Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40540 * 119.81814 * 2 1 4 4 C 1.36028 * 119.74536 * 179.74552 * 3 2 1 5 5 C 1.40812 * 119.22795 * 0.25148 * 4 3 2 6 6 N 1.32301 * 133.46807 * 179.97438 * 5 4 3 7 7 N 1.28684 * 109.48557 * 180.02562 * 6 5 4 8 8 C 1.30800 * 110.28793 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.24422 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47527 * 269.98052 * 9 8 7 11 11 S 1.65597 * 120.00375 * 165.00135 * 10 9 8 12 12 O 1.42105 * 106.40266 * 178.53982 * 11 10 9 13 13 O 1.42099 * 106.40117 * 311.45697 * 11 10 9 14 14 N 1.65595 * 107.21806 * 64.99880 * 11 10 9 15 15 C 1.46497 * 120.00031 * 269.99745 * 14 11 10 16 16 C 1.46501 * 119.99949 * 90.00347 * 14 11 10 17 17 C 1.50697 * 109.47338 * 95.00010 * 16 14 11 18 18 H 1.08006 * 119.99860 * 359.97438 * 17 16 14 19 19 C 1.37874 * 120.00148 * 180.02562 * 17 16 14 20 20 N 1.31511 * 120.00084 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00275 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47448 * 89.99438 * 21 19 17 23 23 H 1.48496 * 109.47504 * 209.99747 * 21 19 17 24 24 H 1.48506 * 109.46814 * 329.99619 * 21 19 17 25 25 N 1.36062 * 107.51004 * 0.02562 * 8 7 6 26 26 C 1.34956 * 119.81631 * 180.24539 * 2 1 3 27 27 H 1.08998 * 109.47043 * 89.99633 * 1 2 3 28 28 H 1.09000 * 109.47661 * 209.99982 * 1 2 3 29 29 H 1.09004 * 109.46801 * 329.99929 * 1 2 3 30 30 H 1.08002 * 120.12952 * 0.02645 * 3 2 1 31 31 H 1.08004 * 120.38365 * 180.27495 * 4 3 2 32 32 H 1.09005 * 109.47291 * 29.98164 * 9 8 7 33 33 H 1.08998 * 109.47006 * 149.97417 * 9 8 7 34 34 H 0.97003 * 119.99424 * 344.99845 * 10 9 8 35 35 H 1.09002 * 109.46735 * 89.99932 * 15 14 11 36 36 H 1.09000 * 109.47797 * 210.00181 * 15 14 11 37 37 H 1.09000 * 109.47520 * 330.00463 * 15 14 11 38 38 H 1.09001 * 109.46737 * 214.99615 * 16 14 11 39 39 H 1.08995 * 109.46931 * 334.99763 * 16 14 11 40 40 H 0.96999 * 120.00404 * 180.02562 * 20 19 17 41 41 H 1.08009 * 119.74473 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2193 0.0000 4 6 3.5661 1.2176 0.0052 5 6 4.2521 -0.0121 0.0052 6 7 5.5341 -0.3392 0.0090 7 7 5.6501 -1.6208 0.0064 8 6 4.4691 -2.1831 0.0013 9 6 4.1872 -3.6634 -0.0025 10 7 4.0999 -4.1404 -1.3849 11 16 4.1695 -5.7633 -1.7068 12 8 4.0250 -5.8999 -3.1139 13 8 5.2866 -6.2675 -0.9877 14 7 2.8262 -6.4554 -1.0295 15 6 2.8724 -6.9483 0.3494 16 6 1.5917 -6.5750 -1.8091 17 6 1.5307 -7.9388 -2.4474 18 1 2.3317 -8.6457 -2.2885 19 6 0.4529 -8.2838 -3.2349 20 7 -0.5222 -7.4229 -3.4288 21 14 0.3776 -9.9740 -4.0267 22 1 -0.3064 -10.9204 -3.1093 23 1 -0.3766 -9.8896 -5.3031 24 1 1.7560 -10.4558 -4.2971 25 7 3.5417 -1.1875 0.0002 26 6 2.1780 -1.1709 -0.0050 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6650 2.1542 0.0004 31 1 4.1135 2.1486 0.0098 32 1 4.9920 -4.1880 0.5127 33 1 3.2435 -3.8549 0.5082 34 1 4.0014 -3.5056 -2.1116 35 1 2.5804 -6.1492 1.0307 36 1 2.1859 -7.7878 0.4584 37 1 3.8854 -7.2744 0.5849 38 1 0.7325 -6.4429 -1.1515 39 1 1.5765 -5.8097 -2.5851 40 1 -1.2806 -7.6656 -3.9826 41 1 1.6308 -2.1021 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413378971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = 35.711828 kcal Electronic energy + Delta-G solvation = -27335.500845 eV Core-core repulsion = 23379.352168 eV Total energy + Delta-G solvation = -3956.148677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.81083 -38.84257 -36.74247 -35.83300 -35.55887 -35.24569 -34.12799 -32.93632 -32.50128 -30.09140 -27.86589 -27.68720 -26.31017 -25.13607 -24.10653 -22.92519 -22.38330 -21.65803 -19.17463 -18.37419 -17.66599 -17.36731 -16.88587 -16.78328 -16.52883 -15.95322 -15.55351 -15.26655 -15.06507 -14.39780 -14.18007 -14.02915 -13.70568 -13.40172 -13.34140 -13.04425 -12.78295 -12.41332 -12.36427 -12.23015 -12.16731 -11.82903 -11.74584 -11.69666 -11.49423 -11.35893 -11.23438 -11.12865 -10.81591 -10.75618 -10.58868 -10.09883 -9.84619 -9.67300 -9.59206 -8.50905 -8.39128 -8.17249 -6.13228 -4.17050 0.26941 0.66935 1.11700 1.97439 2.38996 2.97297 3.27832 3.34681 3.40168 3.45258 3.65241 3.96680 4.05772 4.09398 4.33190 4.38496 4.40093 4.45157 4.88459 4.90392 4.93424 5.10362 5.17641 5.20396 5.22791 5.39751 5.52093 5.55090 5.59932 5.70222 5.72606 5.77298 5.87588 6.00611 6.20897 6.46650 6.52868 6.87735 7.12888 7.30784 7.50539 7.84588 8.12812 8.28817 8.85522 9.48793 10.95430 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.003352 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.858069 B = 8350.036036 C = 9661.737546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.082 4.082 4 C -0.078 4.078 5 C 0.190 3.810 6 N -0.289 5.289 7 N -0.228 5.228 8 C 0.134 3.866 9 C 0.217 3.783 10 N -1.132 6.132 11 S 2.782 3.218 12 O -0.956 6.956 13 O -0.990 6.990 14 N -0.996 5.996 15 C 0.092 3.908 16 C 0.257 3.743 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.063 3.937 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 N -0.380 5.380 26 C 0.062 3.938 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 17.607 10.717 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.100 4.100 5 C -0.058 4.058 6 N -0.136 5.136 7 N -0.069 5.069 8 C -0.129 4.129 9 C 0.088 3.912 10 N -0.891 5.891 11 S 2.789 3.211 12 O -0.940 6.940 13 O -0.973 6.973 14 N -0.839 5.839 15 C -0.055 4.055 16 C 0.135 3.865 17 C -0.570 4.570 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.196 1.196 25 N -0.059 5.059 26 C -0.060 4.060 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.247 0.753 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.005 17.042 10.315 20.021 hybrid contribution -1.918 -0.497 -0.646 2.084 sum 0.087 16.545 9.669 19.163 Atomic orbital electron populations 1.20750 0.88300 1.03877 1.03591 1.19659 0.97813 0.91409 1.01663 1.21167 0.93358 0.98445 0.97647 1.20275 0.93701 0.94500 1.01477 1.22388 0.89813 0.88099 1.05532 1.75015 1.11791 1.05095 1.21673 1.74281 1.19106 1.00519 1.12996 1.24698 0.84132 0.93121 1.10938 1.19389 1.03368 0.83853 0.84606 1.56460 1.91876 1.28269 1.12461 1.02045 0.73303 0.72241 0.73520 1.93661 1.86422 1.84475 1.29446 1.93543 1.50401 1.78388 1.74998 1.57648 1.30608 1.72819 1.22816 1.21413 1.02900 0.99653 0.81532 1.19066 0.79784 0.97724 0.89898 1.21494 1.05775 0.99676 1.30016 0.92073 1.24921 0.95389 0.97645 0.96000 1.69904 1.09488 1.35008 1.39162 0.86504 0.78363 0.83864 0.78801 1.20579 1.21038 1.19637 1.43655 1.07234 1.08476 1.46524 1.21623 0.80157 1.01333 1.02935 0.90034 0.90571 0.90509 0.83390 0.82426 0.86680 0.89842 0.75304 0.94391 0.90143 0.91297 0.94665 0.94479 0.92670 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.00 36.01 0.36 -0.13 16 2 C -0.10 -0.70 5.85 -104.92 -0.61 -1.31 16 3 C -0.08 -0.50 9.73 -39.51 -0.38 -0.89 16 4 C -0.08 -0.65 10.11 -39.40 -0.40 -1.05 16 5 C 0.19 2.36 7.92 -156.06 -1.24 1.12 16 6 N -0.29 -4.44 12.31 31.14 0.38 -4.06 16 7 N -0.23 -3.64 12.19 32.94 0.40 -3.24 16 8 C 0.13 1.81 7.53 -154.23 -1.16 0.65 16 9 C 0.22 2.68 6.77 -5.20 -0.04 2.65 16 10 N -1.13 -16.60 6.05 -11.66 -0.07 -16.67 16 11 S 2.78 53.08 6.10 -107.50 -0.66 52.43 16 12 O -0.96 -22.42 17.11 -57.17 -0.98 -23.40 16 13 O -0.99 -20.04 16.21 -57.17 -0.93 -20.97 16 14 N -1.00 -19.17 3.23 -123.06 -0.40 -19.57 16 15 C 0.09 1.42 10.68 59.85 0.64 2.06 16 16 C 0.26 6.07 5.08 -5.19 -0.03 6.04 16 17 C -0.53 -14.43 9.38 -34.44 -0.32 -14.75 16 18 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -25.29 13.29 55.43 0.74 -24.55 16 21 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 N -0.38 -4.45 2.95 -59.73 -0.18 -4.63 16 26 C 0.06 0.55 10.52 -16.70 -0.18 0.37 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 29 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.12 1.40 7.75 -51.93 -0.40 1.00 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 5.76 8.64 -34.47 -0.30 5.46 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 37 H 0.07 1.02 7.02 -51.93 -0.36 0.66 16 38 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -36.70 367.39 -9.84 -46.54 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.22 Total: -0.19 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.45 Total: -3.60 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: 0.88 Total: -72.73 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.90 Total: -44.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.66 Total: 52.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.70 -9.84 -46.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413378971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.255 kcal (2) G-P(sol) polarization free energy of solvation -36.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds