Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40540 * 119.81814 * 2 1 4 4 C 1.36028 * 119.74536 * 179.74552 * 3 2 1 5 5 C 1.40812 * 119.22795 * 0.25148 * 4 3 2 6 6 N 1.32301 * 133.46807 * 179.97438 * 5 4 3 7 7 N 1.28684 * 109.48557 * 180.02562 * 6 5 4 8 8 C 1.30800 * 110.28793 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.24422 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47527 * 269.98052 * 9 8 7 11 11 S 1.65597 * 120.00375 * 165.00135 * 10 9 8 12 12 O 1.42105 * 106.40266 * 178.53982 * 11 10 9 13 13 O 1.42099 * 106.40117 * 311.45697 * 11 10 9 14 14 N 1.65595 * 107.21806 * 64.99880 * 11 10 9 15 15 C 1.46497 * 120.00031 * 269.99745 * 14 11 10 16 16 C 1.46501 * 119.99949 * 90.00347 * 14 11 10 17 17 C 1.50697 * 109.47338 * 95.00010 * 16 14 11 18 18 H 1.08006 * 119.99860 * 359.97438 * 17 16 14 19 19 C 1.37874 * 120.00148 * 180.02562 * 17 16 14 20 20 N 1.31511 * 120.00084 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00275 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47448 * 89.99438 * 21 19 17 23 23 H 1.48496 * 109.47504 * 209.99747 * 21 19 17 24 24 H 1.48506 * 109.46814 * 329.99619 * 21 19 17 25 25 N 1.36062 * 107.51004 * 0.02562 * 8 7 6 26 26 C 1.34956 * 119.81631 * 180.24539 * 2 1 3 27 27 H 1.08998 * 109.47043 * 89.99633 * 1 2 3 28 28 H 1.09000 * 109.47661 * 209.99982 * 1 2 3 29 29 H 1.09004 * 109.46801 * 329.99929 * 1 2 3 30 30 H 1.08002 * 120.12952 * 0.02645 * 3 2 1 31 31 H 1.08004 * 120.38365 * 180.27495 * 4 3 2 32 32 H 1.09005 * 109.47291 * 29.98164 * 9 8 7 33 33 H 1.08998 * 109.47006 * 149.97417 * 9 8 7 34 34 H 0.97003 * 119.99424 * 344.99845 * 10 9 8 35 35 H 1.09002 * 109.46735 * 89.99932 * 15 14 11 36 36 H 1.09000 * 109.47797 * 210.00181 * 15 14 11 37 37 H 1.09000 * 109.47520 * 330.00463 * 15 14 11 38 38 H 1.09001 * 109.46737 * 214.99615 * 16 14 11 39 39 H 1.08995 * 109.46931 * 334.99763 * 16 14 11 40 40 H 0.96999 * 120.00404 * 180.02562 * 20 19 17 41 41 H 1.08009 * 119.74473 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2193 0.0000 4 6 3.5661 1.2176 0.0052 5 6 4.2521 -0.0121 0.0052 6 7 5.5341 -0.3392 0.0090 7 7 5.6501 -1.6208 0.0064 8 6 4.4691 -2.1831 0.0013 9 6 4.1872 -3.6634 -0.0025 10 7 4.0999 -4.1404 -1.3849 11 16 4.1695 -5.7633 -1.7068 12 8 4.0250 -5.8999 -3.1139 13 8 5.2866 -6.2675 -0.9877 14 7 2.8262 -6.4554 -1.0295 15 6 2.8724 -6.9483 0.3494 16 6 1.5917 -6.5750 -1.8091 17 6 1.5307 -7.9388 -2.4474 18 1 2.3317 -8.6457 -2.2885 19 6 0.4529 -8.2838 -3.2349 20 7 -0.5222 -7.4229 -3.4288 21 14 0.3776 -9.9740 -4.0267 22 1 -0.3064 -10.9204 -3.1093 23 1 -0.3766 -9.8896 -5.3031 24 1 1.7560 -10.4558 -4.2971 25 7 3.5417 -1.1875 0.0002 26 6 2.1780 -1.1709 -0.0050 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6650 2.1542 0.0004 31 1 4.1135 2.1486 0.0098 32 1 4.9920 -4.1880 0.5127 33 1 3.2435 -3.8549 0.5082 34 1 4.0014 -3.5056 -2.1116 35 1 2.5804 -6.1492 1.0307 36 1 2.1859 -7.7878 0.4584 37 1 3.8854 -7.2744 0.5849 38 1 0.7325 -6.4429 -1.1515 39 1 1.5765 -5.8097 -2.5851 40 1 -1.2806 -7.6656 -3.9826 41 1 1.6308 -2.1021 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413378971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = 9.194086 kcal Electronic energy + Delta-G solvation = -27336.650740 eV Core-core repulsion = 23379.352168 eV Total energy + Delta-G solvation = -3957.298573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.68581 -39.55254 -38.37160 -37.25593 -36.90950 -36.87569 -34.94553 -34.49547 -33.60650 -30.98939 -29.65175 -28.32652 -27.27642 -26.73326 -24.84471 -24.21681 -23.61142 -22.56198 -20.57505 -19.25484 -19.05076 -18.50506 -18.39980 -18.07496 -17.82338 -17.28031 -16.77985 -16.27269 -16.03439 -15.81332 -15.26145 -14.98429 -14.96440 -14.58387 -14.47684 -14.08204 -13.90192 -13.61451 -13.35980 -13.34096 -13.21158 -13.15395 -13.12930 -13.04175 -12.92884 -12.80417 -12.48684 -12.47655 -12.37983 -12.14041 -11.98227 -11.75550 -11.74222 -10.79448 -10.57395 -10.43780 -9.81589 -9.15285 -8.20403 -6.30845 -0.51331 -0.36766 0.00905 1.16602 1.39372 1.42153 1.42656 1.52145 2.05439 2.27200 2.40752 2.56803 2.81994 3.11376 3.22613 3.38946 3.43099 3.59363 3.77508 3.86538 3.99839 4.13087 4.28709 4.39909 4.52238 4.64395 4.69675 4.75745 4.85749 4.87842 4.89899 4.99739 5.11594 5.20998 5.21565 5.24683 5.44631 5.45898 5.67985 5.73964 5.78144 5.96370 6.12144 6.77071 7.33687 7.37966 8.86872 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.003352 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.858069 B = 8350.036036 C = 9661.737546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.088 4.088 3 C -0.057 4.057 4 C -0.097 4.097 5 C 0.184 3.816 6 N -0.336 5.336 7 N -0.267 5.267 8 C 0.124 3.876 9 C 0.214 3.786 10 N -1.120 6.120 11 S 2.802 3.198 12 O -1.006 7.006 13 O -1.004 7.004 14 N -0.998 5.998 15 C 0.082 3.918 16 C 0.272 3.728 17 C -0.552 4.552 18 H 0.050 0.950 19 C 0.016 3.984 20 N -0.921 5.921 21 Si 0.951 3.049 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.277 1.277 25 N -0.378 5.378 26 C 0.034 3.966 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.191 0.809 31 H 0.179 0.821 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.418 0.582 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 18.920 11.817 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.081 4.081 4 C -0.118 4.118 5 C -0.065 4.065 6 N -0.183 5.183 7 N -0.108 5.108 8 C -0.141 4.141 9 C 0.086 3.914 10 N -0.882 5.882 11 S 2.810 3.190 12 O -0.990 6.990 13 O -0.987 6.987 14 N -0.841 5.841 15 C -0.063 4.063 16 C 0.148 3.852 17 C -0.591 4.591 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.561 5.561 21 Si 0.776 3.224 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.203 1.203 25 N -0.057 5.057 26 C -0.088 4.088 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.208 0.792 31 H 0.196 0.804 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.112 18.349 11.444 21.626 hybrid contribution -1.370 -0.744 -0.926 1.813 sum -1.482 17.606 10.517 20.562 Atomic orbital electron populations 1.20864 0.86139 1.05284 1.04203 1.20136 0.99198 0.90972 0.98893 1.21703 0.92530 0.99891 0.94018 1.20688 0.94739 0.93760 1.02639 1.22968 0.89348 0.89575 1.04577 1.74878 1.13873 1.05014 1.24537 1.74139 1.20910 1.01280 1.14434 1.24620 0.84150 0.93524 1.11784 1.19636 1.05177 0.83479 0.83074 1.55994 1.91614 1.26586 1.13984 1.01160 0.72920 0.72829 0.72117 1.93590 1.86999 1.85690 1.32673 1.93520 1.50909 1.79315 1.74925 1.57461 1.28908 1.73653 1.24029 1.21701 1.03333 1.01109 0.80166 1.18655 0.81389 0.95385 0.89723 1.21864 1.05505 1.01146 1.30582 0.93166 1.25650 0.95258 1.00926 0.96552 1.69973 1.09915 1.36417 1.39746 0.85664 0.78040 0.80319 0.78358 1.18994 1.20473 1.20255 1.43703 1.08064 1.07788 1.46130 1.22140 0.79066 1.03082 1.04503 0.89607 0.90217 0.88184 0.79157 0.80368 0.86628 0.86518 0.74759 0.90042 0.90798 0.90695 0.94412 0.96398 0.92380 0.79587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.00 71.24 0.71 0.18 16 2 C -0.09 -0.92 5.85 -20.06 -0.12 -1.03 16 3 C -0.06 -0.48 9.73 22.32 0.22 -0.27 16 4 C -0.10 -1.41 10.11 22.39 0.23 -1.18 16 5 C 0.18 4.50 7.92 134.07 1.06 5.56 16 6 N -0.34 -10.70 12.31 -55.40 -0.68 -11.38 16 7 N -0.27 -8.86 12.19 -49.69 -0.61 -9.46 16 8 C 0.12 3.35 7.53 137.71 1.04 4.38 16 9 C 0.21 5.14 6.77 85.63 0.58 5.72 16 10 N -1.12 -32.73 6.05 -190.79 -1.15 -33.88 16 11 S 2.80 107.53 6.10 -56.49 -0.34 107.19 16 12 O -1.01 -48.43 17.11 -128.00 -2.19 -50.62 16 13 O -1.00 -40.59 16.21 -128.00 -2.07 -42.67 16 14 N -1.00 -37.90 3.23 -543.23 -1.75 -39.65 16 15 C 0.08 2.41 10.68 127.77 1.36 3.77 16 16 C 0.27 12.85 5.08 85.63 0.43 13.29 16 17 C -0.55 -30.21 9.38 25.60 0.24 -29.97 16 18 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 19 C 0.02 0.88 5.46 84.65 0.46 1.34 16 20 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 21 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 N -0.38 -8.60 2.95 -342.89 -1.01 -9.61 16 26 C 0.03 0.53 10.52 83.23 0.88 1.41 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.08 0.39 8.07 -2.39 -0.02 0.37 16 29 H 0.10 0.08 8.09 -2.39 -0.02 0.07 16 30 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 31 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.12 2.77 7.75 -2.38 -0.02 2.75 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.42 11.81 8.64 -96.74 -0.84 10.97 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 37 H 0.07 2.11 7.02 -2.39 -0.02 2.10 16 38 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 39 H 0.02 0.92 7.61 -2.39 -0.02 0.90 16 40 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -81.98 367.39 -0.18 -82.16 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.23 Total: 10.57 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 7.09 Total: 3.20 kcal Atomic # 7 Polarization: -150.59 SS G_CDS: -4.92 Total: -155.51 kcal Atomic # 8 Polarization: -89.02 SS G_CDS: -4.26 Total: -93.29 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 107.53 SS G_CDS: -0.34 Total: 107.19 kcal Total: -81.98 -0.18 -82.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413378971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.351 kcal (2) G-P(sol) polarization free energy of solvation -81.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds