05 1.79 5.46 86.38 0.47 2.26 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 28 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 29 H 0.01 0.57 7.97 -2.39 -0.02 0.55 16 30 H 0.09 2.45 7.99 -2.38 -0.02 2.43 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 1.20 5.74 -2.39 -0.01 1.19 16 34 H 0.43 5.37 6.36 -92.71 -0.59 4.78 16 35 H 0.42 4.08 8.31 -92.71 -0.77 3.31 16 36 H 0.41 3.69 8.93 -92.70 -0.83 2.86 16 37 H 0.20 3.39 7.99 -2.91 -0.02 3.37 16 38 H 0.10 2.51 7.04 -2.38 -0.02 2.49 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 3.11 6.67 -2.39 -0.02 3.10 16 Total: -1.00 -70.42 355.01 -4.04 -74.46 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -1.06 Total: 10.62 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 7.83 Total: 28.44 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -11.56 Total: -130.52 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.13 Total: -32.19 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.15 Total: 4.81 kcal Total: -70.42 -4.04 -74.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365541670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds