Wall clock time and date at job start Tue Mar 31 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99663 * 2 1 4 4 H 1.48497 * 109.47293 * 274.92394 * 3 2 1 5 5 H 1.48492 * 109.47286 * 34.93147 * 3 2 1 6 6 H 1.48507 * 109.46767 * 154.92816 * 3 2 1 7 7 C 1.37878 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99623 * 4.97656 * 7 2 1 9 9 C 1.50699 * 119.99861 * 184.98293 * 7 2 1 10 10 H 1.08993 * 109.47063 * 325.01624 * 9 7 2 11 11 N 1.46497 * 109.47149 * 85.01907 * 9 7 2 12 12 C 1.34784 * 119.99941 * 204.99857 * 11 9 7 13 13 O 1.21588 * 119.99388 * 5.18551 * 12 11 9 14 14 N 1.34774 * 119.99643 * 185.18607 * 12 11 9 15 15 C 1.47150 * 120.98725 * 355.01576 * 14 12 11 16 16 C 1.53290 * 108.38340 * 129.47567 * 15 14 12 17 17 O 1.42966 * 109.22590 * 52.30357 * 16 15 14 18 18 C 1.42959 * 114.16381 * 297.42008 * 17 16 15 19 19 H 1.09004 * 109.51282 * 302.60101 * 18 17 16 20 20 C 1.52999 * 109.50965 * 182.50123 * 18 17 16 21 21 C 1.50705 * 109.47334 * 65.10313 * 20 18 17 22 22 N 1.34771 * 120.00131 * 179.97438 * 21 20 18 23 23 O 1.21282 * 119.99683 * 359.97438 * 21 20 18 24 24 C 1.47174 * 120.93817 * 174.99178 * 14 12 11 25 25 C 1.52999 * 109.46924 * 205.01529 * 9 7 2 26 26 F 1.39900 * 109.47155 * 304.88821 * 25 9 7 27 27 F 1.39908 * 109.47130 * 64.88031 * 25 9 7 28 28 F 1.39900 * 109.47385 * 184.88062 * 25 9 7 29 29 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99952 * 25.00051 * 11 9 7 31 31 H 1.09001 * 109.67927 * 9.75332 * 15 14 12 32 32 H 1.09000 * 109.67991 * 249.19858 * 15 14 12 33 33 H 1.09004 * 109.51721 * 292.37568 * 16 15 14 34 34 H 1.09007 * 109.55450 * 172.25176 * 16 15 14 35 35 H 1.08998 * 109.47384 * 305.09622 * 20 18 17 36 36 H 1.09004 * 109.46820 * 185.09880 * 20 18 17 37 37 H 0.97003 * 120.00297 * 359.97438 * 22 21 20 38 38 H 0.96998 * 120.00178 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.64108 * 110.77858 * 24 14 12 40 40 H 1.09002 * 109.72480 * 350.21942 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3925 2.1066 -1.3949 5 1 1.5025 2.6203 0.8016 6 1 3.5949 1.4124 0.5933 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0821 9 6 3.5073 -1.1965 0.1128 10 1 3.9125 -0.3301 -0.4098 11 7 3.8905 -1.1378 1.5256 12 6 5.0903 -0.6348 1.8780 13 8 5.8151 -0.1436 1.0344 14 7 5.4864 -0.6763 3.1656 15 6 4.5845 -1.1657 4.2203 16 6 5.3328 -2.2178 5.0466 17 8 6.5817 -1.6742 5.4810 18 6 7.4724 -1.3309 4.4168 19 1 7.6617 -2.2111 3.8022 20 6 8.7920 -0.8210 4.9994 21 6 9.4770 -1.9375 5.7445 22 7 10.6638 -1.7186 6.3446 23 8 8.9603 -3.0332 5.8041 24 6 6.8343 -0.2338 3.5572 25 6 4.0639 -2.4765 -0.5138 26 9 3.4597 -3.5885 0.0824 27 9 3.7939 -2.4792 -1.8866 28 9 5.4469 -2.5321 -0.3105 29 1 -0.4850 0.8400 0.0004 30 1 3.2809 -1.4610 2.2073 31 1 3.7003 -1.6149 3.7679 32 1 4.2877 -0.3369 4.8632 33 1 5.5136 -3.1010 4.4338 34 1 4.7340 -2.4935 5.9148 35 1 8.5926 0.0037 5.6836 36 1 9.4362 -0.4748 4.1911 37 1 11.0772 -0.8424 6.2966 38 1 11.1045 -2.4371 6.8245 39 1 6.7641 0.6892 4.1327 40 1 7.4399 -0.0665 2.6665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413645160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:44 Heat of formation + Delta-G solvation = -259.525139 kcal Electronic energy + Delta-G solvation = -31475.457035 eV Core-core repulsion = 26489.603560 eV Total energy + Delta-G solvation = -4985.853475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.06555 -46.58090 -46.55576 -40.40346 -39.49770 -38.13861 -34.95865 -34.44947 -33.91764 -33.08516 -32.42144 -29.26426 -29.01370 -26.45361 -24.97881 -23.62859 -22.22075 -21.10268 -20.54834 -19.49318 -18.60616 -17.65681 -17.53839 -17.46542 -17.02486 -16.79320 -16.63097 -16.47729 -15.76358 -15.16258 -15.03476 -14.84106 -14.75629 -14.39954 -14.00002 -13.62002 -13.47113 -13.40504 -13.21197 -13.04329 -12.98100 -12.76120 -12.73421 -12.65740 -12.42214 -12.21265 -11.81275 -11.67915 -11.34533 -11.15560 -10.72327 -10.68810 -10.15245 -10.11020 -10.05406 -9.91899 -9.83007 -9.59881 -8.99304 -8.56489 -8.16292 -6.54389 -4.69666 2.47101 2.81791 3.12674 3.21648 3.28072 3.35608 3.57725 3.62119 3.95325 4.11804 4.22057 4.52702 4.61746 4.87235 4.90909 4.94722 5.01042 5.16351 5.17120 5.20116 5.21848 5.33901 5.40128 5.42757 5.63028 5.76072 5.78052 5.96544 6.29447 6.51052 6.59237 6.88699 7.03303 7.13071 7.17464 7.32848 7.88589 8.05811 8.51528 8.53356 9.01574 9.10561 10.53399 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.003652 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.272774 B = 7665.257104 C = 8248.689035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.100 3.900 3 Si 0.865 3.135 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.219 3.781 10 H 0.091 0.909 11 N -0.728 5.728 12 C 0.701 3.299 13 O -0.589 6.589 14 N -0.638 5.638 15 C 0.075 3.925 16 C 0.053 3.947 17 O -0.368 6.368 18 C 0.092 3.908 19 H 0.072 0.928 20 C -0.135 4.135 21 C 0.519 3.481 22 N -0.862 5.862 23 O -0.528 6.528 24 C 0.104 3.896 25 C 0.439 3.561 26 F -0.190 7.190 27 F -0.185 7.185 28 F -0.196 7.196 29 H 0.275 0.725 30 H 0.395 0.605 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.400 0.600 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.435 0.669 12.326 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.110 4.110 3 Si 0.690 3.310 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.116 3.884 10 H 0.109 0.891 11 N -0.385 5.385 12 C 0.403 3.597 13 O -0.468 6.468 14 N -0.378 5.378 15 C -0.049 4.049 16 C -0.024 4.024 17 O -0.286 6.286 18 C 0.032 3.968 19 H 0.090 0.910 20 C -0.175 4.175 21 C 0.304 3.696 22 N -0.426 5.426 23 O -0.403 6.403 24 C -0.020 4.020 25 C 0.383 3.617 26 F -0.172 7.172 27 F -0.166 7.166 28 F -0.178 7.178 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.228 0.772 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.315 0.473 11.761 19.315 hybrid contribution 0.403 0.631 0.223 0.781 sum 15.717 1.104 11.985 19.796 Atomic orbital electron populations 1.69872 1.06472 1.28364 1.44457 1.24975 0.94764 0.99373 0.91873 0.86943 0.81763 0.82729 0.79601 1.19415 1.20685 1.16770 1.20801 0.86430 0.96456 1.53821 0.88760 1.19967 0.97716 0.90236 0.80525 0.89141 1.47016 1.16061 1.65610 1.09830 1.16283 0.82826 0.79040 0.81564 1.90850 1.55526 1.51339 1.49050 1.47335 1.14795 1.69823 1.05849 1.22340 0.93687 0.98282 0.90547 1.22920 0.85090 0.95045 0.99366 1.87927 1.26559 1.82935 1.31227 1.22162 0.88355 0.97369 0.88867 0.91022 1.21669 0.95965 0.98199 1.01706 1.20516 0.80698 0.89734 0.78701 1.43896 1.23374 1.17070 1.58288 1.90784 1.64206 1.25553 1.59752 1.22039 0.83828 0.96261 0.99898 1.21651 0.74801 0.88440 0.76774 1.93076 1.83429 1.56941 1.83731 1.93100 1.93685 1.96904 1.32959 1.93129 1.32853 1.97000 1.94788 0.91497 0.76729 0.88912 0.90702 0.92420 0.87741 0.87625 0.87024 0.77198 0.76988 0.91330 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.44 13.96 55.43 0.77 -22.67 16 2 C 0.10 2.61 5.47 -17.82 -0.10 2.51 16 3 Si 0.87 20.07 27.19 -169.99 -4.62 15.45 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.82 6.24 56.52 0.35 -5.47 16 7 C -0.54 -13.69 8.69 -34.44 -0.30 -13.99 16 8 H 0.09 2.60 7.66 -52.49 -0.40 2.20 16 9 C 0.22 5.10 1.40 -69.08 -0.10 5.00 16 10 H 0.09 2.24 5.09 -51.93 -0.26 1.98 16 11 N -0.73 -15.05 4.79 -59.82 -0.29 -15.34 16 12 C 0.70 14.25 7.38 -86.91 -0.64 13.61 16 13 O -0.59 -13.76 14.70 5.29 0.08 -13.68 16 14 N -0.64 -10.30 3.02 -177.99 -0.54 -10.84 16 15 C 0.08 0.98 6.63 -3.54 -0.02 0.96 16 16 C 0.05 0.65 6.98 37.31 0.26 0.91 16 17 O -0.37 -4.91 9.63 -49.51 -0.48 -5.39 16 18 C 0.09 1.12 2.32 -26.58 -0.06 1.06 16 19 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 20 C -0.13 -1.12 5.41 -27.88 -0.15 -1.27 16 21 C 0.52 5.26 7.98 -10.99 -0.09 5.17 16 22 N -0.86 -4.95 8.87 31.22 0.28 -4.67 16 23 O -0.53 -8.02 16.26 -8.73 -0.14 -8.16 16 24 C 0.10 1.38 5.91 -3.52 -0.02 1.36 16 25 C 0.44 9.91 2.83 37.16 0.11 10.01 16 26 F -0.19 -4.18 16.62 2.25 0.04 -4.14 16 27 F -0.18 -4.20 17.14 2.25 0.04 -4.16 16 28 F -0.20 -4.39 15.76 2.25 0.04 -4.36 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 7.39 6.11 -40.82 -0.25 7.14 16 31 H 0.09 1.18 5.66 -51.93 -0.29 0.89 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 0.96 8.83 -40.82 -0.36 0.60 16 38 H 0.40 2.06 8.93 -40.82 -0.36 1.70 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.44 7.12 -51.93 -0.37 1.07 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -34.48 343.91 -5.19 -39.67 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.44 Total: 7.78 kcal Atomic # 6 Polarization: 26.44 SS G_CDS: -1.11 Total: 25.33 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.23 Total: -53.52 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.54 Total: -27.24 kcal Atomic # 9 Polarization: -12.77 SS G_CDS: 0.11 Total: -12.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.62 Total: 15.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.48 -5.19 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.855 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds